TheVirtualBrain:

TheDocumentationwebsite.

GUI Demos¶

The links in this section showcase TVB’s web interface.

Simulation¶

../_images/simulator_phase_plane_interactive.jpg — Exploring a Model phase space.¶

../_images/simulator.jpg — Launch a simulation.¶

Data Management¶

../_images/data.jpg — View the data types in a project¶

../_images/default_operations.jpg — Operations executed in the project¶

Visualizers¶

../_images/visualizer_timeseries_svgd3.jpg — Time series view¶

../_images/visualizer_brain.jpg — 3D brain activity view¶

../_images/visualizer_dual_head_eeg.jpg — Dual Brain Activity Visualizer¶

../_images/visualizer_tsv.jpg — Volume Visualizer¶

../_images/connectivity_editor.jpg — Connectivity Matrix Editor¶

Python Demos¶

These tutorials are written as IPython Notebooks and they use the scripting interface of TVB. They can be run interactively if you have TVB’s scientific library and ipython installed.

The first set of “basic” tutorials are listed roughly in the order they should be read, and cover the basic functionality of TVB’s simulator package using very simple examples.

../_images/analyze_region_corrcoef.png — Analyze Region Corrcoef¶

../_images/compare_connectivity_normalization.png — Compare Connectivity Normalization¶

../_images/display_source_sensor_geometry.png — Display Source Sensor Geometry¶

../_images/exploring_longer_time_series.png — Exploring Longer Time Series¶

../_images/exploring_the_bold_monitor.png — Exploring The Bold Monitor¶

../_images/exploring_a_surface_mesh.png — Exploring A Surface Mesh¶

../_images/generate_surrogate_connectivity.png — Generate Surrogate Connectivity¶

../_images/integrators.png — Integrators Presentation¶

../_images/integrators.png — Integrators Comparison¶

../_images/interact_client_api_simulation.png — Generate a new model using DSL¶

../_images/simulate_bold_continuation.png — Simulate Bold Continuation¶

../_images/simulate_reduced_wong_wang.png — Simulate Reduced Wong Wang¶

../_images/simulate_region_bold_stimulus.png — Simulate Region Bold Stimulus¶

../_images/simulate_region_jansen_rit.png — Simulate Region Jansen Rit¶

../_images/simulate_region_stimulus.png — Simulate Region Stimulus¶

../_images/simulate_surface_seeg_eeg_meg.png — Simulate Surface Seeg Eeg Meg¶

../_images/using_your_own_connectivity.png — Using Your Own Connectivity¶

../_images/stimuli.png — Applying multiple Stimuli¶

../_images/epileptic_signal.png — Exploring Epileptor 2D¶

../_images/epileptic_signal.png — Exploring Resting State in Epilepsy¶

../_images/epileptic_signal.png — Exploring the Epileptor 3D¶

../_images/epileptic_signal.png — Simulate SEEG for Epileptor with Observation Noise¶

Interact with TVB Framework¶

../_images/interacting_with_the_framework.png — Interacting With The Framework¶

../_images/interacting_with_the_framework.png — Generate TimeSeries for import in Web GUI¶

../_images/interacting_with_the_framework.png — Encrypt Files before upload in TVB Web GUI¶

../_images/interacting_with_the_framework.png — Launch BIDS derivatives importer¶

../_images/interacting_with_the_framework.png — Integrating with SIIBRA¶

Interact with TVB REST Client API¶

../_images/interact_client_api_simulation.png — Interacting with TVBClient API by launching simulation and analyzer methods¶

../_images/interact_client_api_operation.png — Interacting with TVBClient API importers¶

Mouse¶

../_images/interacting_with_the_framework.png — Interacting With The Framework and Allen¶

../_images/simulate_for_mouse.png — Simulate for Mouse¶

MATLAB Demos¶

These are the first demos of the experimental use of TVB from the MATLAB environment, and they will be expanded in the future.

../_images/tvb_demo_region_rww_01.png — Reduced Wong-Wang model¶

../_images/tvb_demo_two_epi_01.png — Two Epileptor simulation¶