Index

_

__call__() (tvb.simulator.coupling.Coupling.PreSigmoidal method) __init__() (tvb.basic.neotraits.api.Attr method) (tvb.basic.neotraits.api.Dim method) (tvb.basic.neotraits.api.Final method) (tvb.basic.neotraits.api.Float method) (tvb.basic.neotraits.api.Int method) (tvb.basic.neotraits.api.List method) (tvb.basic.neotraits.api.NArray method) (tvb.simulator.noise.Noise method)

A

a (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.coupling.Difference attribute) (tvb.simulator.coupling.HyperbolicTangent attribute) (tvb.simulator.coupling.Kuramoto attribute) (tvb.simulator.coupling.Linear attribute) (tvb.simulator.coupling.Scaling attribute) (tvb.simulator.coupling.Sigmoidal attribute) (tvb.simulator.coupling.SigmoidalJansenRit attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) A (tvb.simulator.models.jansen_rit.JansenRit attribute) a (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.oscillator.SupHopf attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) a_1 (tvb.simulator.models.jansen_rit.JansenRit attribute) a_2 (tvb.simulator.models.jansen_rit.JansenRit attribute) a_3 (tvb.simulator.models.jansen_rit.JansenRit attribute) a_4 (tvb.simulator.models.jansen_rit.JansenRit attribute) a_E (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) a_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) a_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) a_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) A_ik (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) aa (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) ABCAdapter (class in tvb.core.adapters.abcadapter) ABCAdapterForm (class in tvb.core.adapters.abcadapter) ABCDisplayer (class in tvb.core.adapters.abcdisplayer) ABCExporter (class in tvb.adapters.exporters.abcexporter) ABCMappedArraySVGVisualizer (class in tvb.adapters.visualizers.matrix_viewer) ABCRemover (class in tvb.core.adapters.abcremover) ABCSpaceDisplayer (class in tvb.adapters.visualizers.time_series) ABCSurfaceDisplayer (class in tvb.adapters.visualizers.surface_view) ABCUploader (class in tvb.core.adapters.abcuploader) ABCUploaderForm (class in tvb.core.adapters.abcuploader) ABS_DIFF (tvb.analyzers.fmri_balloon.NeuralInputTransformations attribute) Absolute (class in tvb.datatypes.equations) ABSOLUTE (tvb.adapters.forms.equation_forms.TransferVectorEquationsEnum attribute) AbsoluteEquationForm (class in tvb.adapters.forms.equation_forms) accepted_filters() (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex static method) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex static method) (tvb.core.entities.model.model_datatype.DataType static method) accepts() (tvb.adapters.exporters.abcexporter.ABCExporter method) ACCESS_MODE_TVB_FILES (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) Accessor (class in tvb.core.neotraits._h5accessors) ACCOUNT_URL (tvb.interfaces.rest.commons.strings.Strings attribute) AdapterLaunchModeEnum (class in tvb.core.adapters.abcadapter) ADAPTERS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) add2session() (in module tvb.interfaces.web.controllers.common) add_at() (tvb.simulator.backend.ref.RefBase static method) add_branch_and_copy_to_session() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) add_child() (tvb.adapters.datatypes.db.annotation.AnnotationTerm method) add_condition() (tvb.core.entities.filters.chain.FilterChain method) add_encrypted_suffix() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) add_entries_to_config_file() (tvb.basic.config.stored.SettingsManager method) add_last_loaded_form_url_to_session() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) add_members_to_project() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.rest.server.facades.project_facade.ProjectFacade method) add_operation_additional_info() (tvb.core.adapters.abcadapter.ABCAdapter method) add_scientific_fields() (tvb.core.entities.transient.context_overlay.CommonDetails method) add_session() (in module tvb.core.entities.storage.session_maker) add_simulator_load_to_session() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) add_view_model_to_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) add_warning() (tvb.datatypes.surfaces.ValidationResult method) additional_info (tvb.core.entities.model.model_operation.Operation attribute) Additive (class in tvb.simulator.noise) ADDITIVE (tvb.adapters.forms.integrator_forms.NoiseTypesEnum attribute) AdditiveNoiseForm (class in tvb.adapters.forms.noise_forms) AdditiveNoiseViewModel (class in tvb.core.entities.file.simulator.view_model) administrator (tvb.core.entities.model.model_project.Project attribute) ADMINISTRATOR_BLANK_PWD (tvb.basic.config.settings.WebAdminSettings attribute) aee (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) aei (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) AfferentCoupling (class in tvb.simulator.monitors) AfferentCouplingTemporalAverage (class in tvb.simulator.monitors) after_store() (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex method) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex method) (tvb.core.entities.model.model_datatype.DataType method) aie (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) Aik (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) ALG_CLASSNAME (tvb.interfaces.rest.commons.strings.LinkPlaceholder attribute) ALG_MODULE (tvb.interfaces.rest.commons.strings.LinkPlaceholder attribute) Algorithm (class in tvb.core.entities.model.model_operation) algorithm (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) (tvb.core.entities.filters.chain.FilterChain attribute) (tvb.core.entities.model.model_operation.Operation attribute) algorithm_category (tvb.core.entities.filters.chain.FilterChain attribute) (tvb.core.entities.model.model_operation.Algorithm attribute) algorithm_category_replacement (tvb.core.entities.filters.chain.FilterChain attribute) algorithm_replacement (tvb.core.entities.filters.chain.FilterChain attribute) AlgorithmCategory (class in tvb.core.entities.model.model_operation) AlgorithmCategoryConfig (class in tvb.config.algorithm_categories) AlgorithmDto (class in tvb.interfaces.rest.commons.dtos) algorithms (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterModel attribute) AlgorithmService (class in tvb.core.services.algorithm_service) AlgorithmTransientGroup (class in tvb.core.entities.model.model_operation) ALL (tvb.basic.profile.TvbProfile attribute) all_exporters (tvb.adapters.exporters.export_manager.ExportManager attribute) ALLEN_CREATOR_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) ALLEN_CREATOR_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) ALLEN_MOUSE_CONNECTIVITY_CACHE_FOLDER (tvb.storage.h5.file.files_helper.FilesHelper attribute) AllenConnectModel (class in tvb.adapters.creators.allen_creator) AllenConnectomeBuilder (class in tvb.adapters.creators.allen_creator) AllenConnectomeBuilderForm (class in tvb.adapters.creators.allen_creator) ALLOW_NESTED_TRANSACTIONS (tvb.basic.config.settings.DBSettings attribute) Alpha (class in tvb.datatypes.equations) ALPHA (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) alpha (tvb.analyzers.fmri_balloon.BalloonModel attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) alpha_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) alpha_i (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) AlphaEquationForm (class in tvb.adapters.forms.equation_forms) amplitude (tvb.datatypes.spectral.FourierSpectrum attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) analytic() (tvb.simulator.monitors.EEG method) (tvb.simulator.monitors.iEEG method) (tvb.simulator.monitors.MEG method) (tvb.simulator.monitors.Projection method) ANALYZE_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) AnalyzeAlgorithmCategoryConfig (class in tvb.config.algorithm_categories) analyzed_datatype (tvb.core.entities.file.simulator.datatype_measure_h5.DatatypeMeasure attribute) ANALYZERS_ONLINE_HELP_SHORTCUTS (tvb.interfaces.web.structure.WebStructure attribute) ane (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) ani (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute)

annotations_index (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewModel attribute) annotations_length (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) AnnotationTerm (class in tvb.adapters.datatypes.db.annotation) any (tvb.basic.neotraits._attr.Dim attribute) APP_ENCRYPTION_HANDLER (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) app_encryption_handler() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler static method) (tvb.storage.storage_interface.StorageInterface static method) append() (tvb.core.neotraits._h5accessors.DataSet method) (tvb.core.neotraits.h5.DataSet method) append_data() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) append_to_path() (tvb.basic.config.environment.Environment method) applied_on (tvb.core.entities.model.model_datatype.StoredPSEFilter attribute) apply_corrections (tvb.adapters.uploaders.nifti_importer.NIFTIImporterModel attribute) apply_equation() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) apply_focal_point() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) apply_transfer_function() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) (tvb.interfaces.web.entities.context_transfer_vector.TransferVectorContext method) AREA_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) areas (tvb.datatypes.connectivity.Connectivity attribute) areas_volume_threshold() (in module tvb.adapters.creators.allen_creator) array (tvb.simulator.descriptors.NDArray.State attribute) array_data (tvb.adapters.datatypes.h5.structural_h5.VolumetricDataMixin attribute) (tvb.datatypes.fcd.Fcd attribute) (tvb.datatypes.graph.ConnectivityMeasure attribute) (tvb.datatypes.graph.CorrelationCoefficients attribute) (tvb.datatypes.graph.Covariance attribute) (tvb.datatypes.region_mapping.RegionMapping attribute) (tvb.datatypes.region_mapping.RegionVolumeMapping attribute) (tvb.datatypes.spectral.CoherenceSpectrum attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) (tvb.datatypes.spectral.FourierSpectrum attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) (tvb.datatypes.structural.StructuralMRI attribute) (tvb.datatypes.temporal_correlations.CrossCorrelation attribute) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporterModel attribute) array_data_max (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) array_data_mean (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) array_data_min (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) array_has_complex (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) array_is_finite (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) array_size2kb() (tvb.core.adapters.abcadapter.ABCAdapter static method) ArrayField (class in tvb.core.neotraits.forms) AsciiValidator (class in tvb.interfaces.web.controllers.settings_controller) ASP_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) astr() (in module tvb.simulator.common) ASYNC_DIFF_MEM (tvb.core.adapters.abcadapter.AdapterLaunchModeEnum attribute) async_launch_and_prepare_pse() (tvb.core.services.simulator_service.SimulatorService method) async_launch_and_prepare_simulation() (tvb.core.services.simulator_service.SimulatorService method) async_launch_simulation_on_server() (tvb.core.services.simulator_service.SimulatorService method) ASYNC_OP_LOG_FILE (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute) atlas (tvb.adapters.creators.siibra_creator.SiibraModel attribute) ATLAS_OPTS (in module tvb.adapters.creators.siibra_creator) ATT_UID (tvb.core.services.operation_service.OperationService attribute) Attr (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) ATTR_ONTOLOGY_DEFINITION (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_LABEL (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_RELATION (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_SYN (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_URI (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_TVB_ID (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_TVB_LABEL (tvb.adapters.uploaders.brco.parser.XMLParser attribute) AUTH_HEADER (tvb.interfaces.rest.commons.strings.Strings attribute) AUTH_URL (tvb.interfaces.rest.commons.strings.Strings attribute) AuthorizationManager (class in tvb.core.services.authorization) AuthorizationManagerMeta (class in tvb.core.services.authorization) AuthorizationRequestException auto_docstring() (in module tvb.basic.neotraits.info) average_power (tvb.datatypes.spectral.FourierSpectrum attribute) average_segments (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute)

B

b (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.coupling.HyperbolicTangent attribute) (tvb.simulator.coupling.Linear attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) B (tvb.simulator.models.jansen_rit.JansenRit attribute) b (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) (tvb.simulator.noise.Multiplicative attribute) b_E (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) b_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) b_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) b_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) B_ik (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) backend (tvb.simulator.simulator.Simulator attribute) BackendClient (class in tvb.core.services.backend_clients.backend_client) BackendClientFactory (class in tvb.core.services.backend_client_factory) background (tvb.adapters.visualizers.region_volume_mapping.BaseVolumeVisualizerModel attribute) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiserModel attribute) BadRequestException balloon_dfun() (tvb.analyzers.fmri_balloon.BalloonModel method) BalloonModel (class in tvb.analyzers.fmri_balloon) BalloonModelAdapter (class in tvb.adapters.analyzers.fmri_balloon_adapter) BalloonModelAdapterForm (class in tvb.adapters.analyzers.fmri_balloon_adapter) BalloonModelAdapterModel (class in tvb.adapters.analyzers.fmri_balloon_adapter) BARTLETT (tvb.datatypes.spectral.WindowingFunctionsEnum attribute) BASE_MODEL (tvb.simulator.models.ModelsEnum attribute) BASE_PATH (tvb.interfaces.rest.commons.strings.Strings attribute) base_url (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController attribute) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController attribute) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController attribute) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController attribute) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) base_url() (tvb.interfaces.web.controllers.users_controller.UserController method) BASE_VERSION (tvb.basic.config.settings.VersionSettings attribute) BaseBackend (class in tvb.simulator.backend.base) BaseBCT (class in tvb.adapters.analyzers.bct_adapters) BaseBCTForm (class in tvb.adapters.analyzers.bct_adapters) BaseBCTModel (class in tvb.adapters.analyzers.bct_adapters) BaseController (class in tvb.interfaces.web.controllers.base_controller) BaseDto (class in tvb.interfaces.rest.commons.dtos) BaseHistory (class in tvb.simulator.history) BaseRestException BaseSettingsProfile (class in tvb.basic.config.profile_settings) BaseStorageException BaseSurfaceViewerForm (class in tvb.adapters.visualizers.surface_view) BaseSurfaceViewerModel (class in tvb.adapters.visualizers.surface_view) BaseUndirected (class in tvb.adapters.analyzers.bct_adapters) BaseUnidirectedBCTForm (class in tvb.adapters.analyzers.bct_adapters) BaseVolumeVisualizerForm (class in tvb.adapters.visualizers.region_volume_mapping) BaseVolumeVisualizerModel (class in tvb.adapters.visualizers.region_volume_mapping) bb (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) BEARER (tvb.interfaces.rest.commons.strings.Strings attribute) beta (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) betweenness_bin() (in module tvb.analyzers.graph) bi_hemispheric (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.surfaces.Surface attribute) BIDSDataBuilder (class in tvb.interfaces.rest.bids_monitor.bids_data_builder) BIDSDirWatcher (class in tvb.interfaces.rest.bids_monitor.bids_dir_monitor) BIDSImporter (class in tvb.adapters.uploaders.bids_importer) BIDSImporterForm (class in tvb.adapters.uploaders.bids_importer) BIDSImporterModel (class in tvb.adapters.uploaders.bids_importer) Bik (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) BIN_FOLDER (tvb.basic.config.profile_settings.BaseSettingsProfile property)

binarized_weights (tvb.datatypes.connectivity.Connectivity property) BINARY_DATATYPE_ATTRIBUTE (tvb.core.adapters.abcdisplayer.URLGenerator attribute) BLACKMAN (tvb.datatypes.spectral.WindowingFunctionsEnum attribute) Bold (class in tvb.simulator.monitors) bold_model (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) BoldModels (class in tvb.analyzers.fmri_balloon) BoldMonitorEquationsEnum (class in tvb.adapters.forms.equation_forms) BoldMonitorForm (class in tvb.adapters.forms.monitor_forms) BoldRegionROI (class in tvb.simulator.monitors) BoldRegionROIViewModel (class in tvb.core.entities.file.simulator.view_model) BoldViewModel (class in tvb.core.entities.file.simulator.view_model) BOOL_VALUE_PREFIX (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager attribute) BoolField (class in tvb.core.neotraits.forms) bound_and_clamp() (tvb.simulator.integrators.Integrator method) bound_integration_state() (tvb.simulator.integrators.Integrator method) bound_state() (tvb.simulator.integrators.Integrator method) bounded_state_variable_indices (tvb.simulator.integrators.Integrator attribute) brain_skull (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.datatypes.projections.ProjectionMatrix attribute) BRAIN_SKULL_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) BrainSkull (class in tvb.datatypes.surfaces) BrainViewer (class in tvb.adapters.visualizers.brain) BrainViewerForm (class in tvb.adapters.visualizers.brain) BrainViewerModel (class in tvb.adapters.visualizers.brain) BRANCH_NAME_FORMAT (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController attribute) branch_simulation_state_gid (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) branch_simulator_configuration() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) BRCOImporter (class in tvb.adapters.uploaders.brco_importer) BRCOImporterForm (class in tvb.adapters.uploaders.brco_importer) BRCOImporterModel (class in tvb.adapters.uploaders.brco_importer) browser_login() (tvb.interfaces.rest.client.tvb_client.TVBClient method) buffer (tvb.simulator.history.DenseHistory attribute) BUFFER_CAPACITY (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute) buffer_data() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager.H5pyStorageBuffer method) build_adapter() (tvb.core.adapters.abcadapter.ABCAdapter static method) build_adapter_from_class() (tvb.core.adapters.abcadapter.ABCAdapter static method) build_base_h5_url() (tvb.core.adapters.abcdisplayer.URLGenerator static method) build_binary_datatype_attribute_url() (tvb.core.adapters.abcdisplayer.URLGenerator static method) build_connectivity_measure() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) build_datatype_filters() (tvb.core.entities.filters.factory.StaticFiltersFactory static method) build_db_engine() (in module tvb.core.entities.storage.session_maker) build_display_result() (tvb.core.adapters.abcdisplayer.ABCDisplayer method) build_float_value_wrapper() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) build_func() (tvb.simulator.backend.cu.CuBackend method) build_h5_url() (tvb.core.adapters.abcdisplayer.URLGenerator static method) build_handler() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandlerBuilder static method) build_int_value_wrapper() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) build_logger() (tvb.basic.logger.builder.LoggerBuilder method) build_monitor_url() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController static method) build_operation_from_file() (tvb.core.services.import_service.ImportService method) build_operations_filters() (tvb.core.entities.filters.factory.StaticFiltersFactory static method) build_params_for_selectable_connectivity() (tvb.adapters.visualizers.time_series.ABCSpaceDisplayer static method) build_params_for_subselectable_ts() (tvb.adapters.visualizers.time_series.ABCSpaceDisplayer method) build_path() (in module tvb.interfaces.rest.server.run) (tvb.interfaces.web.controllers.base_controller.BaseController static method) build_py_func() (tvb.simulator.backend.nb_mpr.NbMPRBackend method) (tvb.simulator.backend.np.NpBackend method) build_request_url() (tvb.interfaces.rest.client.main_api.MainApi method) build_url() (tvb.core.adapters.abcdisplayer.URLGenerator static method) BURST_CANCELED (tvb.core.entities.model.model_burst.BurstConfiguration attribute) burst_config (tvb.interfaces.web.entities.context_simulator.SimulatorContext property) BURST_ERROR (tvb.core.entities.model.model_burst.BurstConfiguration attribute) BURST_FINISHED (tvb.core.entities.model.model_burst.BurstConfiguration attribute) BURST_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) burst_preview() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) BURST_RUNNING (tvb.core.entities.model.model_burst.BurstConfiguration attribute) BurstBaseController (class in tvb.interfaces.web.controllers.burst.base_controller) BurstConfiguration (class in tvb.core.entities.model.model_burst) BurstConfigurationH5 (class in tvb.core.entities.file.simulator.burst_configuration_h5) BurstDAO (class in tvb.core.entities.storage.burst_dao) BurstService (class in tvb.core.services.burst_service) BurstServiceException

