All modules for which code is available
- _thread
- logging
- tvb.adapters.analyzers.bct_adapters
- tvb.adapters.analyzers.bct_centrality_adapters
- tvb.adapters.analyzers.bct_clustering_adapters
- tvb.adapters.analyzers.bct_degree_adapters
- tvb.adapters.analyzers.cross_correlation_adapter
- tvb.adapters.analyzers.fcd_adapter
- tvb.adapters.analyzers.fmri_balloon_adapter
- tvb.adapters.analyzers.fourier_adapter
- tvb.adapters.analyzers.ica_adapter
- tvb.adapters.analyzers.metrics_group_timeseries
- tvb.adapters.analyzers.node_coherence_adapter
- tvb.adapters.analyzers.node_complex_coherence_adapter
- tvb.adapters.analyzers.node_covariance_adapter
- tvb.adapters.analyzers.pca_adapter
- tvb.adapters.analyzers.wavelet_adapter
- tvb.adapters.creators.allen_creator
- tvb.adapters.creators.connectivity_creator
- tvb.adapters.creators.local_connectivity_creator
- tvb.adapters.creators.siibra_base
- tvb.adapters.creators.siibra_creator
- tvb.adapters.creators.stimulus_creator
- tvb.adapters.datatypes.db.annotation
- tvb.adapters.datatypes.db.connectivity
- tvb.adapters.datatypes.db.fcd
- tvb.adapters.datatypes.db.graph
- tvb.adapters.datatypes.db.local_connectivity
- tvb.adapters.datatypes.db.mapped_value
- tvb.adapters.datatypes.db.mode_decompositions
- tvb.adapters.datatypes.db.patterns
- tvb.adapters.datatypes.db.projections
- tvb.adapters.datatypes.db.region_mapping
- tvb.adapters.datatypes.db.sensors
- tvb.adapters.datatypes.db.simulation_history
- tvb.adapters.datatypes.db.spectral
- tvb.adapters.datatypes.db.structural
- tvb.adapters.datatypes.db.surface
- tvb.adapters.datatypes.db.temporal_correlations
- tvb.adapters.datatypes.db.time_series
- tvb.adapters.datatypes.db.tracts
- tvb.adapters.datatypes.db.volume
- tvb.adapters.datatypes.h5.annotation_h5
- tvb.adapters.datatypes.h5.connectivity_h5
- tvb.adapters.datatypes.h5.fcd_h5
- tvb.adapters.datatypes.h5.graph_h5
- tvb.adapters.datatypes.h5.local_connectivity_h5
- tvb.adapters.datatypes.h5.mapped_value_h5
- tvb.adapters.datatypes.h5.mode_decompositions_h5
- tvb.adapters.datatypes.h5.patterns_h5
- tvb.adapters.datatypes.h5.projections_h5
- tvb.adapters.datatypes.h5.region_mapping_h5
- tvb.adapters.datatypes.h5.sensors_h5
- tvb.adapters.datatypes.h5.spectral_h5
- tvb.adapters.datatypes.h5.structural_h5
- tvb.adapters.datatypes.h5.surface_h5
- tvb.adapters.datatypes.h5.temporal_correlations_h5
- tvb.adapters.datatypes.h5.time_series_h5
- tvb.adapters.datatypes.h5.tracts_h5
- tvb.adapters.datatypes.h5.volumes_h5
- tvb.adapters.exporters.abcexporter
- tvb.adapters.exporters.exceptions
- tvb.adapters.exporters.export_manager
- tvb.adapters.exporters.tvb_export
- tvb.adapters.exporters.tvb_linked_export
- tvb.adapters.forms.coupling_forms
- tvb.adapters.forms.equation_forms
- tvb.adapters.forms.equation_plot_forms
- tvb.adapters.forms.form_with_ranges
- tvb.adapters.forms.integrator_forms
- tvb.adapters.forms.model_forms
- tvb.adapters.forms.monitor_forms
- tvb.adapters.forms.noise_forms
- tvb.adapters.forms.simulator_fragments
- tvb.adapters.forms.surface_model_parameters_form
- tvb.adapters.forms.transfer_vector_form
- tvb.adapters.simulator.hpc_simulator_adapter
- tvb.adapters.simulator.range_parameters
- tvb.adapters.simulator.simulator_adapter
