TheVirtualBrain:

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Source code for tvb.basic.config.environment

# -*- coding: utf-8 -*-
#
#
# TheVirtualBrain-Scientific Package. This package holds all simulators, and
# analysers necessary to run brain-simulations. You can use it stand alone or
# in conjunction with TheVirtualBrain-Framework Package. See content of the
# documentation-folder for more details. See also http://www.thevirtualbrain.org
#
# (c) 2012-2022, Baycrest Centre for Geriatric Care ("Baycrest") and others
#
# This program is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software Foundation,
# either version 3 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.  See the GNU General Public License for more details.
# You should have received a copy of the GNU General Public License along with this
# program.  If not, see <http://www.gnu.org/licenses/>.
#
#
#   CITATION:
# When using The Virtual Brain for scientific publications, please cite it as follows:
#
#   Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide,
#   Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013)
#       The Virtual Brain: a simulator of primate brain network dynamics.
#   Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010)
#
#

"""
Environment related checks or operations are to be defined here.

.. moduleauthor:: Lia Domide <lia.domide@codemart.ro>
.. moduleauthor:: Mihai Andrei <mihai.andrei@codemart.ro>
"""

import os
import sys
from subprocess import Popen, PIPE
from tvb.basic.config.settings import VersionSettings


[docs]class Environment(object): PYTHON_FOLDER = "python%s.%s" % sys.version_info[:2]
[docs] def is_framework_present(self): """ :return: True when framework classes are present and can be imported. """ framework_present = True try: from tvb.config.profile_settings import WebSettingsProfile except ImportError: framework_present = False return framework_present
@staticmethod
[docs] def is_distribution(): """ Return True when TVB_Distribution package, False when used from a GitHub clone, Pypi, Conda or Docker """ try: import tvb_bin except ImportError: # No tvb_bin, it means usage from Pypi or Conda Forge return False try: _proc = Popen(["git", "status"], stdout=PIPE, stderr=PIPE) if "On branch " in str(_proc.communicate()): # usage from GitHub clone directly return False except Exception: pass externals_path = os.path.join( os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(tvb_bin.__file__)))), "externals") if os.path.exists(externals_path): # usage from GitHub clone without got cmd or inside a Docker container (as a mounted volume) return False # We default as usage from TVB_Distribution return True
[docs] def is_linux_deployment(self): """ Return True if current run is not development and is running on Linux. """ return self.is_linux() and self.is_distribution()
[docs] def is_mac_deployment(self): """ Return True if current run is not development and is running on Mac OS X """ return self.is_mac() and self.is_distribution()
[docs] def is_windows_deployment(self): """ Return True if current run is not development and is running on Windows. """ return self.is_windows() and self.is_distribution()
[docs] def is_linux(self): return not self.is_windows() and not self.is_mac()
@staticmethod
[docs] def is_mac(): return sys.platform == 'darwin'
@staticmethod
[docs] def is_windows(): return sys.platform.startswith('win')
[docs] def get_library_folder(self, default_mac): """ Return top level library folder. Will be use for setting paths """ if self.is_windows_deployment(): return os.path.dirname(sys.executable) if self.is_mac_deployment(): return os.path.dirname(default_mac) if self.is_linux_deployment(): return os.path.dirname(sys.executable)
[docs] def setup_tk_tcl_environ(self, root_folder): """ Given a root folder to look in, find the required configuration files for TCL/TK and set the proper environmental variables so everything works fine in the distribution package. :param root_folder: the top folder from which to start looking for the required configuration files """ tk_folder = self._find_file('tk.tcl', root_folder) if tk_folder: os.environ['TK_LIBRARY'] = tk_folder tcl_folder = self._find_file('init.tcl', root_folder) if tcl_folder: os.environ['TCL_LIBRARY'] = tcl_folder
def _find_file(self, target_file, root_folder): """ Search for a file in a folder directory. Return the folder in which the file can be found. :param target_file: the name of the file that is searched :param root_folder: the top lever folder from which to start searching in all it's subdirectories :returns: the name of the folder in which the file can be found """ for root, _, files in os.walk(root_folder): for file_n in files: if file_n == target_file: return root
[docs] def setup_python_path(self, *paths): """ Set PYTHONPATH :param paths: list of absolute folder paths to join. """ os.environ['PYTHONPATH'] = os.pathsep.join(paths)
[docs] def append_to_path(self, *paths): """ Set PATH :param paths: list of absolute folder paths to join and add BEFORE the current PATH """ paths = list(paths) paths.append(os.environ.get('PATH', '')) os.environ['PATH'] = os.pathsep.join(paths)