C

c (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) C (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) c (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) c_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) c_ee (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) c_ei (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) c_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) c_ie (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) c_ii (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) C_ik (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) cached_trait_property() (in module tvb.basic.neotraits._core) (in module tvb.basic.neotraits.api) CachedTraitProperty (class in tvb.basic.neotraits._core) calculate_complex_cross_coherence() (in module tvb.analyzers.node_complex_coherence) calculate_cross_coherence() (in module tvb.analyzers.node_coherence) calls (tvb.simulator.simulator.Simulator attribute) can_be_active() (tvb.core.adapters.abcadapter.ABCAdapter static method) CAN_ENCRYPT_STORAGE (tvb.basic.config.settings.WebSettings attribute) CAN_RUN_HPC (tvb.basic.config.settings.HPCSettings attribute) cancel_or_remove_burst() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) cancel_or_remove_operation() (tvb.interfaces.web.controllers.flow_controller.FlowController method) (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) CaseDAO (class in tvb.core.entities.storage.project_dao) category_name (tvb.config.algorithm_categories.AlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.AnalyzeAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.CreateAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.SimulateAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.UploadAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.ViewAlgorithmCategoryConfig attribute) center() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) (tvb.datatypes.surfaces.Surface method) center_vertices() (in module tvb.datatypes.surfaces) CentralityEigenVector (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityKCoreness (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityKCorenessBD (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityNodeBinary (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityNodeWeighted (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityShortcuts (class in tvb.adapters.analyzers.bct_centrality_adapters) centres (tvb.datatypes.connectivity.Connectivity attribute) centres_annular() (tvb.datatypes.connectivity.Connectivity method) centres_cubic() (tvb.datatypes.connectivity.Connectivity method) centres_spherical() (tvb.datatypes.connectivity.Connectivity method) CENTRES_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) CENTRES_TOKEN2 (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) centres_toroidal() (tvb.datatypes.connectivity.Connectivity method) cf() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) chained_validators (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.KeycloakLoginForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) change_outside_sub_dir() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) check_admin() (in module tvb.interfaces.web.controllers.decorators) check_and_delete() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) check_atlas_parcellation_compatible() (in module tvb.adapters.creators.siibra_base) check_compatibility() (tvb.simulator.backend.nb_mpr.NbMPRBackend method) (tvb.simulator.backend.np.NpBackend method) check_created() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) check_data() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) check_db_url() (tvb.core.services.settings_service.SettingsService method) (tvb.interfaces.web.controllers.settings_controller.SettingsController method) check_import_references() (tvb.core.services.import_service.ImportService static method) check_kc_user() (in module tvb.interfaces.web.controllers.decorators) check_kube_user() (in module tvb.interfaces.web.controllers.decorators) check_login() (tvb.core.services.user_service.UserService static method) check_operations_job() (tvb.core.services.hpc_operation_service.HPCOperationService static method) check_project_permission() (tvb.interfaces.rest.server.access_permissions.permissions.ProjectAccessPermission method) check_sso() (tvb.interfaces.web.controllers.users_controller.UserController method) check_token() (tvb.storage.kube.kube_notifier.KubeNotifier static method) check_upload_size() (tvb.interfaces.web.request_handler.RequestHandler static method) check_user() (in module tvb.interfaces.web.controllers.decorators) checkargbounds() (tvb.rateML.run.model_driver.Driver_Setup method) (tvb.rateML.run.model_driver_bold.Driver_Setup method) (tvb.rateML.run.model_driver_zerlaut.Driver_Setup method) checked (tvb.core.neotraits.forms.Option attribute) chunk_iter() (in module tvb.adapters.uploaders.tract_importer) Cik (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) clamp_integration_state() (tvb.simulator.integrators.Integrator method) clamp_state() (tvb.simulator.integrators.Integrator method) clamped_state_variable_indices (tvb.simulator.integrators.Integrator attribute) clamped_state_variable_values (tvb.simulator.integrators.Integrator attribute) classname (tvb.core.entities.model.model_operation.Algorithm attribute) clean_files_on_disk() (tvb.interfaces.web.request_handler.RequestHandler static method) clean_from_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) clean_project_data_from_session() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) clean_up() (tvb.interfaces.web.run.CleanupSessionHandler method) cleanup_encryption_handler() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler method) CleanupSessionHandler (class in tvb.interfaces.web.run) clear_histogram() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) ClientException clone() (tvb.core.entities.model.model_burst.BurstConfiguration method) close() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) close_file() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) close_session() (tvb.core.entities.storage.session_maker.SessionsStack method) close_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method) CLUSTER_NODE_NAME (tvb.basic.config.settings.ClusterSettings property) ClusteringCoefficient (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusteringCoefficientBU (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusteringCoefficientWD (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusteringCoefficientWU (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusterSchedulerClient (class in tvb.core.services.backend_clients.cluster_scheduler_client) ClusterSettings (class in tvb.basic.config.settings) ClusterTimedRotatingFileHandler (class in tvb.config.logger.cluster_handler) cmax (tvb.simulator.coupling.Sigmoidal attribute) (tvb.simulator.coupling.SigmoidalJansenRit attribute) cmin (tvb.simulator.coupling.Sigmoidal attribute) (tvb.simulator.coupling.SigmoidalJansenRit attribute) CODE (tvb.interfaces.rest.commons.strings.FormKeyInput attribute) CODE_CHECKED_TO_VERSION (tvb.config.profile_settings.TestSQLiteProfile attribute) CODE_GID (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CODE_OPERATION_GROUP_ID (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CODE_OPERATION_GROUP_NAME (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CODE_OPERATION_TAG (tvb.core.entities.transient.context_overlay.CommonDetails attribute) code_version (tvb.core.entities.model.model_burst.Dynamic attribute) CodeUpdateManager (class in tvb.core.code_versions.code_update_manager) coherence_mlab() (in module tvb.analyzers.node_coherence) CoherenceSpectrum (class in tvb.datatypes.spectral) CoherenceSpectrumH5 (class in tvb.adapters.datatypes.h5.spectral_h5) CoherenceSpectrumIndex (class in tvb.adapters.datatypes.db.spectral) cohort (tvb.adapters.creators.siibra_creator.SiibraModel attribute) COHORT_OPTS (in module tvb.adapters.creators.siibra_creator) COLON (tvb.adapters.uploaders.csv_connectivity_importer.CSVDelimiterOptionsEnum attribute) color_texture_to_list() (in module tvb.core.services.texture_to_json) colors (tvb.adapters.visualizers.connectivity.ConnectivityViewerModel attribute) coloured() (tvb.simulator.noise.Noise method), [1] COMMA (tvb.adapters.uploaders.csv_connectivity_importer.CSVDelimiterOptionsEnum attribute) command_initializer() (in module tvb.config.init.initializer) COMMAND_PROFILE (tvb.basic.profile.TvbProfile attribute) CommandSettingsProfile (class in tvb.config.profile_settings) CommonDetails (class in tvb.core.entities.transient.context_overlay) compare_with_ref() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) completion_date (tvb.core.entities.model.model_operation.Operation attribute) complex_coherence_result_shape() (in module tvb.analyzers.node_complex_coherence) ComplexCoherenceSpectrum (class in tvb.datatypes.spectral) ComplexCoherenceSpectrumH5 (class in tvb.adapters.datatypes.h5.spectral_h5) ComplexCoherenceSpectrumIndex (class in tvb.adapters.datatypes.db.spectral) Component2Modality (class in tvb.adapters.creators.siibra_base) component_time_series (tvb.datatypes.mode_decompositions.IndependentComponents attribute) (tvb.datatypes.mode_decompositions.PrincipalComponents attribute) compute() (tvb.datatypes.local_connectivity.LocalConnectivity method) compute_2d_view() (tvb.adapters.visualizers.matrix_viewer.ABCMappedArraySVGVisualizer method) compute_amplitude() (tvb.datatypes.spectral.FourierSpectrum method) (tvb.datatypes.spectral.WaveletCoefficients method) compute_available_disk_space() (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient static method) compute_average_power() (tvb.datatypes.spectral.FourierSpectrum method) compute_bursts_disk_size() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) compute_component_time_series() (tvb.datatypes.mode_decompositions.IndependentComponents method) (tvb.datatypes.mode_decompositions.PrincipalComponents method) compute_conn_branch_conditions() (tvb.core.services.simulator_service.SimulatorService static method) compute_continuous_wavelet_transform() (in module tvb.analyzers.wavelet) compute_data_for_gradient_view() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) compute_derived_parameters() (tvb.analyzers.fmri_balloon.BalloonModel method) compute_disk_size_for_started_ops() (tvb.core.entities.storage.operation_dao.OperationDAO method) compute_encrypted_folder_path() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler static method) compute_equation() (tvb.datatypes.surfaces.Surface method) compute_fast_fourier_transform() (in module tvb.analyzers.fft) compute_geodesic_distance_matrix() (tvb.datatypes.surfaces.Surface method) compute_hrf() (tvb.simulator.monitors.Bold method) compute_ica_decomposition() (in module tvb.analyzers.ica) compute_kuramoto_index_metric() (in module tvb.analyzers.metric_kuramoto_index) compute_local_connectivity() (tvb.datatypes.cortex.Cortex method) compute_mixing_matrix() (tvb.datatypes.mode_decompositions.IndependentComponents method) compute_norm_source() (tvb.datatypes.mode_decompositions.IndependentComponents method) (tvb.datatypes.mode_decompositions.PrincipalComponents method) compute_normalised_average_power() (tvb.datatypes.spectral.FourierSpectrum method) compute_normalised_component_time_series() (tvb.datatypes.mode_decompositions.IndependentComponents method) (tvb.datatypes.mode_decompositions.PrincipalComponents method) compute_operation_name() (tvb.core.entities.transient.context_overlay.CommonDetails static method) compute_parameters() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method) (tvb.adapters.visualizers.connectivity.Connectivity3DViewer static method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) compute_params() (tvb.adapters.visualizers.matrix_viewer.ABCMappedArraySVGVisualizer method) compute_pca() (in module tvb.analyzers.pca) compute_phase() (tvb.datatypes.spectral.FourierSpectrum method) (tvb.datatypes.spectral.WaveletCoefficients method) compute_phase_plane() (tvb.adapters.visualizers.phase_plane_interactive.PhaseLineD3 method) (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) compute_power() (tvb.datatypes.spectral.FourierSpectrum method) (tvb.datatypes.spectral.WaveletCoefficients method) compute_preview_parameters() (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method) compute_proxy_metastability_metric() (in module tvb.analyzers.metric_proxy_metastability) compute_raw_matrix_params() (tvb.adapters.visualizers.matrix_viewer.ABCMappedArraySVGVisualizer static method) compute_recursive_h5_disk_usage() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface static method) compute_region_labels() (tvb.datatypes.connectivity.Connectivity method) compute_required_info() (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) compute_size_on_disk() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface static method) compute_sparse_matrix() (tvb.datatypes.local_connectivity.LocalConnectivity method) compute_topography_data() (tvb.adapters.visualizers.topographic.TopographyCalculations static method) compute_topological_constants() (tvb.datatypes.surfaces.Surface method) compute_tract_lengths() (tvb.datatypes.connectivity.Connectivity method) compute_triangle_normals() (tvb.datatypes.surfaces.Surface method) compute_url() (tvb.interfaces.rest.commons.strings.RestLink method) compute_user_generated_disk_size() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) compute_variance_global_metric() (in module tvb.analyzers.metric_variance_global) compute_variance_of_node_variance_metric() (in module tvb.analyzers.metric_variance_of_node_variance) compute_vertex_normals() (tvb.datatypes.surfaces.Surface method) conductances (tvb.datatypes.projections.ProjectionMatrix attribute) conduction_speed (tvb.simulator.simulator.Simulator attribute) config_for_sim() (tvb.simulator.monitors.Bold method) (tvb.simulator.monitors.BoldRegionROI method) (tvb.simulator.monitors.EEG method) (tvb.simulator.monitors.Monitor method) (tvb.simulator.monitors.ProgressLogger method) (tvb.simulator.monitors.Projection method) (tvb.simulator.monitors.SpatialAverage method) configure() (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCTimeseriesMetricsAdapter method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.basic.neotraits._core.HasTraits method) (tvb.basic.neotraits.api.HasTraits method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.datatypes.connectivity.Connectivity method) (tvb.datatypes.cortex.Cortex method) (tvb.datatypes.sensors.Sensors method) (tvb.datatypes.spectral.FourierSpectrum method) (tvb.datatypes.surfaces.Surface method) (tvb.simulator.coupling.PreSigmoidal method) (tvb.simulator.integrators.Integrator method) (tvb.simulator.models.base.Model method) (tvb.simulator.models.hopfield.Hopfield method), [1] (tvb.simulator.models.stefanescu_jirsa.ReducedSetBase method) (tvb.simulator.models.wong_wang.ReducedWongWang method) (tvb.simulator.monitors.Projection method) (tvb.simulator.noise.Noise method) (tvb.simulator.simulator.Simulator method) configure_boundaries() (tvb.simulator.integrators.Integrator method) configure_coloured() (tvb.simulator.noise.Noise method) configure_integration_for_model() (tvb.simulator.simulator.Simulator method)