- tvb.adapters.uploaders.bids_importer
- tvb.adapters.uploaders.brco.parser
- tvb.adapters.uploaders.brco_importer
- tvb.adapters.uploaders.connectivity_measure_importer
- tvb.adapters.uploaders.csv_connectivity_importer
- tvb.adapters.uploaders.gifti.parser
- tvb.adapters.uploaders.gifti_surface_importer
- tvb.adapters.uploaders.gifti_timeseries_importer
- tvb.adapters.uploaders.mat.parser
- tvb.adapters.uploaders.mat_timeseries_eeg_importer
- tvb.adapters.uploaders.mat_timeseries_importer
- tvb.adapters.uploaders.networkx_connectivity.parser
- tvb.adapters.uploaders.networkx_importer
- tvb.adapters.uploaders.nifti.parser
- tvb.adapters.uploaders.nifti_importer
- tvb.adapters.uploaders.obj.parser
- tvb.adapters.uploaders.obj.surface
- tvb.adapters.uploaders.obj_importer
- tvb.adapters.uploaders.projection_matrix_importer
- tvb.adapters.uploaders.region_mapping_importer
- tvb.adapters.uploaders.sensors_importer
- tvb.adapters.uploaders.tract_importer
- tvb.adapters.uploaders.tumor_dataset_importer
- tvb.adapters.uploaders.tvb_importer
- tvb.adapters.uploaders.zip_connectivity_importer
- tvb.adapters.uploaders.zip_surface.parser
- tvb.adapters.uploaders.zip_surface_importer
- tvb.adapters.visualizers.annotations_viewer
- tvb.adapters.visualizers.brain
- tvb.adapters.visualizers.complex_imaginary_coherence
- tvb.adapters.visualizers.connectivity
- tvb.adapters.visualizers.connectivity_edge_bundle
- tvb.adapters.visualizers.cross_coherence
- tvb.adapters.visualizers.cross_correlation
- tvb.adapters.visualizers.eeg_monitor
- tvb.adapters.visualizers.fourier_spectrum
- tvb.adapters.visualizers.histogram
- tvb.adapters.visualizers.ica
- tvb.adapters.visualizers.local_connectivity_view
- tvb.adapters.visualizers.matrix_viewer
- tvb.adapters.visualizers.pca
- tvb.adapters.visualizers.pearson_cross_correlation
- tvb.adapters.visualizers.pearson_edge_bundle
- tvb.adapters.visualizers.phase_plane_interactive
- tvb.adapters.visualizers.pse
- tvb.adapters.visualizers.pse_discrete
- tvb.adapters.visualizers.pse_isocline
- tvb.adapters.visualizers.region_volume_mapping
- tvb.adapters.visualizers.sensors
- tvb.adapters.visualizers.surface_view
- tvb.adapters.visualizers.time_series
- tvb.adapters.visualizers.time_series_volume
- tvb.adapters.visualizers.topographic
- tvb.adapters.visualizers.tract
- tvb.adapters.visualizers.wavelet_spectrogram
- tvb.analyzers.fft
- tvb.analyzers.fmri_balloon
- tvb.analyzers.graph
- tvb.analyzers.ica
- tvb.analyzers.ica_algorithm
- tvb.analyzers.info
- tvb.analyzers.metric_kuramoto_index
- tvb.analyzers.metric_proxy_metastability
- tvb.analyzers.metric_variance_global
- tvb.analyzers.metric_variance_of_node_variance
- tvb.analyzers.node_coherence
- tvb.analyzers.node_complex_coherence
- tvb.analyzers.pca
- tvb.analyzers.wavelet
- tvb.basic.config.environment
- tvb.basic.config.profile_settings
- tvb.basic.config.settings
- tvb.basic.config.stored
- tvb.basic.config.utils
- tvb.basic.exceptions
- tvb.basic.logger.builder
- tvb.basic.logger.simple_handler
- tvb.basic.neotraits._attr
- tvb.basic.neotraits._core
- tvb.basic.neotraits._declarative_base
- tvb.basic.neotraits.ex
- tvb.basic.neotraits.info
- tvb.basic.profile
- tvb.basic.readers
- tvb.config.algorithm_categories
- tvb.config.init.alembic.versions.32d4bf9f8ghj_update_db_004
