Source code for tvb.adapters.exporters.export_manager

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Class responsible for all TVB exports (datatype or project).

.. moduleauthor:: Calin Pavel <
import shutil
from cgi import FieldStorage
from cherrypy._cpreqbody import Part

from tvb.adapters.exporters.abcexporter import ABCExporter
from tvb.adapters.exporters.exceptions import ExportException, InvalidExportDataException
from tvb.adapters.exporters.tvb_export import TVBExporter
from tvb.adapters.exporters.tvb_linked_export import TVBLinkedExporter
from tvb.basic.logger.builder import get_logger
from tvb.core.entities.model import model_operation
from import dao
from tvb.core.neocom import h5
from import ProjectService
from import StorageInterface

[docs] class ExportManager(object): """ This class provides basic methods for exporting data types of projects in different formats. """ all_exporters = {} # Dictionary containing all available exporters logger = get_logger(__name__) def __init__(self): # Here we register all available data type exporters # If new exporters supported, they should be added here self._register_exporter(TVBExporter()) self._register_exporter(TVBLinkedExporter()) self.storage_interface = StorageInterface() def _register_exporter(self, exporter): """ This method register into an internal format available exporters. :param exporter: Instance of a data type exporter (extends ABCExporter) """ if exporter is not None: self.all_exporters[exporter.__class__.__name__] = exporter
[docs] def get_exporters_for_data(self, data): """ Get available exporters for current data type. :returns: a dictionary with the {exporter_id : label} """ if data is None: raise InvalidExportDataException("Could not detect exporters for null data") self.logger.debug("Trying to determine exporters valid for %s" % data.type) results = {} # No exporter for None data if data is None: return results for exporterId in self.all_exporters.keys(): exporter = self.all_exporters[exporterId] if exporter.accepts(data): results[exporterId] = exporter.get_label() return results
[docs] def export_data(self, data, exporter_id, project, user_public_key=None): """ Export provided data using given exporter :param data: data type to be exported :param exporter_id: identifier of the exporter to be used :param project: project that contains data to be exported :param user_public_key: public key file used for encrypting data before exporting :returns: a tuple with the following elements 1. name of the file to be shown to user 2. full path of the export file (available for download) 3. boolean which specify if file can be deleted after download """ if data is None: raise InvalidExportDataException("Could not export null data. Please select data to be exported") if exporter_id is None: raise ExportException("Please select the exporter to be used for this operation") if exporter_id not in self.all_exporters: raise ExportException("Provided exporter identifier is not a valid one") exporter = self.all_exporters[exporter_id] if user_public_key is not None: public_key_path, encryption_password = self.storage_interface.prepare_encryption( if isinstance(user_public_key, (FieldStorage, Part)): with open(public_key_path, 'wb') as file_obj: self.storage_interface.copy_file(user_public_key.file, file_obj) else: shutil.copy2(user_public_key, public_key_path) else: public_key_path, encryption_password = None, None if project is None: raise ExportException("Please provide the project where data files are stored") # Now we start the real export if not exporter.accepts(data): raise InvalidExportDataException("Current data can not be exported by specified exporter") # Now compute and create folder where to store exported data # This will imply to generate a folder which is unique for each export export_data = None try: self.logger.debug("Start export of data: %s" % data.type) export_data = exporter.export(data, project, public_key_path, encryption_password) except Exception: pass return export_data
@staticmethod def _get_paths_of_linked_datatypes(project): linked_paths = ProjectService().get_linked_datatypes_storage_path(project) if not linked_paths: # do not export an empty operation return None, None # Make an import operation which will contain links to other projects algo = dao.get_algorithm_by_module(TVB_IMPORTER_MODULE, TVB_IMPORTER_CLASS) op = model_operation.Operation(None, None,, op.project = project op.algorithm = algo = 'links-to-external-projects' op.start_now() op.mark_complete(model_operation.STATUS_FINISHED) return linked_paths, op
[docs] def export_project(self, project): """ Given a project root and the TVB storage_path, create a ZIP ready for export. :param project: project object which identifies project to be exported """ if project is None: raise ExportException("Please provide project to be exported") folders_to_exclude = self._get_op_with_errors( linked_paths, op = self._get_paths_of_linked_datatypes(project) result_path = self.storage_interface.export_project(project, folders_to_exclude, linked_paths, op) return result_path
@staticmethod def _get_op_with_errors(project_id): """ Get the operation folders with error base name as list. """ operations = dao.get_operations_with_error_in_project(project_id) op_with_errors = [] for op in operations: op_with_errors.append( return op_with_errors
[docs] def export_simulator_configuration(self, burst_id): burst = dao.get_burst_by_id(burst_id) if burst is None: raise InvalidExportDataException("Could not find burst with ID " + str(burst_id)) op_folder = self.storage_interface.get_project_folder(, str(burst.fk_simulation)) all_view_model_paths, all_datatype_paths = h5.gather_references_of_view_model(burst.simulator_gid, op_folder) burst_path = h5.determine_filepath(burst.gid, op_folder) all_view_model_paths.append(burst_path) zip_filename = ABCExporter.get_export_file_name(burst, self.storage_interface.TVB_ZIP_FILE_EXTENSION) result_path = self.storage_interface.export_simulator_configuration(burst, all_view_model_paths, all_datatype_paths, zip_filename) return result_path