configure_matjax_doc() (in module tvb.interfaces.web.controllers.burst.matjax) configure_space() (tvb.datatypes.patterns.SpatialPattern method) (tvb.datatypes.patterns.StimuliRegion method) (tvb.datatypes.patterns.StimuliSurface method) configure_time() (tvb.datatypes.patterns.SpatioTemporalPattern method) configure_white() (tvb.simulator.noise.Noise method), [1] CONN_ZIP_FILE (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter attribute) Connectivity (class in tvb.datatypes.connectivity) connectivity (tvb.adapters.analyzers.bct_adapters.BaseBCTModel attribute) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorModel attribute) (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.h5.annotation_h5.ConnectivityAnnotations attribute) (tvb.adapters.uploaders.brco_importer.BRCOImporterModel attribute) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporterModel attribute) (tvb.adapters.uploaders.nifti_importer.NIFTIImporterModel attribute) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporterModel attribute) (tvb.adapters.visualizers.connectivity.ConnectivityViewerModel attribute) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundleModel attribute) (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel attribute) (tvb.datatypes.graph.ConnectivityMeasure attribute) (tvb.datatypes.patterns.StimuliRegion attribute) (tvb.datatypes.region_mapping.RegionMapping attribute) (tvb.datatypes.region_mapping.RegionVolumeMapping attribute) (tvb.datatypes.time_series.TimeSeriesRegion attribute) (tvb.simulator.simulator.Simulator attribute) Connectivity2DViewer (class in tvb.adapters.visualizers.connectivity) Connectivity3DViewer (class in tvb.adapters.visualizers.connectivity) CONNECTIVITY_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) CONNECTIVITY_FIELD (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController attribute) CONNECTIVITY_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) connectivity_index (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewModel attribute) connectivity_measure (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizerModel attribute) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiserModel attribute) (tvb.adapters.visualizers.surface_view.BaseSurfaceViewerModel attribute) CONNECTIVITY_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) ConnectivityAnnotations (class in tvb.adapters.datatypes.h5.annotation_h5) ConnectivityAnnotationsH5 (class in tvb.adapters.datatypes.h5.annotation_h5) ConnectivityAnnotationsIndex (class in tvb.adapters.datatypes.db.annotation) ConnectivityAnnotationsView (class in tvb.adapters.visualizers.annotations_viewer) ConnectivityAnnotationsViewForm (class in tvb.adapters.visualizers.annotations_viewer) ConnectivityAnnotationsViewModel (class in tvb.adapters.visualizers.annotations_viewer) ConnectivityCreator (class in tvb.adapters.creators.connectivity_creator) ConnectivityCreatorForm (class in tvb.adapters.creators.connectivity_creator) ConnectivityCreatorModel (class in tvb.adapters.creators.connectivity_creator) ConnectivityEdgeBundle (class in tvb.adapters.visualizers.connectivity_edge_bundle) ConnectivityEdgeBundleForm (class in tvb.adapters.visualizers.connectivity_edge_bundle) ConnectivityEdgeBundleModel (class in tvb.adapters.visualizers.connectivity_edge_bundle) ConnectivityH5 (class in tvb.adapters.datatypes.h5.connectivity_h5) ConnectivityIndex (class in tvb.adapters.datatypes.db.connectivity) ConnectivityMeasure (class in tvb.datatypes.graph) ConnectivityMeasureH5 (class in tvb.adapters.datatypes.h5.graph_h5) ConnectivityMeasureImporter (class in tvb.adapters.uploaders.connectivity_measure_importer) ConnectivityMeasureImporterForm (class in tvb.adapters.uploaders.connectivity_measure_importer) ConnectivityMeasureImporterModel (class in tvb.adapters.uploaders.connectivity_measure_importer) ConnectivityMeasureIndex (class in tvb.adapters.datatypes.db.graph) ConnectivityMeasureOnSurfaceViewer (class in tvb.adapters.visualizers.surface_view) ConnectivityMeasureOnSurfaceViewerForm (class in tvb.adapters.visualizers.surface_view) ConnectivityMeasureVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping) ConnectivityMeasureVolumeVisualizerForm (class in tvb.adapters.visualizers.region_volume_mapping) ConnectivityMeasureVolumeVisualizerModel (class in tvb.adapters.visualizers.region_volume_mapping) ConnectivityViewer (class in tvb.adapters.visualizers.connectivity) ConnectivityViewerForm (class in tvb.adapters.visualizers.connectivity) ConnectivityViewerModel (class in tvb.adapters.visualizers.connectivity) const_indices (tvb.simulator.history.SparseHistory attribute) construct_centres() (in module tvb.adapters.creators.allen_creator) construct_structural_conn() (in module tvb.adapters.creators.allen_creator) construct_tract_lengths() (in module tvb.adapters.creators.allen_creator) constructors (tvb.core.neotraits._h5accessors.SparseMatrix attribute) (tvb.core.neotraits.h5.SparseMatrix attribute) CONTAINER_INPUT_FOLDER (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) context_selected() (in module tvb.interfaces.web.controllers.decorators) ContinuousWaveletTransformAdapter (class in tvb.adapters.analyzers.wavelet_adapter) ContinuousWaveletTransformAdapterForm (class in tvb.adapters.analyzers.wavelet_adapter) convert_rst_to_html() (in module tvb.basic.neotraits.info) COOMBES_BYRNE (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) COOMBES_BYRNE_2D (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) CoombesByrne2DModelForm (class in tvb.adapters.forms.model_forms) CoombesByrneModelForm (class in tvb.adapters.forms.model_forms) COORDS_ROWS_KEY (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) COORDS_TOKEN (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) copy_file() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface static method) COPY_NAME_FORMAT (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController attribute) copy_simulator_configuration() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) copy_zip_entry_into_temp() (in module tvb.basic.readers) CorrelationCoefficients (class in tvb.datatypes.graph) CorrelationCoefficientsH5 (class in tvb.adapters.datatypes.h5.graph_h5) CorrelationCoefficientsIndex (class in tvb.adapters.datatypes.db.graph) Cortex (class in tvb.datatypes.cortex) CORTEX_FRAGMENT_KEY (tvb.adapters.forms.form_with_ranges.FormWithRanges attribute) CortexViewModel (class in tvb.core.entities.file.simulator.view_model) cortical (tvb.datatypes.connectivity.Connectivity attribute) CORTICAL (tvb.simulator.monitors.DefaultMasks attribute) CORTICAL_INFO (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) CORTICAL_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) CorticalSurface (class in tvb.datatypes.surfaces) Cosine (class in tvb.datatypes.equations) COSINE (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) CosineEquationForm (class in tvb.adapters.forms.equation_forms) count_all_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_bursts_with_name() (tvb.core.entities.storage.burst_dao.BurstDAO method) count_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_datatypes_in_burst() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_datatypes_in_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_filtered_operations() (tvb.core.services.project_service.ProjectService static method) count_projects_for_name() (tvb.core.entities.storage.project_dao.CaseDAO method) count_resulted_datatypes() (tvb.core.entities.storage.operation_dao.OperationDAO method) count_results (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) count_users_for_name() (tvb.core.entities.storage.project_dao.CaseDAO method) Coupling (class in tvb.simulator.coupling) coupling (tvb.simulator.simulator.Simulator attribute) COUPLING_FRAGMENT_KEY (tvb.adapters.forms.form_with_ranges.FormWithRanges attribute) coupling_strength (tvb.datatypes.cortex.Cortex attribute) coupling_terms (tvb.simulator.models.linear.Linear attribute) CouplingFunctionsEnum (class in tvb.adapters.forms.coupling_forms) Covariance (class in tvb.datatypes.graph) CovarianceH5 (class in tvb.adapters.datatypes.h5.graph_h5) CovarianceIndex (class in tvb.adapters.datatypes.db.graph) cr (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) create_archive() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) create_bids_dataset() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) create_dataset_json_files() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) create_dataset_subjects() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) create_date (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.entities.transient.structure_entities.DataTypeMetaData property) (tvb.core.neotraits.db.HasTraitsIndex attribute) create_eeg_ts() (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter method) create_file_order() (in module tvb.adapters.creators.allen_creator) create_link() (tvb.core.services.algorithm_service.AlgorithmService static method) create_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) create_new() (tvb.interfaces.web.controllers.users_controller.UserController method) create_project() (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.rest.server.facades.project_facade.ProjectFacade method) CREATE_PROJECT_DESCRIPTION (tvb.interfaces.rest.commons.strings.FormKeyInput attribute) CREATE_PROJECT_NAME (tvb.interfaces.rest.commons.strings.FormKeyInput attribute) create_region_labels() (tvb.datatypes.connectivity.Connectivity method) create_region_ts() (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter method) create_row_of_specs() (tvb.interfaces.web.controllers.flow_controller.FlowController method) create_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) create_temp_folder() (in module tvb.interfaces.rest.commons.files_helper) create_time_series() (tvb.simulator.monitors.BoldRegionROI method) (tvb.simulator.monitors.EEG method) (tvb.simulator.monitors.GlobalAverage method) (tvb.simulator.monitors.iEEG method) (tvb.simulator.monitors.MEG method) (tvb.simulator.monitors.Monitor method) (tvb.simulator.monitors.SpatialAverage method) create_tvb_connectivity_measure() (in module tvb.adapters.creators.siibra_base) create_tvb_structural_connectivity() (in module tvb.adapters.creators.siibra_base) create_user() (tvb.core.services.user_service.UserService method) create_view_model() (tvb.core.services.import_service.ImportService method) CreateAlgorithmCategoryConfig (class in tvb.config.algorithm_categories) createlink() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) cross_spectrum (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) CrossCoherenceVisualizer (class in tvb.adapters.visualizers.cross_coherence) CrossCoherenceVisualizerForm (class in tvb.adapters.visualizers.cross_coherence) CrossCoherenceVisualizerModel (class in tvb.adapters.visualizers.cross_coherence) CrossCorrelateAdapter (class in tvb.adapters.analyzers.cross_correlation_adapter) CrossCorrelateAdapterForm (class in tvb.adapters.analyzers.cross_correlation_adapter) CrossCorrelateAdapterModel (class in tvb.adapters.analyzers.cross_correlation_adapter) CrossCorrelation (class in tvb.datatypes.temporal_correlations) CrossCorrelationH5 (class in tvb.adapters.datatypes.h5.temporal_correlations_h5) CrossCorrelationIndex (class in tvb.adapters.datatypes.db.temporal_correlations) CrossCorrelationVisualizer (class in tvb.adapters.visualizers.cross_correlation) CrossCorrelationVisualizerForm (class in tvb.adapters.visualizers.cross_correlation) CrossCorrelationVisualizerModel (class in tvb.adapters.visualizers.cross_correlation) CRYPT_BUFFER_SIZE (tvb.basic.config.settings.HPCSettings attribute) CRYPT_PASS_SIZE (tvb.basic.config.settings.HPCSettings attribute) CRYPTO_PASS (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) CSCS_DATA_FOLDER (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) CSCS_LOGIN_TOKEN_ENV_KEY (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) CSCS_PROJECT (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) CSVConnectivityImporter (class in tvb.adapters.uploaders.csv_connectivity_importer) CSVConnectivityImporterForm (class in tvb.adapters.uploaders.csv_connectivity_importer) CSVConnectivityImporterModel (class in tvb.adapters.uploaders.csv_connectivity_importer) CSVConnectivityParser (class in tvb.adapters.uploaders.csv_connectivity_importer) CSVDelimiterOptionsEnum (class in tvb.adapters.uploaders.csv_connectivity_importer) CuBackend (class in tvb.simulator.backend.cu) current (tvb.basic.profile.TvbProfile attribute) current_page (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) CURRENT_PROFILE_NAME (tvb.basic.profile.TvbProfile attribute) current_session (tvb.core.entities.storage.session_maker.SessionsStack property) current_state (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) (tvb.simulator.history.DenseHistory attribute) current_step (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) (tvb.simulator.simulator.Simulator attribute) custom_hook() (tvb.interfaces.rest.commons.decoders.CustomDecoder static method) CustomDecoder (class in tvb.interfaces.rest.commons.decoders) cutoff (tvb.datatypes.local_connectivity.LocalConnectivity attribute) CUTOFF_FIELD (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController attribute) cv (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) cvar (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.kuramoto.KuramotoT attribute) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.models.base.Model attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.hopfield.Hopfield attribute) (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) (tvb.simulator.models.linear.Linear attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.oscillator.Kuramoto attribute) (tvb.simulator.models.oscillator.SupHopf attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) cvars (tvb.simulator.history.BaseHistory attribute)

D

d (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) d_Ca (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) d_E (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) d_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) d_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) d_K (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) d_Na (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) d_V (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) d_Z (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) DAO (class in tvb.core.entities.storage) data (tvb.datatypes.time_series.TimeSeries attribute) data_0 (tvb.adapters.visualizers.topographic.TopographicViewerModel attribute) data_1 (tvb.adapters.visualizers.topographic.TopographicViewerModel attribute) data_2 (tvb.adapters.visualizers.eeg_monitor.EegMonitorModel attribute) (tvb.adapters.visualizers.topographic.TopographicViewerModel attribute) data_3 (tvb.adapters.visualizers.eeg_monitor.EegMonitorModel attribute) data_encryption_handler() (tvb.interfaces.web.controllers.kube_controller.KubeController method) data_file (tvb.adapters.uploaders.brco_importer.BRCOImporterModel attribute) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporterModel attribute) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporterModel attribute) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporterModel attribute) (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute) (tvb.adapters.uploaders.nifti_importer.NIFTIImporterModel attribute) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporterModel attribute) (tvb.adapters.uploaders.tract_importer.TrackImporterModel attribute) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporterModel attribute) (tvb.adapters.uploaders.tvb_importer.TVBImporterModel attribute) data_file_part2 (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporterModel attribute) DATA_IN_PROJECT (tvb.interfaces.rest.commons.strings.RestLink attribute) data_length_1d (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) data_length_2d (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) data_length_3d (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) data_length_4d (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) data_name (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.h5.mapped_value_h5.ValueWrapper attribute) data_ndim (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) data_slice (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerModel attribute) DATA_STATE (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_SUBJECT (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) data_subject (tvb.core.neotraits.uploader_view_model.UploaderViewModel attribute) DATA_TAG_1 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_2 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_3 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_4 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_5 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TITLE (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) data_type (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.h5.mapped_value_h5.ValueWrapper attribute) DATA_TYPES_PAGE_SIZE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) data_value (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.h5.mapped_value_h5.ValueWrapper attribute) DATA_VERSION (tvb.basic.config.settings.VersionSettings attribute) DATA_VERSION_ATTRIBUTE (tvb.basic.config.settings.VersionSettings attribute) DataEncryptionHandler (class in tvb.storage.h5.encryption.data_encryption_handler) DataEncryptionHandlerBuilder (class in tvb.storage.h5.encryption.data_encryption_handler) DataEncryptionHandlerMeta (class in tvb.storage.h5.encryption.data_encryption_handler) DataEncryptionRemoteHandler (class in tvb.storage.h5.encryption.data_encryption_handler) DataSet (class in tvb.core.neotraits._h5accessors) (class in tvb.core.neotraits.h5) dataset_name (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporterModel attribute) (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixImporterModel attribute) DataSetMetaData (class in tvb.core.neotraits._h5accessors) DataType (class in tvb.core.entities.model.model_datatype) datatype (tvb.adapters.uploaders.mat_timeseries_eeg_importer.EEGMatTimeSeriesImporterModel attribute) (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizerModel attribute) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizerModel attribute) (tvb.adapters.visualizers.ica.ICAModel attribute) (tvb.adapters.visualizers.matrix_viewer.MatrixVisualizerModel attribute) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizerModel attribute) (tvb.core.entities.filters.chain.FilterChain attribute) DATATYPE_ATTRIBUTE (tvb.core.adapters.abcdisplayer.URLGenerator attribute) datatype_details() (in module tvb.interfaces.command.lab) DATATYPE_EXTRA_INFO (tvb.interfaces.rest.commons.strings.RestLink attribute) datatype_filter (tvb.core.entities.model.model_operation.Algorithm attribute) DATATYPE_GID (tvb.interfaces.rest.commons.strings.LinkPlaceholder attribute) datatype_group (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapterModel attribute) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapterModel attribute) DATATYPE_OPERATIONS (tvb.interfaces.rest.commons.strings.RestLink attribute) datatype_replacement (tvb.core.entities.filters.chain.FilterChain attribute) DataTypeAccessPermission (class in tvb.interfaces.rest.server.access_permissions.permissions) DatatypeDAO (class in tvb.core.entities.storage.datatype_dao) DataTypeDto (class in tvb.interfaces.rest.commons.dtos) DatatypeFacade (class in tvb.interfaces.rest.server.facades.datatype_facade) DataTypeGidAttr (class in tvb.core.neotraits.view_model) DataTypeGroup (class in tvb.core.entities.model.model_datatype) DatatypeGroupImportException DataTypeMatrix (class in tvb.core.entities.model.model_datatype) DataTypeMatrixH5 (class in tvb.adapters.datatypes.h5.spectral_h5) DatatypeMeasure (class in tvb.core.entities.file.simulator.datatype_measure_h5) DatatypeMeasureH5 (class in tvb.core.entities.file.simulator.datatype_measure_h5) DatatypeMeasureIndex (class in tvb.adapters.datatypes.db.mapped_value) DataTypeMetaData (class in tvb.core.entities.transient.structure_entities) DataTypeOverlayDetails (class in tvb.core.entities.transient.context_overlay) DATATYPES (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) (tvb.interfaces.rest.commons.strings.RestNamespace attribute) datatypes_number (tvb.core.entities.model.model_burst.BurstConfiguration attribute) date2string() (in module tvb.core.utils) (in module tvb.storage.h5.utils) DATE_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) DATE_TIME_FORMAT (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager attribute) DATETIME_VALUE_PREFIX (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager attribute) DB_STRUCTURE_VERSION (tvb.basic.config.settings.VersionSettings attribute) DBSettings (class in tvb.basic.config.settings) dec_queue_count() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) dec_running_op_count() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) declarative_attrs (tvb.basic.neotraits._declarative_base.MetaType property) declarative_count (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.AsciiValidator attribute) (tvb.interfaces.web.controllers.settings_controller.DiskSpaceValidator attribute) (tvb.interfaces.web.controllers.settings_controller.PortValidator attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.settings_controller.SurfaceVerticesNrValidator attribute) (tvb.interfaces.web.controllers.settings_controller.ThreadNrValidator attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.KeycloakLoginForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) (tvb.interfaces.web.controllers.users_controller.UniqueUsername attribute) declarative_props (tvb.basic.neotraits._declarative_base.MetaType property) DECO_BALANCED_EXC_INH (tvb.simulator.models.ModelsEnum attribute) decrypt_content() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) decrypt_files_to_dir() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler method) decrypt_results_to_dir() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler method) DECRYPTED_DATA_SUFFIX (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler attribute) default() (tvb.core.neotraits._h5accessors.JsonFinal.StateVariablesEncoder method) (tvb.core.utils.TVBJSONEncoder method) (tvb.interfaces.web.controllers.flow_controller.FlowController method) (tvb.simulator.backend.base.BaseBackend static method) DEFAULT_ADMIN_EMAIL (tvb.basic.config.settings.WebAdminSettings attribute) DEFAULT_COLOR (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) default_equation (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm attribute) default_generation_folder() (tvb.rateML.XML2model.RateML static method) default_mask (tvb.simulator.monitors.SpatialAverage attribute) default_spatial (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm attribute) DEFAULT_STORAGE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) (tvb.config.profile_settings.TestSQLiteProfile attribute) DEFAULT_SUBJECT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) default_temporal (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm attribute) default_transfer_function (tvb.adapters.forms.transfer_vector_form.TransferVectorForm attribute) default_XML_folder() (tvb.rateML.XML2model.RateML static method) defaultdatastate (tvb.config.algorithm_categories.AlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.CreateAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.UploadAlgorithmCategoryConfig attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) DefaultMasks (class in tvb.simulator.monitors) Degree (class in tvb.adapters.analyzers.bct_degree_adapters) DegreeIOD (class in tvb.adapters.analyzers.bct_degree_adapters) delayed_state (tvb.simulator.history.DenseHistory attribute) delays (tvb.datatypes.connectivity.Connectivity attribute) (tvb.simulator.history.BaseHistory attribute)