- tvb.config.init.datatypes_registry
- tvb.config.init.initializer
- tvb.config.init.introspector_registry
- tvb.config.init.model_manager
- tvb.config.logger.cluster_handler
- tvb.config.logger.elasticsearch_handler
- tvb.config.profile_settings
- tvb.core.adapters.abcadapter
- tvb.core.adapters.abcdisplayer
- tvb.core.adapters.abcremover
- tvb.core.adapters.abcuploader
- tvb.core.adapters.arguments_serialisation
- tvb.core.adapters.exceptions
- tvb.core.adapters.inputs_processor
- tvb.core.code_versions.base_classes
- tvb.core.code_versions.code_update_manager
- tvb.core.code_versions.code_update_scripts.4455_update_code
- tvb.core.code_versions.code_update_scripts.4750_update_code
- tvb.core.code_versions.code_update_scripts.5454_update_code
- tvb.core.code_versions.code_update_scripts.6093_update_code
- tvb.core.code_versions.code_update_scripts.6600_update_code
- tvb.core.code_versions.code_update_scripts.6728_update_code
- tvb.core.code_versions.code_update_scripts.7350_update_code
- tvb.core.code_versions.code_update_scripts.7450_update_code
- tvb.core.code_versions.code_update_scripts.9444_update_code
- tvb.core.decorators
- tvb.core.entities.exportable
- tvb.core.entities.file.file_update_scripts.002_update_files
- tvb.core.entities.file.file_update_scripts.003_update_files
- tvb.core.entities.file.file_update_scripts.004_update_files
- tvb.core.entities.file.file_update_scripts.005_update_files
- tvb.core.entities.file.files_update_manager
- tvb.core.entities.file.simulator.burst_configuration_h5
- tvb.core.entities.file.simulator.datatype_measure_h5
- tvb.core.entities.file.simulator.simulation_history_h5
- tvb.core.entities.file.simulator.view_model
- tvb.core.entities.filters.chain
- tvb.core.entities.filters.exceptions
- tvb.core.entities.filters.factory
- tvb.core.entities.generic_attributes
- tvb.core.entities.load
- tvb.core.entities.model.model_burst
- tvb.core.entities.model.model_datatype
- tvb.core.entities.model.model_operation
- tvb.core.entities.model.model_project
- tvb.core.entities.storage
- tvb.core.entities.storage.burst_dao
- tvb.core.entities.storage.datatype_dao
- tvb.core.entities.storage.exceptions
- tvb.core.entities.storage.operation_dao
- tvb.core.entities.storage.project_dao
- tvb.core.entities.storage.root_dao
- tvb.core.entities.storage.session_maker
- tvb.core.entities.storage.workflow_dao
- tvb.core.entities.transient.context_overlay
- tvb.core.entities.transient.range_parameter
- tvb.core.entities.transient.structure_entities
- tvb.core.neocom._h5loader
- tvb.core.neocom._registry
- tvb.core.neocom.h5
- tvb.core.neotraits._h5accessors
- tvb.core.neotraits._h5core
- tvb.core.neotraits.db
- tvb.core.neotraits.forms
- tvb.core.neotraits.spatial_model
- tvb.core.neotraits.uploader_view_model
- tvb.core.neotraits.view_model
- tvb.core.operation_async_launcher
- tvb.core.operation_hpc_launcher
- tvb.core.project_versions.project_update_manager
- tvb.core.project_versions.project_update_scripts.1_update_project
- tvb.core.project_versions.project_update_scripts.2_update_project
- tvb.core.project_versions.project_update_scripts.3_update_project
- tvb.core.removers_factory
- tvb.core.services.algorithm_service
- tvb.core.services.authorization