delete_entries_from_config_file() (tvb.basic.config.stored.SettingsManager method) delete_members_for_project() (tvb.core.entities.storage.project_dao.CaseDAO method) delete_project() (tvb.core.entities.storage.project_dao.CaseDAO method) delete_user() (tvb.core.services.user_service.UserService method) Delta (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) DenseHistory (class in tvb.simulator.history) DensityDirected (class in tvb.adapters.analyzers.bct_degree_adapters) DensityUndirected (class in tvb.adapters.analyzers.bct_degree_adapters) description (tvb.core.entities.model.model_operation.Algorithm attribute) (tvb.core.entities.model.model_project.Project attribute) (tvb.interfaces.rest.commons.dtos.OperationDto property) DESCRIPTION_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) determine_adapter_class() (tvb.core.adapters.abcadapter.ABCAdapter static method) determine_datatype_from_file() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) determine_default_metrics() (tvb.adapters.visualizers.pse.PSEDiscreteGroupModel method) determine_filepath() (in module tvb.core.neocom.h5) determine_indexes_for_chosen_vars_of_interest() (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel method) determine_operation_result() (tvb.adapters.visualizers.pse.PSEModel method) determine_projection_type() (in module tvb.adapters.uploaders.projection_matrix_importer) determine_type() (tvb.core.neotraits._h5core.H5File static method) (tvb.core.neotraits.h5.H5File static method) detrend (tvb.adapters.analyzers.fourier_adapter.FFTAdapterModel attribute) detrend_ts (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) dfun() (tvb.rateML.generatedModels.epileptor.EpileptorT method) (tvb.rateML.generatedModels.kuramoto.KuramotoT method) (tvb.rateML.generatedModels.montbrio.MontbrioT method) (tvb.rateML.generatedModels.oscillator.OscillatorT method) (tvb.rateML.generatedModels.rwongwang.RwongwangT method) (tvb.simulator.models.base.Model method) (tvb.simulator.models.epileptor.Epileptor method) (tvb.simulator.models.epileptor.Epileptor2D method) (tvb.simulator.models.hopfield.Hopfield method) (tvb.simulator.models.jansen_rit.JansenRit method) (tvb.simulator.models.jansen_rit.ZetterbergJansen method) (tvb.simulator.models.larter_breakspear.LarterBreakspear method) (tvb.simulator.models.linear.Linear method) (tvb.simulator.models.oscillator.Generic2dOscillator method), [1] (tvb.simulator.models.oscillator.Kuramoto method) (tvb.simulator.models.oscillator.SupHopf method) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo method) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose method) (tvb.simulator.models.wilson_cowan.WilsonCowan method) (tvb.simulator.models.wong_wang.ReducedWongWang method) dfunDyn() (tvb.simulator.models.hopfield.Hopfield method) dict_array() (tvb.core.neotraits._h5accessors.JsonFinal.StateVariablesDecoder method) dictionary_builder() (in module tvb.adapters.creators.allen_creator) Difference (class in tvb.simulator.coupling) DIFFERENCE (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) DIFFERENCE_EQUATION (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) DifferenceCouplingForm (class in tvb.adapters.forms.coupling_forms) Dim (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) (class in tvb.simulator.descriptors) DirLoader (class in tvb.core.neocom._h5loader) disable_fields (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) disable_imports (tvb.core.entities.model.model_project.Project attribute) DISCRETE (tvb.adapters.forms.equation_forms.SpatialEquationsEnum attribute) DISCRETE_PSE_ADAPTER_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) DISCRETE_PSE_ADAPTER_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) DiscreteEquation (class in tvb.datatypes.equations) DiscretePSE (class in tvb.adapters.visualizers.pse) DiscretePSEAdapter (class in tvb.adapters.visualizers.pse_discrete) DiscretePSEAdapterForm (class in tvb.adapters.visualizers.pse_discrete) DiscretePSEAdapterModel (class in tvb.adapters.visualizers.pse_discrete) disk_size (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) DiskSpaceValidator (class in tvb.interfaces.web.controllers.settings_controller) display (tvb.config.algorithm_categories.AlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.ViewAlgorithmCategoryConfig attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) display_connectivity() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController static method) display_full_errors() (tvb.interfaces.web.controllers.common.InvalidFormValues method) display_name (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorModel attribute) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorModel attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorModel attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex property) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex property) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex property) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex property) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex property) (tvb.adapters.datatypes.db.sensors.SensorsIndex property) (tvb.adapters.datatypes.db.surface.SurfaceIndex property) (tvb.core.entities.model.model_datatype.DataType property) (tvb.core.entities.model.model_project.User attribute) DISPLAY_NAME_FIELD (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController attribute) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController attribute) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) display_surface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) display_type (tvb.core.entities.model.model_datatype.DataType property) displayname (tvb.core.entities.model.model_operation.Algorithm attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) (tvb.interfaces.rest.commons.dtos.OperationDto property) displayresultfigures() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) displayzoomedimage() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) distance_inv() (in module tvb.analyzers.graph) DistanceDBIN (class in tvb.adapters.analyzers.bct_adapters) DistanceDWEI (class in tvb.adapters.analyzers.bct_adapters) DistanceNETW (class in tvb.adapters.analyzers.bct_adapters) DistanceRDA (class in tvb.adapters.analyzers.bct_adapters) DistanceRDM (class in tvb.adapters.analyzers.bct_adapters) DISTANCES_FILE (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) do_operation_launch() (in module tvb.core.operation_async_launcher) (in module tvb.core.operation_hpc_launcher) do_rest_call_to_pod() (tvb.storage.kube.kube_notifier.KubeNotifier static method) do_step() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) Dop853 (class in tvb.simulator.integrators) Dop853Stochastic (class in tvb.simulator.integrators) Dop853StochasticViewModel (class in tvb.core.entities.file.simulator.view_model) Dop853ViewModel (class in tvb.core.entities.file.simulator.view_model) DOP_853 (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) DOP_853_STOCHASTIC (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) Dopri5 (class in tvb.simulator.integrators) Dopri5Stochastic (class in tvb.simulator.integrators) Dopri5StochasticViewModel (class in tvb.core.entities.file.simulator.view_model) Dopri5ViewModel (class in tvb.core.entities.file.simulator.view_model) DOPRI_5 (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) DOPRI_5_STOCHASTIC (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) DOUBLE_EXPONENTIAL_KERNEL (tvb.adapters.forms.equation_forms.BoldMonitorEquationsEnum attribute) DoubleExponential (class in tvb.datatypes.equations) DoubleExponentialEquationForm (class in tvb.adapters.forms.equation_forms) DoubleGaussian (class in tvb.datatypes.equations) DoubleGaussianEquationForm (class in tvb.adapters.forms.equation_forms) downgrade() (in module tvb.config.init.alembic.versions.32d4bf9f8ghj_update_db_004) download_an_construct_matrix() (in module tvb.adapters.creators.allen_creator) downloaddatatype() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) downloadimage() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) downloadproject() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) draw_discrete_exploration() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) draw_isocline_exploration() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) Driver_Execute (class in tvb.rateML.run.model_driver) (class in tvb.rateML.run.model_driver_bold) (class in tvb.rateML.run.model_driver_zerlaut) Driver_Setup (class in tvb.rateML.run.model_driver) (class in tvb.rateML.run.model_driver_bold) (class in tvb.rateML.run.model_driver_zerlaut) dt (tvb.simulator.integrators.Integrator attribute) (tvb.simulator.monitors.Monitor attribute) DtLoader (class in tvb.core.neocom._h5loader) dtype (tvb.simulator.descriptors.NDArray attribute) DualBrainViewer (class in tvb.adapters.visualizers.brain) DualBrainViewerForm (class in tvb.adapters.visualizers.brain) DualBrainViewerModel (class in tvb.adapters.visualizers.brain) DUMONT_GUTKIN (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) DumontGutkinModelForm (class in tvb.adapters.forms.model_forms) dump_with_precision() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) duplicate() (tvb.basic.neotraits._core.HasTraits method) (tvb.basic.neotraits.api.HasTraits method) (tvb.datatypes.time_series.TimeSeries method) (tvb.simulator.simulator.Simulator method) Dynamic (class in tvb.core.entities.model.model_burst) (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller) dynamic (tvb.simulator.coupling.PreSigmoidal attribute) (tvb.simulator.models.hopfield.Hopfield attribute) dynamic_detail() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) dynamic_ids (tvb.core.entities.model.model_burst.BurstConfiguration attribute) DynamicModelController (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller) DynamicSelectField (class in tvb.core.neotraits.forms)

E

e (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) E0 (tvb.analyzers.fmri_balloon.BalloonModel attribute) e0 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) e_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) edge_lengths (tvb.datatypes.surfaces.Surface property) edge_max_length (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.surfaces.Surface attribute) edge_mean_length (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.surfaces.Surface attribute) edge_min_length (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.surfaces.Surface attribute) edge_triangles (tvb.datatypes.surfaces.Surface property) edges (tvb.datatypes.surfaces.Surface property) edit_model_parameters() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) edit_result_figure() (tvb.core.services.figure_service.FigureService method) edit_user() (tvb.core.services.user_service.UserService method) EditForm (class in tvb.interfaces.web.controllers.project.project_controller) editone() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) EditPreview (class in tvb.interfaces.web.controllers.project.figure_controller) editresultfigures() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) editstructure() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) EditUserForm (class in tvb.interfaces.web.controllers.users_controller) EEG (class in tvb.simulator.monitors) (tvb.datatypes.projections.ProjectionsTypeEnum attribute) EEG_CAP_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) EEGCap (class in tvb.datatypes.surfaces) EEGMatTimeSeriesImporterModel (class in tvb.adapters.uploaders.mat_timeseries_eeg_importer) EegMonitor (class in tvb.adapters.visualizers.eeg_monitor) EEGMonitorForm (class in tvb.adapters.forms.monitor_forms) EegMonitorForm (class in tvb.adapters.visualizers.eeg_monitor) EegMonitorModel (class in tvb.adapters.visualizers.eeg_monitor) EEGRegionMatTimeSeriesImporterForm (class in tvb.adapters.uploaders.mat_timeseries_eeg_importer) EEGRegionTimeSeriesImporter (class in tvb.adapters.uploaders.mat_timeseries_eeg_importer) EEGViewModel (class in tvb.core.entities.file.simulator.view_model) efficiency_bin() (in module tvb.analyzers.graph) ElasticQueueHandler (class in tvb.config.logger.elasticsearch_handler) ELEM_ROOT (tvb.storage.h5.file.xml_metadata_handlers.XMLWriter attribute) email (tvb.core.entities.model.model_project.User attribute) EmailException emit() (tvb.config.logger.elasticsearch_handler.ElasticQueueHandler method) empty_msg (tvb.interfaces.web.controllers.users_controller.KeycloakLoginForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) encrypt_and_save_password() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) encrypt_data_at_export() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) encrypt_inputs() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler method) encrypt_password() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler static method) encrypted_aes_key (tvb.core.neotraits.uploader_view_model.UploaderViewModel attribute) ENCRYPTED_DATA_SUFFIX (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler attribute) encrypted_dir_name_regex (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler attribute) ENCRYPTED_FOLDER_SUFFIX (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) ENCRYPTED_PASSWORD_NAME (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler attribute) encrypted_suffix (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler attribute) encryption_config() (tvb.interfaces.web.controllers.hpc_controller.HPCController method) encryption_enabled() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler static method) (tvb.storage.storage_interface.StorageInterface static method) EncryptionHandler (class in tvb.storage.h5.encryption.encryption_handler) end_watcher() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) ends_with_tvb_file_extension() (tvb.storage.storage_interface.StorageInterface method) ends_with_tvb_storage_file_extension() (tvb.storage.storage_interface.StorageInterface method) EnhancedDictionary (class in tvb.basic.config.utils) ensure_background() (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) ensure_correct_prefix_for_param_name() (tvb.adapters.forms.form_with_ranges.FormWithRanges static method) ensure_float() (in module tvb.core.neotraits.db) ensure_int() (in module tvb.core.neotraits.db) ensure_shell_surface() (in module tvb.adapters.visualizers.surface_view) Enum (class in tvb.core.neotraits._h5accessors) EnumAttr (class in tvb.basic.neotraits._attr) env (tvb.basic.profile.TvbProfile attribute) Environment (class in tvb.basic.config.environment) Epileptor (class in tvb.simulator.models.epileptor) EPILEPTOR (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) Epileptor2D (class in tvb.simulator.models.epileptor) Epileptor2DModelForm (class in tvb.adapters.forms.model_forms) EPILEPTOR_2D (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) EPILEPTOR_CODIM_3 (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) EPILEPTOR_CODIM_3_SLOW (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) EPILEPTOR_RS (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) EpileptorCodim3ModelForm (class in tvb.adapters.forms.model_forms) EpileptorCodim3SlowModModelForm (class in tvb.adapters.forms.model_forms) EpileptorModelForm (class in tvb.adapters.forms.model_forms) EpileptorRestingStateModelForm (class in tvb.adapters.forms.model_forms) EpileptorT (class in tvb.rateML.generatedModels.epileptor) epoch_length (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) epsilon (tvb.analyzers.fmri_balloon.BalloonModel attribute) Equation (class in tvb.datatypes.equations) equation (tvb.datatypes.equations.Absolute attribute) (tvb.datatypes.equations.Alpha attribute) (tvb.datatypes.equations.Cosine attribute) (tvb.datatypes.equations.DiscreteEquation attribute) (tvb.datatypes.equations.DoubleExponential attribute) (tvb.datatypes.equations.DoubleGaussian attribute) (tvb.datatypes.equations.Equation attribute) (tvb.datatypes.equations.FirstOrderVolterra attribute) (tvb.datatypes.equations.Gamma attribute) (tvb.datatypes.equations.Gaussian attribute) (tvb.datatypes.equations.GeneralizedSigmoid attribute) (tvb.datatypes.equations.Identity attribute) (tvb.datatypes.equations.Linear attribute) (tvb.datatypes.equations.Logarithm attribute) (tvb.datatypes.equations.MixtureOfGammas attribute) (tvb.datatypes.equations.PulseTrain attribute) (tvb.datatypes.equations.RescaleInterval attribute) (tvb.datatypes.equations.Sigmoid attribute) (tvb.datatypes.equations.Sinusoid attribute) (tvb.datatypes.local_connectivity.LocalConnectivity attribute)

EQUATION_FIELD (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController attribute) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController attribute) equation_field_label (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm attribute) EQUATION_PARAMS_FIELD (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController attribute) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController attribute) EquationAttr (class in tvb.core.neotraits.view_model) EquationForm (class in tvb.adapters.forms.equation_forms) EquationPlotForm (class in tvb.adapters.forms.equation_plot_forms) EquationScalar (class in tvb.core.neotraits._h5accessors) EquationsEnum (class in tvb.datatypes.equations) EquationSpatialPlotForm (class in tvb.adapters.forms.equation_plot_forms) EquationTemporalPlotForm (class in tvb.adapters.forms.equation_plot_forms) error() (tvb.interfaces.web.controllers.base_controller.BaseController method) error_message (tvb.core.entities.model.model_burst.BurstConfiguration attribute) es_icvar (tvb.simulator.history.DenseHistory attribute) es_idelays (tvb.simulator.history.DenseHistory attribute) es_node_ids (tvb.simulator.history.DenseHistory attribute) es_weights (tvb.simulator.history.DenseHistory attribute) estimated_disk_size (tvb.core.entities.model.model_operation.Operation attribute) eta (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) EULER (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) EULER_MARUYAMA (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) EulerDeterministic (class in tvb.simulator.integrators) EulerDeterministicViewModel (class in tvb.core.entities.file.simulator.view_model) EulerStochastic (class in tvb.simulator.integrators) EulerStochasticViewModel (class in tvb.core.entities.file.simulator.view_model) eval_module() (tvb.simulator.backend.nb_mpr.NbMPRBackend method) (tvb.simulator.backend.np.NpBackend method) eval_source() (tvb.simulator.backend.nb_mpr.NbMPRBackend method) (tvb.simulator.backend.np.NpBackend method) evaluate() (tvb.analyzers.fmri_balloon.BalloonModel method) (tvb.datatypes.equations.DoubleExponential method) (tvb.datatypes.equations.Equation method) (tvb.datatypes.equations.Gamma method) (tvb.datatypes.equations.MixtureOfGammas method) (tvb.simulator.backend.ref.RefBase static method) EXCEPTION_DATATYPE_GROUP (tvb.core.entities.storage.root_dao.RootDAO attribute) EXCEPTION_DATATYPE_SIMULATION (tvb.core.entities.storage.root_dao.RootDAO attribute) execute() (tvb.core.services.backend_client_factory.BackendClientFactory static method) (tvb.core.services.backend_clients.backend_client.BackendClient static method) (tvb.core.services.backend_clients.cluster_scheduler_client.ClusterSchedulerClient static method) (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient static method) (tvb.core.services.backend_clients.standalone_client.StandAloneClient static method) execute_post() (tvb.interfaces.web.controllers.flow_controller.FlowController method) expire_session() (in module tvb.interfaces.web.controllers.common) export() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) (tvb.adapters.exporters.tvb_linked_export.TVBLinkedExporter method) (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) export_data() (tvb.adapters.exporters.export_manager.ExportManager method) export_datatype_from_rest_server() (tvb.storage.storage_interface.StorageInterface method) export_datatypes() (tvb.storage.storage_interface.StorageInterface method) export_datatypes_structure() (tvb.storage.storage_interface.StorageInterface method) EXPORT_FOLDER (tvb.storage.storage_interface.StorageInterface attribute) EXPORT_FOLDER_NAME (tvb.storage.storage_interface.StorageInterface attribute) export_project() (tvb.adapters.exporters.export_manager.ExportManager method) (tvb.storage.storage_interface.StorageInterface method) export_simulator_configuration() (tvb.adapters.exporters.export_manager.ExportManager method) (tvb.storage.storage_interface.StorageInterface method) Exportable (class in tvb.core.entities.exportable) EXPORTED_SIMULATION_DTS_DIR (tvb.storage.storage_interface.StorageInterface attribute) EXPORTED_SIMULATION_NAME (tvb.storage.storage_interface.StorageInterface attribute) ExportException ExportManager (class in tvb.adapters.exporters.export_manager) expose_endpoint() (in module tvb.interfaces.web.controllers.decorators) expose_fragment() (in module tvb.interfaces.web.controllers.decorators) expose_json() (in module tvb.interfaces.web.controllers.decorators) expose_numpy_array() (in module tvb.interfaces.web.controllers.decorators) expose_page() (in module tvb.interfaces.web.controllers.decorators) extended_result_size() (tvb.analyzers.fmri_balloon.BalloonModel method) extract_data() (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) extract_encrypted_password_from_list() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) extract_file_from_request() (tvb.interfaces.rest.server.resources.rest_resource.RestResource static method) extract_file_names() (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) extract_operation_data() (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCTimeseriesMetricsAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) extract_page_number() (tvb.interfaces.rest.server.resources.rest_resource.RestResource method) extract_source_labels() (tvb.adapters.visualizers.matrix_viewer.ABCMappedArraySVGVisualizer method)

F

f (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) f_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) FACE_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) FaceSurface (class in tvb.datatypes.surfaces) FAILED (tvb.core.services.backend_clients.hpc_scheduler_client.HPCJobStatus attribute) familiarize_TVB() (tvb.rateML.XML2model.RateML method) fastica() (in module tvb.analyzers.ica_algorithm) fc (tvb.adapters.creators.siibra_creator.SiibraModel attribute) FC_DATASET_NAME (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter attribute) FC_MAT_FILE (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter attribute) Fcd (class in tvb.datatypes.fcd) FCDAdapterForm (class in tvb.adapters.analyzers.fcd_adapter) FCDAdapterModel (class in tvb.adapters.analyzers.fcd_adapter) FcdH5 (class in tvb.adapters.datatypes.h5.fcd_h5) FcdIndex (class in tvb.adapters.datatypes.db.fcd) FFTAdapterForm (class in tvb.adapters.analyzers.fourier_adapter) FFTAdapterModel (class in tvb.adapters.analyzers.fourier_adapter) Field (class in tvb.core.neotraits.forms) fields (tvb.core.neotraits.forms.Form property) (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.KeycloakLoginForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) FIFTY (tvb.adapters.creators.allen_creator.ResolutionOptionsEnum attribute) FigureController (class in tvb.interfaces.web.controllers.project.figure_controller) FigureService (class in tvb.core.services.figure_service) FILE_EXTENSION (tvb.storage.h5.file.xml_metadata_handlers.XMLWriter attribute) file_format (tvb.core.entities.model.model_operation.ResultFigure attribute) file_helper (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) file_name_base() (tvb.core.neotraits._h5core.H5File class method) (tvb.core.neotraits.h5.H5File class method) FILE_NAME_STRUCTURE (tvb.storage.storage_interface.StorageInterface attribute) file_path (tvb.core.entities.model.model_operation.ResultFigure attribute) file_type (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporterModel attribute) FileMigrationException FileReader (class in tvb.basic.readers) files_build_data_check() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) FilesHelper (class in tvb.storage.h5.file.files_helper) FileStorageException FileStructureException FilesUpdateManager (class in tvb.core.entities.file.files_update_manager) FileVersioningException fill_adapter_form() (tvb.core.services.algorithm_service.AlgorithmService method) fill_default_attributes() (tvb.interfaces.web.controllers.base_controller.BaseController method) (tvb.interfaces.web.controllers.burst.base_controller.BurstBaseController method) (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) (tvb.interfaces.web.controllers.flow_controller.FlowController method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) (tvb.interfaces.web.controllers.users_controller.UserController method) fill_from() (tvb.core.entities.generic_attributes.GenericAttributes method) fill_from_datatype() (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails method) fill_from_default() (tvb.core.entities.transient.range_parameter.RangeParameter method) fill_from_generic_attributes() (tvb.core.entities.model.model_datatype.DataType method) fill_from_h5() (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex method) (tvb.core.entities.model.model_datatype.DataType method) fill_from_has_traits() (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex method) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex method) (tvb.adapters.datatypes.db.fcd.FcdIndex method) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex method) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex method) (tvb.adapters.datatypes.db.graph.CovarianceIndex method) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex method) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex method) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex method) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex method) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex method) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex method) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex method) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex method) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex method) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex method) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex method) (tvb.adapters.datatypes.db.sensors.SensorsIndex method) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex method) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex method) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex method) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex method) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex method) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex method) (tvb.adapters.datatypes.db.surface.SurfaceIndex method) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex method) (tvb.adapters.datatypes.db.tracts.TractsIndex method) (tvb.adapters.datatypes.db.volume.VolumeIndex method) (tvb.core.entities.model.model_datatype.DataType method) (tvb.core.entities.model.model_datatype.DataTypeMatrix method) fill_from_post() (tvb.adapters.forms.equation_forms.EquationForm method) (tvb.adapters.forms.equation_plot_forms.EquationPlotForm method) (tvb.adapters.forms.monitor_forms.MonitorForm method) (tvb.adapters.forms.simulator_fragments.SimulatorFinalFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment static method) (tvb.core.neotraits.forms.Field method) (tvb.core.neotraits.forms.Form method) (tvb.core.neotraits.forms.FormField method) fill_from_post_plus_defaults() (tvb.core.adapters.abcadapter.ABCAdapterForm method) fill_from_single_post_param() (tvb.core.neotraits.forms.Form method) fill_from_trait() (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm method) (tvb.adapters.forms.equation_forms.EquationForm method) (tvb.adapters.forms.integrator_forms.IntegratorForm method) (tvb.adapters.forms.integrator_forms.IntegratorStochasticForm method) (tvb.adapters.forms.model_forms.ModelForm method) (tvb.adapters.forms.monitor_forms.BoldMonitorForm method) (tvb.adapters.forms.monitor_forms.MonitorForm method) (tvb.adapters.forms.monitor_forms.SpatialAverageMonitorForm method) (tvb.adapters.forms.noise_forms.MultiplicativeNoiseForm method) (tvb.adapters.forms.simulator_fragments.SimulatorIntegratorFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorModelFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorMonitorFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorStimulusFragment method) (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapterForm method) (tvb.core.neotraits.forms.Form method) fill_index_from_h5() (tvb.core.adapters.abcadapter.ABCAdapter static method) fill_into() (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory method) fill_operationgroup_name() (tvb.core.entities.model.model_operation.OperationGroup method) fill_overlay_attributes() (tvb.interfaces.web.controllers.base_controller.BaseController method) fill_pse_context() (tvb.adapters.visualizers.pse.PSEDiscreteGroupModel method) fill_selectfield_with_datatypes() (tvb.core.services.algorithm_service.AlgorithmService method) fill_shape() (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex method) fill_trait() (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapterForm method) (tvb.adapters.forms.equation_forms.EquationForm method) (tvb.adapters.forms.integrator_forms.IntegratorStochasticForm method) (tvb.adapters.forms.monitor_forms.BoldMonitorForm method) (tvb.adapters.forms.monitor_forms.MonitorForm method) (tvb.adapters.forms.noise_forms.MultiplicativeNoiseForm method) (tvb.adapters.forms.simulator_fragments.SimulatorIntegratorFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorModelFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorStimulusFragment method) (tvb.adapters.forms.simulator_fragments.SimulatorSurfaceFragment method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapterForm method) (tvb.core.neotraits.forms.Form method) fill_trait_partially() (tvb.adapters.forms.equation_forms.EquationForm method) (tvb.core.neotraits.forms.Form method) filter_category() (tvb.core.entities.storage.operation_dao.OperationDAO method) FilterChain (class in tvb.core.entities.filters.chain) Final (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) (class in tvb.simulator.descriptors) Final.State (class in tvb.simulator.descriptors) find_file_by_gid() (tvb.core.neocom._h5loader.DirLoader method) find_file_for_has_traits_type() (tvb.core.neocom._h5loader.DirLoader method) find_project() (tvb.core.services.project_service.ProjectService method) find_project_lazy_by_gid() (tvb.core.services.project_service.ProjectService method) finish_time (tvb.core.entities.model.model_burst.BurstConfiguration attribute) FiniteSupportEquation (class in tvb.datatypes.equations) fire_operation() (in module tvb.interfaces.command.lab) (tvb.core.services.operation_service.OperationService method) FIRE_SIMULATION (tvb.interfaces.rest.commons.strings.RestLink attribute) fire_simulation() (in module tvb.interfaces.command.lab) (tvb.interfaces.rest.client.tvb_client.TVBClient method) FIRST_FORM_URL (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules attribute) first_monitor (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel property) FIRST_RUN_STORAGE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) FirstOrderVolterra (class in tvb.datatypes.equations) FirstOrderVolterraEquationForm (class in tvb.adapters.forms.equation_forms) fits_max_operation_size() (tvb.core.services.operation_service.OperationService method) fixed_generic_attributes (tvb.core.entities.model.model_datatype.DataType attribute) fk_admin (tvb.core.entities.model.model_project.Project attribute) fk_brain_skull_gid (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) fk_category (tvb.core.entities.model.model_operation.Algorithm attribute) fk_connectivity_gid (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) fk_datatype_gid (tvb.core.entities.model.model_datatype.MeasurePointsSelection attribute) (tvb.core.entities.model.model_datatype.StoredPSEFilter attribute) fk_datatype_group (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute)

fk_for_user (tvb.core.entities.model.model_operation.ResultFigure attribute) fk_from_algo (tvb.core.entities.model.model_operation.Operation attribute) fk_from_datatype (tvb.core.entities.model.model_datatype.Links attribute) fk_from_operation (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.model.model_operation.OperationProcessIdentifier attribute) fk_in_project (tvb.core.entities.model.model_datatype.MeasurePointsSelection attribute) (tvb.core.entities.model.model_operation.ResultFigure attribute) fk_launched_by (tvb.core.entities.model.model_operation.Operation attribute) fk_launched_in (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) fk_metric_operation_group (tvb.core.entities.model.model_burst.BurstConfiguration attribute) fk_operation_group (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_operation.Operation attribute) fk_parent_burst (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) fk_project (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_project.User_to_Project attribute) fk_region_mapping_gid (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) fk_region_mapping_volume_gid (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) fk_region_volume_map_gid (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) fk_sensors_gid (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) fk_simulation (tvb.core.entities.model.model_burst.BurstConfiguration attribute) fk_skin_air_gid (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) fk_skull_skin_gid (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) fk_source_gid (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) fk_surface_gid (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) fk_to_project (tvb.core.entities.model.model_datatype.Links attribute) fk_user (tvb.core.entities.model.model_burst.Dynamic attribute) (tvb.core.entities.model.model_project.User_to_Project attribute) (tvb.core.entities.model.model_project.UserPreferences attribute) fk_volume_gid (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) Float (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) FloatField (class in tvb.core.neotraits.forms) FLOW (tvb.core.adapters.abcdisplayer.URLGenerator attribute) FlowCoefficients (class in tvb.adapters.analyzers.bct_centrality_adapters) FlowController (class in tvb.interfaces.web.controllers.flow_controller) flush_buffered_data() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager.H5pyStorageBuffer method) focal_points_surface (tvb.datatypes.patterns.StimuliSurface property) focal_points_triangles (tvb.datatypes.patterns.StimuliSurface attribute) focal_points_volume (tvb.datatypes.patterns.SpatialPatternVolume attribute) FoldersQueueConsumer (class in tvb.storage.h5.encryption.data_encryption_handler) FooDataImporter (class in tvb.interfaces.command.demos.importers.new_importer) FooDataImporterForm (class in tvb.interfaces.command.demos.importers.new_importer) FooDataImporterModel (class in tvb.interfaces.command.demos.importers.new_importer) Form (class in tvb.core.neotraits.forms) format_bytes_human() (in module tvb.core.utils) format_timedelta() (in module tvb.core.utils) FormField (class in tvb.core.neotraits.forms) FormKeyInput (class in tvb.interfaces.rest.commons.strings) FormWithRanges (class in tvb.adapters.forms.form_with_ranges) FourierAdapter (class in tvb.adapters.analyzers.fourier_adapter) FourierSpectrum (class in tvb.datatypes.spectral) FourierSpectrumDisplay (class in tvb.adapters.visualizers.fourier_spectrum) FourierSpectrumForm (class in tvb.adapters.visualizers.fourier_spectrum) FourierSpectrumH5 (class in tvb.adapters.datatypes.h5.spectral_h5) FourierSpectrumIndex (class in tvb.adapters.datatypes.db.spectral) FourierSpectrumModel (class in tvb.adapters.visualizers.fourier_spectrum) fractions (tvb.datatypes.mode_decompositions.PrincipalComponents attribute) freq_step (tvb.datatypes.spectral.ComplexCoherenceSpectrum property) (tvb.datatypes.spectral.FourierSpectrum property) frequencies (tvb.adapters.analyzers.wavelet_adapter.WaveletAdapterModel attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) frequencies_max (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) frequencies_min (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) frequency (tvb.datatypes.spectral.CoherenceSpectrum attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum property) (tvb.datatypes.spectral.FourierSpectrum property) (tvb.datatypes.spectral.WaveletCoefficients property) frequency_step (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) from_array() (tvb.core.neotraits._h5accessors.DataSetMetaData class method) (tvb.core.neotraits._h5accessors.SparseMatrixMetaData class method) from_bytes_stream() (tvb.datatypes.connectivity.Connectivity class method) (tvb.datatypes.sensors.Sensors class method) (tvb.datatypes.surfaces.Surface class method) (tvb.datatypes.time_series.TimeSeries class method) from_dict() (tvb.core.entities.exportable.Exportable method) (tvb.core.entities.model.model_operation.Operation method) (tvb.core.entities.model.model_operation.ResultFigure method) (tvb.core.entities.model.model_project.Project method) (tvb.core.neotraits._h5accessors.DataSetMetaData class method) (tvb.core.neotraits._h5accessors.SparseMatrixMetaData class method) from_file() (tvb.core.neotraits._h5core.H5File static method) (tvb.core.neotraits.h5.H5File static method) (tvb.datatypes.connectivity.Connectivity class method) (tvb.datatypes.cortex.Cortex class method) (tvb.datatypes.local_connectivity.LocalConnectivity static method) (tvb.datatypes.projections.ProjectionMatrix class method) (tvb.datatypes.projections.ProjectionSurfaceEEG class method) (tvb.datatypes.projections.ProjectionSurfaceMEG class method) (tvb.datatypes.projections.ProjectionSurfaceSEEG class method) (tvb.datatypes.region_mapping.RegionMapping static method) (tvb.datatypes.sensors.Sensors class method) (tvb.datatypes.sensors.SensorsInternal class method) (tvb.datatypes.sensors.SensorsMEG class method) (tvb.datatypes.surfaces.BrainSkull class method) (tvb.datatypes.surfaces.EEGCap class method) (tvb.datatypes.surfaces.FaceSurface class method) (tvb.datatypes.surfaces.SkinAir class method) (tvb.datatypes.surfaces.SkullSkin class method) (tvb.datatypes.surfaces.Surface class method) (tvb.simulator.monitors.EEG class method) (tvb.simulator.monitors.iEEG class method) (tvb.simulator.monitors.MEG class method) (tvb.simulator.monitors.Projection class method) from_json() (tvb.core.entities.filters.chain.FilterChain class method) (tvb.core.entities.transient.range_parameter.RangeParameter static method) from_ndarray() (in module tvb.core.neotraits.db) from_simulator() (tvb.simulator.history.BaseHistory class method) from_trait() (tvb.core.neotraits.forms.TraitDataTypeSelectField method) (tvb.core.neotraits.forms.TraitField method) FULL_VIEW (tvb.core.entities.filters.factory.StaticFiltersFactory attribute) function_sensors_to_surface() (in module tvb.adapters.visualizers.sensors) FUNCTIONAL_CONNECTIVITY (tvb.adapters.creators.siibra_base.Component2Modality attribute) FunctionalConnectivityDynamicsAdapter (class in tvb.adapters.analyzers.fcd_adapter)