- tvb.core.services.backend_client_factory
- tvb.core.services.backend_clients.backend_client
- tvb.core.services.backend_clients.cluster_scheduler_client
- tvb.core.services.backend_clients.hpc_scheduler_client
- tvb.core.services.backend_clients.standalone_client
- tvb.core.services.burst_config_serialization
- tvb.core.services.burst_service
- tvb.core.services.email_sender
- tvb.core.services.exceptions
- tvb.core.services.figure_service
- tvb.core.services.hpc_operation_service
- tvb.core.services.import_service
- tvb.core.services.operation_service
- tvb.core.services.project_service
- tvb.core.services.settings_service
- tvb.core.services.simulator_service
- tvb.core.services.texture_to_json
- tvb.core.services.user_service
- tvb.core.utils
- tvb.datatypes.connectivity
- tvb.datatypes.cortex
- tvb.datatypes.equations
- tvb.datatypes.fcd
- tvb.datatypes.graph
- tvb.datatypes.local_connectivity
- tvb.datatypes.mode_decompositions
- tvb.datatypes.patterns
- tvb.datatypes.projections
- tvb.datatypes.region_mapping
- tvb.datatypes.sensors
- tvb.datatypes.spectral
- tvb.datatypes.structural
- tvb.datatypes.surfaces
- tvb.datatypes.temporal_correlations
- tvb.datatypes.time_series
- tvb.datatypes.tracts
- tvb.datatypes.volumes
- tvb.interfaces.command.demos.datatypes.modify_h5_metadata
- tvb.interfaces.command.demos.datatypes.read_from_h5
- tvb.interfaces.command.demos.datatypes.search_and_export
- tvb.interfaces.command.demos.importers.brain_tumor_connectivity_importer
- tvb.interfaces.command.demos.importers.h5_import
- tvb.interfaces.command.demos.importers.new_importer
- tvb.interfaces.command.demos.operations.run_analyzer
- tvb.interfaces.command.demos.operations.run_simulation
- tvb.interfaces.command.demos.project.project_export
- tvb.interfaces.command.demos.project.project_import
- tvb.interfaces.command.lab
- tvb.interfaces.rest.bids_monitor.bids_data_builder
- tvb.interfaces.rest.bids_monitor.bids_dir_monitor
- tvb.interfaces.rest.bids_monitor.launch_bids_monitor
- tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test
- tvb.interfaces.rest.client.client_decorators
- tvb.interfaces.rest.client.main_api
- tvb.interfaces.rest.client.tests.rest_test
- tvb.interfaces.rest.client.tvb_client
- tvb.interfaces.rest.commons.decoders
- tvb.interfaces.rest.commons.dtos
- tvb.interfaces.rest.commons.exceptions
- tvb.interfaces.rest.commons.files_helper
- tvb.interfaces.rest.commons.strings
- tvb.interfaces.rest.server.access_permissions.permissions
- tvb.interfaces.rest.server.facades.datatype_facade
- tvb.interfaces.rest.server.facades.operation_facade
- tvb.interfaces.rest.server.facades.project_facade
- tvb.interfaces.rest.server.facades.simulation_facade
- tvb.interfaces.rest.server.facades.user_facade
- tvb.interfaces.rest.server.request_helper
- tvb.interfaces.rest.server.resources.rest_resource
- tvb.interfaces.rest.server.rest_api
- tvb.interfaces.rest.server.run
- tvb.interfaces.web.controllers.autologging
- tvb.interfaces.web.controllers.base_controller
- tvb.interfaces.web.controllers.burst.base_controller
- tvb.interfaces.web.controllers.burst.dynamic_model_controller
- tvb.interfaces.web.controllers.burst.exploration_controller
- tvb.interfaces.web.controllers.burst.matjax