G

g (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) G (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.coupling.PreSigmoidal attribute) g (tvb.simulator.models.oscillator.Generic2dOscillator attribute) gain (tvb.simulator.monitors.Projection property) Gamma (class in tvb.datatypes.equations) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) gamma (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.linear.Linear attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) gamma_1 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_1T (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_2 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_2T (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_3 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_3T (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_4 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_5 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) gamma_E (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) gamma_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) Gamma_KERNEL (tvb.adapters.forms.equation_forms.BoldMonitorEquationsEnum attribute) GammaEquationForm (class in tvb.adapters.forms.equation_forms) GAST_SCHMIDT_KNOSCHE_SD (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) GAST_SCHMIDT_KNOSCHE_SF (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) GastSchmidtKnoscheSDModelForm (class in tvb.adapters.forms.model_forms) GastSchmidtKnoscheSFModelForm (class in tvb.adapters.forms.model_forms) gather_all_references_by_index() (in module tvb.core.neocom.h5) gather_datatypes_for_copy() (tvb.adapters.exporters.tvb_linked_export.TVBLinkedExporter method) gather_datatypes_references() (tvb.core.neotraits._h5core.ViewModelH5 method) gather_params_dict() (tvb.adapters.visualizers.histogram.HistogramViewer static method) gather_reference_files() (tvb.core.neocom._h5loader.ViewModelLoader method) gather_references() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) gather_references_of_view_model() (in module tvb.core.neocom.h5) Gaussian (class in tvb.datatypes.equations) GAUSSIAN (tvb.adapters.forms.equation_forms.SpatialEquationsEnum attribute) (tvb.adapters.forms.equation_forms.SurfaceModelEquationsEnum attribute) (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelEquationsEnum attribute) GaussianEquationForm (class in tvb.adapters.forms.equation_forms) gCa (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) GeneralizedSigmoid (class in tvb.datatypes.equations) GENERALIZEDSIGMOID (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) GeneralizedSigmoidEquationForm (class in tvb.adapters.forms.equation_forms) generate() (tvb.simulator.noise.Noise method), [1] generate_call_out_control() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) generate_guid() (in module tvb.core.utils) generate_public_private_key_pair() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) generate_random_password() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler static method) generate_region_boundaries() (tvb.adapters.visualizers.surface_view.ABCSurfaceDisplayer method) generate_surrogate_connectivity() (tvb.datatypes.connectivity.Connectivity method) Generic2dOscillator (class in tvb.simulator.models.oscillator) Generic2dOscillatorModelForm (class in tvb.adapters.forms.model_forms) GENERIC_2D_OSCILLATOR (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) GenericAttributes (class in tvb.core.entities.generic_attributes) geodesic_distance() (tvb.datatypes.surfaces.Surface method) geodesic_distance_matrix (tvb.datatypes.surfaces.Surface attribute) get_abs_path() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) get_activation_patterns() (tvb.adapters.datatypes.h5.annotation_h5.ConnectivityAnnotations method) get_adapter_fragments() (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) get_adapter_template() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_adapters_from_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_administrators() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) get_algorithm_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_algorithm_by_identifier() (tvb.core.services.algorithm_service.AlgorithmService static method) get_algorithm_by_module() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_algorithm_by_module_and_class() (tvb.core.services.algorithm_service.AlgorithmService static method) get_algorithm_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_all_algorithms() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_all_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_all_datatypes_from_data() (tvb.core.services.project_service.ProjectService static method) get_all_h5_paths() (tvb.core.entities.file.files_update_manager.FilesUpdateManager static method) get_all_metrics() (tvb.adapters.visualizers.pse.PSEGroupModel method) get_all_node_info() (tvb.adapters.visualizers.pse.PSEGroupModel method) (tvb.adapters.visualizers.pse_isocline.PSEIsoGroupModel method) get_all_operations_for_uploaders() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_all_projects() (tvb.core.entities.storage.project_dao.CaseDAO method) get_all_range_parameters() (tvb.adapters.simulator.range_parameters.RangeParametersCollector method) get_all_users() (tvb.core.entities.storage.project_dao.CaseDAO method) get_allen_mouse_cache_folder() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) get_analyze_groups() (tvb.core.services.algorithm_service.AlgorithmService static method) get_applicable_adapters() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_applied_transfer_functions() (tvb.interfaces.web.entities.context_transfer_vector.TransferVectorContext method) get_array_data() (tvb.adapters.datatypes.h5.graph_h5.ConnectivityMeasureH5 method) get_atlases_for_parcellation() (in module tvb.adapters.creators.siibra_base) get_attribute() (tvb.basic.config.stored.SettingsManager method) get_authorization_header() (tvb.storage.kube.kube_notifier.KubeNotifier static method) get_available_bursts() (tvb.core.services.burst_service.BurstService static method) get_available_metric_keys() (tvb.adapters.visualizers.pse.PSEGroupModel method) get_available_selections() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_base_datatype_for_h5file() (tvb.core.neocom._registry.Registry method) get_base_model_subclasses() (tvb.simulator.models.ModelsEnum static method) get_bids_dir() (in module tvb.interfaces.rest.bids_monitor.launch_bids_monitor) get_burst_by_id() (tvb.core.entities.storage.burst_dao.BurstDAO method) get_burst_for_direct_operation_id() (tvb.core.entities.storage.burst_dao.BurstDAO method) get_burst_for_operation_id() (tvb.core.entities.storage.burst_dao.BurstDAO method) (tvb.core.services.burst_service.BurstService static method) get_bursts_for_project() (tvb.core.entities.storage.burst_dao.BurstDAO method) get_cached_dynamic() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) get_cached_metadata() (tvb.core.neotraits._h5accessors.DataSet method) (tvb.core.neotraits.h5.DataSet method) get_category_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.algorithm_service.AlgorithmService static method) get_centres() (tvb.adapters.datatypes.h5.connectivity_h5.ConnectivityH5 method) get_class() (tvb.simulator.models.ModelsEnum method) get_class_by_name() (in module tvb.core.entities.load) get_class_path() (tvb.core.neocom._h5loader.ViewModelLoader method) (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) get_cohorts_for_sc() (in module tvb.adapters.creators.siibra_base) get_color_schemes_json() (tvb.interfaces.web.controllers.users_controller.UserController method) get_common_params() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) get_complete_paths() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) get_components_sizes() (in module tvb.analyzers.graph) get_configure_info() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_connected_dependencies_paths() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) get_connectivities_from_kg() (in module tvb.adapters.creators.siibra_base) get_connectivity() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) get_connectivity_matrix() (in module tvb.adapters.creators.siibra_base) get_connectivity_measures_from_kg() (in module tvb.adapters.creators.siibra_base) get_connectivity_parameters() (tvb.adapters.visualizers.connectivity.ConnectivityViewer static method) get_correlation_data() (tvb.adapters.datatypes.h5.graph_h5.CorrelationCoefficientsH5 method) get_coupling_to_form_dict() (in module tvb.adapters.forms.coupling_forms) get_current_and_next_monitor_form() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler static method) get_current_project() (in module tvb.interfaces.web.controllers.common) get_current_user() (in module tvb.interfaces.rest.server.request_helper) get_data() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) get_data_files() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) get_data_for_model_param() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_data_from_burst_configuration() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_data_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.interfaces.rest.client.tvb_client.TVBClient method) get_data_shape() (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex method) (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) get_data_uploader_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) GET_DATATYPE (tvb.interfaces.rest.commons.strings.RestLink attribute) get_datatype_by_gid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_by_id() (tvb.core.entities.storage.root_dao.RootDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatype_details() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_datatype_extra_info() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_for_h5file() (tvb.core.neocom._registry.Registry method) get_datatype_for_index() (tvb.core.neocom._registry.Registry method) get_datatype_group_by_gid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_group_disk_size() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_in_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatype_measure_group_from_ts_from_pse() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_operations() (tvb.interfaces.rest.server.facades.datatype_facade.DatatypeFacade method) get_datatypegroup_by_gid() (tvb.core.services.project_service.ProjectService static method) get_datatypegroup_by_op_group_id() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatypegroup_for_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatypes_for_range() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatypes_from_datatype_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatypes_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) (tvb.interfaces.rest.server.facades.project_facade.ProjectFacade method) get_default_message() (tvb.interfaces.rest.commons.exceptions.AuthorizationRequestException method) (tvb.interfaces.rest.commons.exceptions.BadRequestException method) (tvb.interfaces.rest.commons.exceptions.BaseRestException method) (tvb.interfaces.rest.commons.exceptions.ClientException method) (tvb.interfaces.rest.commons.exceptions.InvalidIdentifierException method) (tvb.interfaces.rest.commons.exceptions.InvalidInputException method) (tvb.interfaces.rest.commons.exceptions.ServiceException method) get_default_pse_viewer() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_default_selection() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) (tvb.datatypes.connectivity.Connectivity method) get_default_weights() (tvb.datatypes.patterns.StimuliRegion static method) get_disk_free_space() (tvb.core.services.settings_service.SettingsService static method) get_disk_size_for_operation() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_dt_h5_path() (tvb.interfaces.rest.server.facades.datatype_facade.DatatypeFacade method) get_dynamic() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_dynamic_by_name() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_dynamic_filters (tvb.core.neotraits.forms.TraitDataTypeSelectField property) get_dynamics_for_user() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_encrypted_dir() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler method) get_encryption_handler() (tvb.storage.storage_interface.StorageInterface static method) get_enum_members() (tvb.basic.neotraits._core.SubformEnum class method) get_equation_chart() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_equation_for_parameter() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_equation_information() (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorModel static method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorModel static method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorModel static method) (tvb.core.neotraits.spatial_model.SpatialModel static method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters static method) (tvb.interfaces.web.entities.context_transfer_vector.TransferVectorContext static method) get_equation_to_form_dict() (in module tvb.adapters.forms.equation_forms) get_errors_dict() (tvb.core.neotraits.forms.Form method) get_execution_time_approximation() (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) get_export_file_extension() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) (tvb.adapters.exporters.tvb_linked_export.TVBLinkedExporter method) get_export_file_name() (tvb.adapters.exporters.abcexporter.ABCExporter static method) get_exporters_for_data() (tvb.adapters.exporters.export_manager.ExportManager method) get_external_db_user() (tvb.core.services.user_service.UserService method) get_extra_algorithm_filters() (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterForm static method) get_extra_info() (tvb.adapters.datatypes.db.fcd.FcdIndex method) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex method) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex method) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex method) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex method) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex method) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex method) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex method) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex method) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex method) (tvb.core.entities.model.model_datatype.DataType method) (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.rest.server.facades.datatype_facade.DatatypeFacade static method) get_figure_count() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_file_data_version() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) get_filename() (tvb.storage.storage_interface.StorageInterface method) get_filenames_in_zip() (tvb.storage.storage_interface.StorageInterface method) get_filterable_meta() (tvb.core.entities.transient.structure_entities.DataTypeMetaData class method) (tvb.core.services.project_service.ProjectService static method) get_filtered_datatypes() (in module tvb.core.entities.load) (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_filtered_operations() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_filters() (tvb.adapters.analyzers.bct_adapters.BaseBCTForm static method) (tvb.adapters.analyzers.bct_adapters.BaseUnidirectedBCTForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapterForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterForm static method) (tvb.adapters.analyzers.fcd_adapter.FCDAdapterForm static method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterForm static method) (tvb.adapters.analyzers.fourier_adapter.FFTAdapterForm static method) (tvb.adapters.analyzers.ica_adapter.ICAAdapterForm static method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterForm static method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceForm static method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceForm static method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapterForm static method) (tvb.adapters.analyzers.pca_adapter.PCAAdapterForm static method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapterForm static method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilderForm static method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivitySelectorForm static method) (tvb.adapters.creators.siibra_creator.SiibraCreatorForm static method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm static method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm static method) (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm static method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapterForm static method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewForm static method) (tvb.adapters.visualizers.brain.BrainViewerForm static method) (tvb.adapters.visualizers.brain.DualBrainViewerForm static method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplayForm static method) (tvb.adapters.visualizers.connectivity.ConnectivityViewerForm static method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundleForm static method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizerForm static method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizerForm static method) (tvb.adapters.visualizers.eeg_monitor.EegMonitorForm static method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumForm static method) (tvb.adapters.visualizers.histogram.HistogramViewerForm static method) (tvb.adapters.visualizers.ica.ICAForm static method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewerForm static method) (tvb.adapters.visualizers.matrix_viewer.MatrixVisualizerForm static method) (tvb.adapters.visualizers.pca.PCAForm static method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizerForm static method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapterForm static method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapterForm static method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiserForm static method) (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerForm static method) (tvb.adapters.visualizers.sensors.SensorsViewerForm static method) (tvb.adapters.visualizers.surface_view.BaseSurfaceViewerForm static method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewerForm static method) (tvb.adapters.visualizers.time_series.TimeSeriesForm static method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiserForm static method) (tvb.adapters.visualizers.topographic.TopographicViewerForm static method) (tvb.adapters.visualizers.tract.TractViewerForm static method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizerForm static method) (tvb.core.adapters.abcadapter.ABCAdapterForm static method) (tvb.core.adapters.abcuploader.ABCUploaderForm static method) get_filters_for_type() (tvb.core.entities.filters.chain.FilterChain class method) get_first_monitor_fragment_url() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_focal_points() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_focal_points_for_parameter() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_form() (tvb.core.adapters.abcadapter.ABCAdapter method) get_form_class() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.bct_adapters.BaseUndirected method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.siibra_creator.SiibraCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.bids_importer.BIDSImporter method) (tvb.adapters.uploaders.brco_importer.BRCOImporter method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_eeg_importer.EEGRegionTimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporter method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporter method) (tvb.adapters.uploaders.sensors_importer.SensorsImporter method) (tvb.adapters.uploaders.tract_importer.ZipTxtTractsImporter method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter method) (tvb.adapters.uploaders.tvb_importer.TVBImporter method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizer method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizer method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.ica.ICA method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method) (tvb.adapters.visualizers.matrix_viewer.MappedArrayVisualizer method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method) (tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MappedArrayVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiser method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewer method) (tvb.adapters.visualizers.surface_view.RegionMappingViewer method) (tvb.adapters.visualizers.surface_view.SurfaceViewer method) (tvb.adapters.visualizers.time_series.TimeSeriesDisplay method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.tract.TractViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method) get_form_filters (tvb.core.neotraits.forms.TraitDataTypeSelectField property) get_form_for_coupling() (in module tvb.adapters.forms.coupling_forms) get_form_for_equation() (in module tvb.adapters.forms.equation_forms) get_form_for_integrator() (in module tvb.adapters.forms.integrator_forms) get_form_for_model() (in module tvb.adapters.forms.model_forms) get_form_for_monitor() (in module tvb.adapters.forms.monitor_forms) get_form_for_noise() (in module tvb.adapters.forms.noise_forms) get_fourier_data() (tvb.adapters.datatypes.h5.spectral_h5.FourierSpectrumH5 method) get_fragment_after_monitors() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler static method) get_from_session() (in module tvb.interfaces.web.controllers.common) get_functional_connectivity_matrix() (in module tvb.adapters.creators.siibra_base) get_generic_entity() (tvb.core.entities.storage.root_dao.RootDAO method) (tvb.core.services.algorithm_service.AlgorithmService static method) get_group_description() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_group_name() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_grouped_space_labels() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) (tvb.adapters.visualizers.time_series.ABCSpaceDisplayer method) (tvb.datatypes.connectivity.Connectivity method) get_h5file_for_datatype() (tvb.core.neocom._registry.Registry method) get_h5file_for_index() (tvb.core.neocom._registry.Registry method) get_help_url() (tvb.interfaces.web.controllers.help.help_config.HelpConfig method) get_hemispheres_for_regions() (in module tvb.adapters.creators.siibra_base) get_history_status() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_host_current_host_ip() (in module tvb.core.services.backend_clients.standalone_client) get_images_folder() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) get_import_export_encryption_handler() (tvb.storage.storage_interface.StorageInterface static method) get_index_for_datatype() (tvb.core.neocom._registry.Registry method) get_index_for_h5file() (tvb.core.neocom._registry.Registry method) get_input_name() (tvb.adapters.analyzers.bct_adapters.BaseBCTForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapterForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterForm static method) (tvb.adapters.analyzers.fcd_adapter.FCDAdapterForm static method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterForm static method) (tvb.adapters.analyzers.fourier_adapter.FFTAdapterForm static method) (tvb.adapters.analyzers.ica_adapter.ICAAdapterForm static method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterForm static method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceForm static method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceForm static method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapterForm static method) (tvb.adapters.analyzers.pca_adapter.PCAAdapterForm static method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapterForm static method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilderForm static method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivitySelectorForm static method) (tvb.adapters.creators.siibra_creator.SiibraCreatorForm static method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm static method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm static method) (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm static method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapterForm static method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewForm static method) (tvb.adapters.visualizers.brain.BrainViewerForm static method) (tvb.adapters.visualizers.brain.DualBrainViewerForm static method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplayForm static method) (tvb.adapters.visualizers.connectivity.ConnectivityViewerForm static method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundleForm static method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizerForm static method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizerForm static method) (tvb.adapters.visualizers.eeg_monitor.EegMonitorForm static method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumForm static method) (tvb.adapters.visualizers.histogram.HistogramViewerForm static method) (tvb.adapters.visualizers.ica.ICAForm static method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewerForm static method) (tvb.adapters.visualizers.matrix_viewer.MatrixVisualizerForm static method) (tvb.adapters.visualizers.pca.PCAForm static method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizerForm static method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapterForm static method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapterForm static method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiserForm static method) (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerForm static method) (tvb.adapters.visualizers.sensors.SensorsViewerForm static method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewerForm static method) (tvb.adapters.visualizers.surface_view.RegionMappingViewerForm static method) (tvb.adapters.visualizers.surface_view.SurfaceViewerForm static method) (tvb.adapters.visualizers.time_series.TimeSeriesForm static method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiserForm static method) (tvb.adapters.visualizers.topographic.TopographicViewerForm static method) (tvb.adapters.visualizers.tract.TractViewerForm static method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizerForm static method) (tvb.core.adapters.abcadapter.ABCAdapterForm static method) (tvb.core.adapters.abcuploader.ABCUploaderForm static method) get_integrator_name_list() (in module tvb.adapters.forms.integrator_forms) get_integrator_to_form_dict() (in module tvb.adapters.forms.integrator_forms) get_keycloak_instance() (tvb.core.services.authorization.AuthorizationManager static method) get_known_subclasses() (tvb.basic.neotraits._declarative_base.MetaType method) get_label() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) (tvb.adapters.exporters.tvb_linked_export.TVBLinkedExporter method) get_labels() (tvb.adapters.datatypes.h5.sensors_h5.SensorsH5 method) get_labels_for_dimension() (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex method) get_last_data_with_uid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_last_fragment_url() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_launchable_algorithms() (tvb.core.services.algorithm_service.AlgorithmService method) get_launchable_algorithms_for_datatype() (tvb.core.services.algorithm_service.AlgorithmService method) get_launchable_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_library_folder() (tvb.basic.config.environment.Environment method) get_line_starts() (tvb.adapters.datatypes.h5.tracts_h5.TractsH5 method) get_lines_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_link() (tvb.core.entities.storage.project_dao.CaseDAO method) get_linkable_projects() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_linkable_projects_for_user() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.project_service.ProjectService static method) get_linked_datatypes_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_linked_datatypes_storage_path() (tvb.core.services.project_service.ProjectService method) get_links_for_datatype() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_links_to_project() (tvb.core.entities.storage.project_dao.CaseDAO method) get_locations() (tvb.adapters.datatypes.h5.sensors_h5.SensorsH5 method) get_logged_user() (in module tvb.interfaces.web.controllers.common) get_logger() (in module tvb.basic.logger.builder) get_max_burst_id() (tvb.core.entities.storage.burst_dao.BurstDAO method) get_measure_points_selection_gid() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesRegionH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesSensorsH5 method) get_members_of_project() (tvb.core.entities.storage.project_dao.CaseDAO method) get_message_from_session() (in module tvb.interfaces.web.controllers.common) get_metadata() (tvb.core.neotraits._h5accessors.SparseMatrix method) (tvb.core.neotraits.h5.SparseMatrix method) (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) get_metadata_param() (tvb.core.neotraits._h5core.H5File static method) (tvb.core.neotraits.h5.H5File static method) get_metric_matrix() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_min_max_values() (tvb.adapters.datatypes.h5.local_connectivity_h5.LocalConnectivityH5 method) (tvb.adapters.datatypes.h5.spectral_h5.DataTypeMatrixH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) get_model_to_form_dict() (in module tvb.adapters.forms.model_forms) get_monitor_to_form_dict() (in module tvb.adapters.forms.monitor_forms) get_monitor_to_ui_name_dict() (in module tvb.adapters.forms.monitor_forms) get_node_matrix() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_node_text() (tvb.storage.h5.file.xml_metadata_handlers.XMLReader static method) get_non_validated_entities() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_number_of_bursts() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_number_of_split_slices() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_one_dimensional_list() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) get_op_thread() (in module tvb.core.services.backend_clients.hpc_scheduler_client) get_operation_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operation_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operation_details() (tvb.core.services.project_service.ProjectService method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_operation_group_by_gid() (tvb.core.services.project_service.ProjectService static method) get_operation_group_by_id() (tvb.core.services.project_service.ProjectService static method) get_operation_lazy_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operation_numbers() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.algorithm_service.AlgorithmService static method) get_operation_process_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operation_results() (in module tvb.interfaces.command.lab) (tvb.interfaces.rest.client.tvb_client.TVBClient method) get_operation_status() (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.rest.server.facades.operation_facade.OperationFacade static method) get_operationgroup_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operationgroup_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operations() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operations_for_datatype() (tvb.interfaces.rest.client.tvb_client.TVBClient method) get_operations_for_hpc_job() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operations_in_group() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_operations_in_project() (tvb.interfaces.rest.client.tvb_client.TVBClient method) get_operations_results() (tvb.interfaces.rest.server.facades.operation_facade.OperationFacade static method) get_operations_with_error_in_project() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_output() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.siibra_creator.SiibraCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.bids_importer.BIDSImporter method) (tvb.adapters.uploaders.brco_importer.BRCOImporter method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporter method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporter method) (tvb.adapters.uploaders.sensors_importer.SensorsImporter method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter method) (tvb.adapters.uploaders.tvb_importer.TVBImporter method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.abcdisplayer.ABCDisplayer method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method)

get_params_configurable_in_phase_plane() (tvb.adapters.forms.form_with_ranges.FormWithRanges static method) (tvb.adapters.forms.model_forms.CoombesByrne2DModelForm method) (tvb.adapters.forms.model_forms.CoombesByrneModelForm method) (tvb.adapters.forms.model_forms.DumontGutkinModelForm method) (tvb.adapters.forms.model_forms.Epileptor2DModelForm method) (tvb.adapters.forms.model_forms.EpileptorCodim3ModelForm method) (tvb.adapters.forms.model_forms.EpileptorCodim3SlowModModelForm method) (tvb.adapters.forms.model_forms.EpileptorModelForm method) (tvb.adapters.forms.model_forms.EpileptorRestingStateModelForm method) (tvb.adapters.forms.model_forms.GastSchmidtKnoscheSDModelForm method) (tvb.adapters.forms.model_forms.GastSchmidtKnoscheSFModelForm method) (tvb.adapters.forms.model_forms.Generic2dOscillatorModelForm method) (tvb.adapters.forms.model_forms.HopfieldModelForm method) (tvb.adapters.forms.model_forms.JansenRitModelForm method) (tvb.adapters.forms.model_forms.KuramotoModelForm method) (tvb.adapters.forms.model_forms.LarterBreakspearModelForm method) (tvb.adapters.forms.model_forms.LinearModelForm method) (tvb.adapters.forms.model_forms.ModelForm static method) (tvb.adapters.forms.model_forms.MontbrioPazoRoxinModelForm method) (tvb.adapters.forms.model_forms.ReducedSetFitzHughNagumoModelForm method) (tvb.adapters.forms.model_forms.ReducedSetHindmarshRoseModelForm method) (tvb.adapters.forms.model_forms.ReducedWongWangExcInhModelForm method) (tvb.adapters.forms.model_forms.ReducedWongWangModelForm method) (tvb.adapters.forms.model_forms.SupHopfModelForm method) (tvb.adapters.forms.model_forms.WilsonCowanModelForm method) (tvb.adapters.forms.model_forms.ZerlautAdaptationFirstOrderModelForm method) (tvb.adapters.forms.model_forms.ZetterbergJansenModelForm method) get_parcellations_for_atlas() (in module tvb.adapters.creators.siibra_base) get_password_file() (tvb.storage.h5.encryption.encryption_handler.EncryptionHandler method) get_path_to_encrypt() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) get_pick_triangles_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_pick_vertex_normals_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_pick_vertices_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_preference() (tvb.core.entities.model.model_project.User method) get_previews() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_project_by_gid() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_by_id() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_by_name() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_disk_size() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_folder() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) get_project_folder_from_h5() (tvb.storage.h5.file.files_helper.FilesHelper static method) get_project_for_operation() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_lazy_by_gid() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_list() (tvb.interfaces.rest.client.tvb_client.TVBClient method) get_project_meta_file_path() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) get_project_operations() (tvb.interfaces.rest.server.facades.project_facade.ProjectFacade method) get_project_structure() (tvb.core.services.project_service.ProjectService method) get_project_structure_grouping() (tvb.core.entities.model.model_project.User method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_project_uploader_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_projects_folder() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface static method) get_projects_for_user() (tvb.core.entities.storage.project_dao.CaseDAO method) get_pse_filters() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_python_filter_equivalent() (tvb.core.entities.filters.chain.FilterChain method) get_range1_key() (tvb.adapters.visualizers.pse.PSEGroupModel method) get_range1_label() (tvb.adapters.visualizers.pse.PSEModel method) get_range2_key() (tvb.adapters.visualizers.pse.PSEGroupModel method) get_range2_label() (tvb.adapters.visualizers.pse.PSEModel method) get_range_param_by_name() (tvb.core.services.burst_service.BurstService static method) get_range_param_prefixes_dict() (tvb.adapters.forms.form_with_ranges.FormWithRanges static method) get_range_parameters() (tvb.adapters.forms.form_with_ranges.FormWithRanges method) (tvb.adapters.forms.noise_forms.AdditiveNoiseForm method) get_range_values() (tvb.core.entities.transient.range_parameter.RangeParameter method) get_raw_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.algorithm_service.AlgorithmService static method) get_region_labels() (tvb.adapters.datatypes.h5.connectivity_h5.ConnectivityH5 method) get_region_mapping_slice() (tvb.adapters.datatypes.h5.region_mapping_h5.RegionMappingH5 method) get_regions_positions() (in module tvb.adapters.creators.siibra_base) get_remover() (in module tvb.core.removers_factory) get_rendering_dict() (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivitySelectorForm method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm method) (tvb.adapters.creators.stimulus_creator.StimulusRegionSelectorForm method) (tvb.adapters.creators.stimulus_creator.StimulusSurfaceSelectorForm method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm method) get_required_datatype() (tvb.adapters.analyzers.bct_adapters.BaseBCTForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapterForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterForm static method) (tvb.adapters.analyzers.fcd_adapter.FCDAdapterForm static method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterForm static method) (tvb.adapters.analyzers.fourier_adapter.FFTAdapterForm static method) (tvb.adapters.analyzers.ica_adapter.ICAAdapterForm static method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterForm static method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceForm static method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceForm static method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapterForm static method) (tvb.adapters.analyzers.pca_adapter.PCAAdapterForm static method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapterForm static method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilderForm static method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivitySelectorForm static method) (tvb.adapters.creators.siibra_creator.SiibraCreatorForm static method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm static method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm static method) (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm static method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapterForm static method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewForm static method) (tvb.adapters.visualizers.brain.BrainViewerForm static method) (tvb.adapters.visualizers.brain.DualBrainViewerForm static method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplayForm static method) (tvb.adapters.visualizers.connectivity.ConnectivityViewerForm static method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundleForm static method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizerForm static method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizerForm static method) (tvb.adapters.visualizers.eeg_monitor.EegMonitorForm static method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumForm static method) (tvb.adapters.visualizers.histogram.HistogramViewerForm static method) (tvb.adapters.visualizers.ica.ICAForm static method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewerForm static method) (tvb.adapters.visualizers.matrix_viewer.MatrixVisualizerForm static method) (tvb.adapters.visualizers.pca.PCAForm static method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizerForm static method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapterForm static method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapterForm static method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiserForm static method) (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerForm static method) (tvb.adapters.visualizers.sensors.SensorsViewerForm static method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewerForm static method) (tvb.adapters.visualizers.surface_view.RegionMappingViewerForm static method) (tvb.adapters.visualizers.surface_view.SurfaceViewerForm static method) (tvb.adapters.visualizers.time_series.TimeSeriesForm static method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiserForm static method) (tvb.adapters.visualizers.topographic.TopographicViewerForm static method) (tvb.adapters.visualizers.tract.TractViewerForm static method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizerForm static method) (tvb.core.adapters.abcadapter.ABCAdapterForm static method) (tvb.core.adapters.abcuploader.ABCUploaderForm static method) get_required_disk_size() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.siibra_creator.SiibraCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.abcdisplayer.ABCDisplayer method) (tvb.core.adapters.abcuploader.ABCUploader method) get_required_memory_size() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.siibra_creator.SiibraCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method) (tvb.adapters.visualizers.matrix_viewer.ABCMappedArraySVGVisualizer method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.adapters.visualizers.surface_view.SurfaceViewer method) (tvb.adapters.visualizers.time_series.TimeSeriesDisplay method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.tract.TractViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.abcuploader.ABCUploader method) get_results_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_selections_for_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.algorithm_service.AlgorithmService static method) get_series_array_discrete() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_series_data() (tvb.datatypes.equations.Equation method) get_series_json() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController static method) get_simple_adapter_interface() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_simulation_state_index() (tvb.core.services.simulator_service.SimulatorService method) get_slice_vertex_boundaries() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_slices_to_hemisphere_mask() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_space_labels() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesSurfaceH5 method) (tvb.adapters.visualizers.time_series.ABCSpaceDisplayer method) get_spatial_equation_chart() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) get_spectrum_data() (tvb.adapters.datatypes.h5.spectral_h5.ComplexCoherenceSpectrumH5 method) get_sql_filter_equivalent() (tvb.core.entities.filters.chain.FilterChain method) get_state_variable() (tvb.datatypes.time_series.TimeSeries method) get_stimulus_chunk() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) get_storage_manager() (tvb.storage.storage_interface.StorageInterface static method) get_storage_path() (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) get_stored_pse_filters() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.algorithm_service.AlgorithmService static method) get_structural_connectivities_from_kg() (in module tvb.adapters.creators.siibra_base) get_subform_key() (tvb.adapters.forms.equation_forms.EquationForm static method) (tvb.adapters.forms.integrator_forms.IntegratorForm static method) (tvb.adapters.forms.noise_forms.NoiseForm static method) (tvb.core.neotraits.forms.Form static method) get_subspace_by_index() (tvb.datatypes.time_series.TimeSeries method) get_subspace_by_labels() (tvb.datatypes.time_series.TimeSeries method) get_subtype_attr() (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex method) (tvb.adapters.datatypes.db.sensors.SensorsIndex method) (tvb.adapters.datatypes.db.surface.SurfaceIndex method) (tvb.core.neotraits.db.HasTraitsIndex method) get_summary_for_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_supported_types() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) (tvb.adapters.exporters.tvb_linked_export.TVBLinkedExporter method) get_system_user() (tvb.core.entities.storage.project_dao.CaseDAO method) get_temp_folder() (tvb.storage.storage_interface.StorageInterface method) get_template_for_adapter() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_temporal_equation_chart() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) get_time_series_by_gid() (tvb.core.entities.storage.root_dao.RootDAO method) get_tract() (tvb.adapters.datatypes.h5.tracts_h5.TractsH5 method) get_traited_equation() (tvb.adapters.forms.equation_forms.AbsoluteEquationForm method) (tvb.adapters.forms.equation_forms.AlphaEquationForm method) (tvb.adapters.forms.equation_forms.CosineEquationForm method) (tvb.adapters.forms.equation_forms.DoubleExponentialEquationForm method) (tvb.adapters.forms.equation_forms.DoubleGaussianEquationForm method) (tvb.adapters.forms.equation_forms.EquationForm method) (tvb.adapters.forms.equation_forms.FirstOrderVolterraEquationForm method) (tvb.adapters.forms.equation_forms.GammaEquationForm method) (tvb.adapters.forms.equation_forms.GaussianEquationForm method) (tvb.adapters.forms.equation_forms.GeneralizedSigmoidEquationForm method) (tvb.adapters.forms.equation_forms.IdentityEquationForm method) (tvb.adapters.forms.equation_forms.LinearEquationForm method) (tvb.adapters.forms.equation_forms.LogarithmEquationForm method) (tvb.adapters.forms.equation_forms.MixtureOfGammasEquationForm method) (tvb.adapters.forms.equation_forms.PulseTrainEquationForm method) (tvb.adapters.forms.equation_forms.RescaleIntervalEquationForm method) (tvb.adapters.forms.equation_forms.SigmoidEquationForm method) (tvb.adapters.forms.equation_forms.SinusoidEquationForm method) get_triangles_mapping() (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) get_triangles_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_ui_description() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_ui_fields() (tvb.core.entities.transient.context_overlay.CommonDetails method) get_ui_message() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) get_ui_name() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_ui_name_to_monitor_dict() (in module tvb.adapters.forms.monitor_forms) get_ui_name_to_monitor_equation_dict() (in module tvb.adapters.forms.equation_forms) get_ui_subsection() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_unique_file_name() (in module tvb.core.utils) get_update_scripts() (tvb.core.code_versions.base_classes.UpdateManager method) get_upload_algorithms() (tvb.core.services.algorithm_service.AlgorithmService static method) get_upload_field_names() (tvb.core.adapters.abcuploader.ABCUploaderForm method) get_upload_information() (tvb.adapters.uploaders.bids_importer.BIDSImporterForm static method) (tvb.adapters.uploaders.brco_importer.BRCOImporterForm static method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporterForm static method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterForm static method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporterForm static method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporterForm static method) (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterForm static method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporterForm static method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporterForm static method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporterForm static method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixImporterForm static method) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporterForm static method) (tvb.adapters.uploaders.sensors_importer.SensorsImporterForm static method) (tvb.adapters.uploaders.tract_importer.TrackImporterForm static method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporterForm static method) (tvb.adapters.uploaders.tvb_importer.TVBImporterForm static method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporterForm static method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporterForm static method) (tvb.core.adapters.abcuploader.ABCUploader static method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporterForm static method) get_upload_overlay() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_uploader_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_url_adapter() (tvb.interfaces.web.controllers.base_controller.BaseController static method) get_url_after_monitor_equation() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_url_after_monitors() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_url_for_final_fragment() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController static method) get_url_for_region_boundaries() (tvb.adapters.visualizers.surface_view.SurfaceURLGenerator static method) get_urls_for_next_monitor_fragment() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) get_urls_for_pick_rendering() (tvb.adapters.visualizers.surface_view.SurfaceURLGenerator static method) get_urls_for_rendering() (tvb.adapters.visualizers.surface_view.SurfaceURLGenerator static method) get_user_by_email() (tvb.core.entities.storage.project_dao.CaseDAO method) get_user_by_gid() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) get_user_by_id() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) get_user_by_name() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) get_user_for_datatype() (tvb.core.entities.storage.project_dao.CaseDAO method) get_users() (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.rest.server.facades.user_facade.UserFacade static method) get_users_for_project() (tvb.core.services.user_service.UserService method) get_values_of_datatype() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_variables_of_interest_indexes() (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel static method) get_vertex_normals_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_vertices() (tvb.adapters.datatypes.h5.tracts_h5.TractsH5 method) get_vertices_slice() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) get_view_model() (tvb.adapters.analyzers.bct_adapters.BaseBCTForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapterForm static method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterForm static method) (tvb.adapters.analyzers.fcd_adapter.FCDAdapterForm static method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterForm static method) (tvb.adapters.analyzers.fourier_adapter.FFTAdapterForm static method) (tvb.adapters.analyzers.ica_adapter.ICAAdapterForm static method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterForm static method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceForm static method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceForm static method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapterForm static method) (tvb.adapters.analyzers.pca_adapter.PCAAdapterForm static method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapterForm static method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilderForm static method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorForm static method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm static method) (tvb.adapters.creators.siibra_creator.SiibraCreatorForm static method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm static method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm static method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapterForm static method) (tvb.adapters.uploaders.bids_importer.BIDSImporterForm static method) (tvb.adapters.uploaders.brco_importer.BRCOImporterForm static method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporterForm static method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterForm static method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporterForm static method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporterForm static method) (tvb.adapters.uploaders.mat_timeseries_eeg_importer.EEGRegionMatTimeSeriesImporterForm static method) (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterForm static method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporterForm static method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporterForm static method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporterForm static method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixImporterForm static method) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporterForm static method) (tvb.adapters.uploaders.sensors_importer.SensorsImporterForm static method) (tvb.adapters.uploaders.tract_importer.TrackImporterForm static method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporterForm static method) (tvb.adapters.uploaders.tvb_importer.TVBImporterForm static method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporterForm static method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporterForm static method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewForm static method) (tvb.adapters.visualizers.brain.BrainViewerForm static method) (tvb.adapters.visualizers.brain.DualBrainViewerForm static method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplayForm static method) (tvb.adapters.visualizers.connectivity.ConnectivityViewerForm static method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundleForm static method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizerForm static method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizerForm static method) (tvb.adapters.visualizers.eeg_monitor.EegMonitorForm static method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumForm static method) (tvb.adapters.visualizers.histogram.HistogramViewerForm static method) (tvb.adapters.visualizers.ica.ICAForm static method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewerForm static method) (tvb.adapters.visualizers.matrix_viewer.MatrixVisualizerForm static method) (tvb.adapters.visualizers.pca.PCAForm static method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizerForm static method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapterForm static method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapterForm static method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizerForm static method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiserForm static method) (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerForm static method) (tvb.adapters.visualizers.sensors.SensorsViewerForm static method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewerForm static method) (tvb.adapters.visualizers.surface_view.RegionMappingViewerForm static method) (tvb.adapters.visualizers.surface_view.SurfaceViewerForm static method) (tvb.adapters.visualizers.time_series.TimeSeriesForm static method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiserForm static method) (tvb.adapters.visualizers.topographic.TopographicViewerForm static method) (tvb.adapters.visualizers.tract.TractViewerForm static method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizerForm static method) (tvb.core.adapters.abcadapter.ABCAdapterForm static method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporterForm static method) get_view_model_class() (tvb.core.adapters.abcadapter.ABCAdapter method) get_view_model_from_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) get_view_region() (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) get_viewer_color_scheme() (tvb.interfaces.web.controllers.users_controller.UserController method) get_viewers_color_scheme() (tvb.core.entities.model.model_project.User method) get_visualisers_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_visualisers_category() (tvb.core.services.algorithm_service.AlgorithmService static method) get_visualizers_for_group() (tvb.core.services.algorithm_service.AlgorithmService method) get_volume_slice() (tvb.adapters.datatypes.h5.structural_h5.VolumetricDataMixin method) get_volume_view() (tvb.adapters.datatypes.h5.structural_h5.VolumetricDataMixin method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesVolumeH5 method) get_voxel_time_series() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesVolumeH5 method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) get_x_axis_range() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) getadapterinterface() (tvb.interfaces.web.controllers.flow_controller.FlowController method) getmemberspage() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) gfun() (tvb.simulator.noise.Additive method) (tvb.simulator.noise.Multiplicative method) (tvb.simulator.noise.Noise method) gid (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.basic.neotraits._core.HasTraits attribute) (tvb.basic.neotraits.api.HasTraits attribute) (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) (tvb.core.entities.model.model_project.Project attribute) (tvb.core.entities.model.model_project.User attribute) (tvb.core.entities.transient.structure_entities.DataTypeMetaData property) (tvb.core.neotraits.db.HasTraitsIndex attribute) (tvb.simulator.simulator.Simulator attribute) GID_FIELD (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) GIFTIParser (class in tvb.adapters.uploaders.gifti.parser) GIFTISurfaceImporter (class in tvb.adapters.uploaders.gifti_surface_importer) GIFTISurfaceImporterForm (class in tvb.adapters.uploaders.gifti_surface_importer) GIFTISurfaceImporterModel (class in tvb.adapters.uploaders.gifti_surface_importer) GIFTITimeSeriesImporter (class in tvb.adapters.uploaders.gifti_timeseries_importer) GIFTITimeSeriesImporterForm (class in tvb.adapters.uploaders.gifti_timeseries_importer) GIFTITimeSeriesImporterModel (class in tvb.adapters.uploaders.gifti_timeseries_importer) gK (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) gL (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) global_parameter_names (tvb.simulator.models.base.Model property) GlobalAverage (class in tvb.simulator.monitors) GlobalAverageViewModel (class in tvb.core.entities.file.simulator.view_model) globalT (tvb.simulator.coupling.PreSigmoidal attribute) gNa (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) good_history_shape (tvb.simulator.simulator.Simulator property) gpu_device_info() (tvb.rateML.run.model_driver.Driver_Setup method) (tvb.rateML.run.model_driver_bold.Driver_Setup method) (tvb.rateML.run.model_driver_zerlaut.Driver_Setup method) gpu_mem_info() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) graph_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) group (tvb.core.entities.transient.structure_entities.DataTypeMetaData property) group_description (tvb.core.entities.model.model_operation.Algorithm attribute) group_name (tvb.core.entities.model.model_operation.Algorithm attribute) group_noise_array_by_state_var() (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController static method) group_operation_launch() (tvb.core.services.operation_service.OperationService method) group_parameter_values_by_name() (tvb.core.services.burst_config_serialization.SerializationManager static method) group_sensors_to_electrodes() (tvb.datatypes.sensors.SensorsInternal static method) grouped_electrodes (tvb.datatypes.sensors.SensorsInternal property)