- tvb.interfaces.web.controllers.burst.noise_configuration_controller
- tvb.interfaces.web.controllers.burst.region_model_parameters_controller
- tvb.interfaces.web.controllers.burst.transfer_vector_controller
- tvb.interfaces.web.controllers.common
- tvb.interfaces.web.controllers.decorators
- tvb.interfaces.web.controllers.flow_controller
- tvb.interfaces.web.controllers.help.help_config
- tvb.interfaces.web.controllers.help.help_controller
- tvb.interfaces.web.controllers.hpc_controller
- tvb.interfaces.web.controllers.kube_controller
- tvb.interfaces.web.controllers.project.figure_controller
- tvb.interfaces.web.controllers.project.project_controller
- tvb.interfaces.web.controllers.settings_controller
- tvb.interfaces.web.controllers.simulator.monitors_wizard_handler
- tvb.interfaces.web.controllers.simulator.simulator_controller
- tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules
- tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls
- tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller
- tvb.interfaces.web.controllers.spatial.local_connectivity_controller
- tvb.interfaces.web.controllers.spatial.region_stimulus_controller
- tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller
- tvb.interfaces.web.controllers.spatial.surface_stimulus_controller
- tvb.interfaces.web.controllers.users_controller
- tvb.interfaces.web.entities.context_model_parameters
- tvb.interfaces.web.entities.context_overlay
- tvb.interfaces.web.entities.context_selected_adapter
- tvb.interfaces.web.entities.context_simulator
- tvb.interfaces.web.entities.context_transfer_vector
- tvb.interfaces.web.request_handler
- tvb.interfaces.web.run
- tvb.interfaces.web.run_landing_page
- tvb.interfaces.web.structure
- tvb.rateML.XML2model
- tvb.rateML.generatedModels.epileptor
- tvb.rateML.generatedModels.kuramoto
- tvb.rateML.generatedModels.montbrio
- tvb.rateML.generatedModels.oscillator
- tvb.rateML.generatedModels.rwongwang
- tvb.rateML.run.model_driver
- tvb.rateML.run.model_driver_bold
- tvb.rateML.run.model_driver_zerlaut
- tvb.rateML.run.regular_run
- tvb.simulator.backend.base
- tvb.simulator.backend.cu
- tvb.simulator.backend.nb
- tvb.simulator.backend.nb_mpr
- tvb.simulator.backend.np
- tvb.simulator.backend.ref
- tvb.simulator.backend.templates
- tvb.simulator.common
- tvb.simulator.coupling
- tvb.simulator.descriptors
- tvb.simulator.history
- tvb.simulator.integrators
- tvb.simulator.models
- tvb.simulator.models.base
- tvb.simulator.models.epileptor
- tvb.simulator.models.hopfield
- tvb.simulator.models.jansen_rit
- tvb.simulator.models.larter_breakspear
- tvb.simulator.models.linear
- tvb.simulator.models.oscillator
- tvb.simulator.models.stefanescu_jirsa
- tvb.simulator.models.wilson_cowan
- tvb.simulator.models.wong_wang
- tvb.simulator.monitors
- tvb.simulator.noise
- tvb.simulator.simulator
- tvb.storage.h5.decorators
- tvb.storage.h5.encryption.data_encryption_handler
- tvb.storage.h5.encryption.encryption_handler
- tvb.storage.h5.encryption.import_export_encryption_handler
- tvb.storage.h5.file.exceptions
- tvb.storage.h5.file.files_helper
- tvb.storage.h5.file.hdf5_storage_manager
- tvb.storage.h5.file.xml_metadata_handlers
- tvb.storage.h5.utils
- tvb.storage.kube.kube_notifier
- tvb.storage.storage_interface