H

H (tvb.simulator.coupling.PreSigmoidal attribute) h5_class_from_file() (tvb.core.neotraits._h5core.H5File static method) (tvb.core.neotraits.h5.H5File static method) H5_FILE (tvb.core.adapters.abcdisplayer.URLGenerator attribute) h5_file_for_gid() (in module tvb.core.neocom.h5) h5_file_for_index() (in module tvb.core.neocom.h5) H5File (class in tvb.core.neotraits._h5core) (class in tvb.core.neotraits.h5) H5Reader (class in tvb.basic.readers) h_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) HAMMING (tvb.datatypes.spectral.WindowingFunctionsEnum attribute) handle_error() (in module tvb.interfaces.web.controllers.decorators) (tvb.interfaces.rest.server.rest_api.RestApi method) handle_file_added() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) handle_hpc_status_changed() (tvb.core.services.hpc_operation_service.HPCOperationService static method) handle_infinite_values() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) handle_next_fragment_for_monitors() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler method) handle_range_params_at_loading() (tvb.core.services.burst_service.BurstService static method) handle_response() (in module tvb.interfaces.rest.client.client_decorators) HANNING (tvb.datatypes.spectral.WindowingFunctionsEnum attribute) has_access() (tvb.interfaces.rest.server.access_permissions.permissions.ResourceAccessPermission method) has_children (tvb.core.entities.transient.structure_entities.StructureNode property) has_cortical_mask (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) has_error_message() (in module tvb.interfaces.web.controllers.common) has_file_like() (tvb.basic.readers.ZipReader method) has_finished (tvb.core.entities.model.model_operation.Operation property) has_finished() (in module tvb.core.entities.model.model_operation) has_hemispheres_mask (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) has_nan (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) has_nonint_vars (tvb.simulator.models.base.Model property) has_orientation (tvb.datatypes.sensors.Sensors attribute) (tvb.datatypes.sensors.SensorsEEG attribute) (tvb.datatypes.sensors.SensorsMEG attribute) has_surface_mapping (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) has_valid_time_series (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) has_volume_mapping (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute)

hash_password() (in module tvb.core.utils) HasTraits (class in tvb.basic.neotraits._core) (class in tvb.basic.neotraits.api) HasTraitsIndex (class in tvb.core.neotraits.db), [1] HDF5StorageManager (class in tvb.storage.h5.file.hdf5_storage_manager) HDF5StorageManager.H5pyStorageBuffer (class in tvb.storage.h5.file.hdf5_storage_manager) He (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) heaviside() (tvb.simulator.backend.ref.RefBase static method) Heke (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) HELP_PAGE_PATH (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) HelpConfig (class in tvb.interfaces.web.controllers.help.help_config) HelpController (class in tvb.interfaces.web.controllers.help.help_controller) HEMISPHERE_INFO (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) hemisphere_mask (tvb.datatypes.surfaces.Surface attribute) hemisphere_order_indices (tvb.datatypes.connectivity.Connectivity property) HEMISPHERE_RIGHT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) hemispheres (tvb.datatypes.connectivity.Connectivity attribute) HEMISPHERES (tvb.simulator.monitors.DefaultMasks attribute) hemodynamic_response_function (tvb.simulator.monitors.Bold attribute) HEUN (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) HeunDeterministic (class in tvb.simulator.integrators) HeunDeterministicViewModel (class in tvb.core.entities.file.simulator.view_model) HeunStochastic (class in tvb.simulator.integrators) HeunStochasticViewModel (class in tvb.core.entities.file.simulator.view_model) Hi (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) HI_FIELD (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) HiddenField (class in tvb.core.neotraits.forms) hide_launch_and_setup_pse_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) hide_previous_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) Hiki (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) HistogramViewer (class in tvb.adapters.visualizers.histogram) HistogramViewerForm (class in tvb.adapters.visualizers.histogram) HistogramViewerModel (class in tvb.adapters.visualizers.histogram) history (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) (tvb.simulator.simulator.Simulator attribute) history_gid (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel attribute) HOME_FOLDER_MOUNT (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) Hopfield (class in tvb.simulator.models.hopfield) HOPFIELD (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) HopfieldModelForm (class in tvb.adapters.forms.model_forms) horizon (tvb.datatypes.connectivity.Connectivity property) host_ip (tvb.core.entities.model.model_operation.OperationProcessIdentifier attribute) HPC_LAUNCHER_SH_SCRIPT (tvb.basic.config.settings.HPCSettings attribute) HPCController (class in tvb.interfaces.web.controllers.hpc_controller) HPCJobStatus (class in tvb.core.services.backend_clients.hpc_scheduler_client) HPCOperationService (class in tvb.core.services.hpc_operation_service) HPCOperationThread (class in tvb.core.services.backend_clients.hpc_scheduler_client) HPCSchedulerClient (class in tvb.core.services.backend_clients.hpc_scheduler_client) HPCSettings (class in tvb.basic.config.settings) HPCSimulatorAdapter (class in tvb.adapters.simulator.hpc_simulator_adapter) HPCTimeseriesMetricsAdapter (class in tvb.adapters.simulator.hpc_simulator_adapter) hrf_kernel (tvb.simulator.monitors.Bold attribute) hrf_length (tvb.simulator.monitors.Bold attribute) HRFKernelEquation (class in tvb.datatypes.equations) HYPERBOLIC_TANGENT (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) HyperbolicTangent (class in tvb.simulator.coupling) HyperbolicTangentCouplingForm (class in tvb.adapters.forms.coupling_forms)

I

I (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) I_0 (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) i_mode (tvb.adapters.visualizers.ica.ICAModel attribute) I_o (tvb.simulator.models.wong_wang.ReducedWongWang attribute) i_svar (tvb.adapters.visualizers.ica.ICAModel attribute) ICA (class in tvb.adapters.visualizers.ica) ICAAdapter (class in tvb.adapters.analyzers.ica_adapter) ICAAdapterForm (class in tvb.adapters.analyzers.ica_adapter) ICAAdapterModel (class in tvb.adapters.analyzers.ica_adapter) ICAForm (class in tvb.adapters.visualizers.ica) ICAModel (class in tvb.adapters.visualizers.ica) id (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_burst.Dynamic attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.model.model_datatype.Links attribute) (tvb.core.entities.model.model_datatype.MeasurePointsSelection attribute) (tvb.core.entities.model.model_datatype.StoredPSEFilter attribute) (tvb.core.entities.model.model_operation.Algorithm attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) (tvb.core.entities.model.model_operation.OperationProcessIdentifier attribute) (tvb.core.entities.model.model_operation.ResultFigure attribute) (tvb.core.entities.model.model_project.Project attribute) (tvb.core.entities.model.model_project.User attribute) (tvb.core.entities.model.model_project.User_to_Project attribute) (tvb.core.neotraits.db.HasTraitsIndex attribute) (tvb.core.neotraits.forms.Option attribute) idelays (tvb.datatypes.connectivity.Connectivity attribute) Identity (class in tvb.datatypes.equations) (class in tvb.simulator.integrators) IDENTITY (tvb.adapters.forms.equation_forms.TransferVectorEquationsEnum attribute) IdentityEquationForm (class in tvb.adapters.forms.equation_forms) IdentityStochastic (class in tvb.simulator.integrators) IdentityViewModel (class in tvb.core.entities.file.simulator.view_model) IE_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) iEEG (class in tvb.simulator.monitors) iEEGMonitorForm (class in tvb.adapters.forms.monitor_forms) iEEGViewModel (class in tvb.core.entities.file.simulator.view_model) Iext (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) Iext2 (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) II_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) IMAGES_FOLDER (tvb.storage.storage_interface.StorageInterface attribute) ImaginaryCoherenceDisplay (class in tvb.adapters.visualizers.complex_imaginary_coherence) ImaginaryCoherenceDisplayForm (class in tvb.adapters.visualizers.complex_imaginary_coherence) ImaginaryCoherenceDisplayModel (class in tvb.adapters.visualizers.complex_imaginary_coherence) ImmutableAttrError import_adapters() (in module tvb.config.init.introspector_registry) import_conn_h5() (in module tvb.interfaces.command.lab) import_conn_zip() (in module tvb.interfaces.command.lab) import_datatype_to_rest_client() (tvb.storage.storage_interface.StorageInterface method) import_dt_index() (in module tvb.config.init.introspector_registry) import_h5() (in module tvb.interfaces.command.demos.importers.h5_import) import_list_of_operations() (tvb.core.services.import_service.ImportService method) import_operation() (tvb.core.services.import_service.ImportService static method) import_project_structure() (tvb.core.services.import_service.ImportService method) import_simulator_configuration_zip() (tvb.core.services.import_service.ImportService method) import_surface_rm() (in module tvb.interfaces.command.demos.importers.brain_tumor_connectivity_importer) import_tumor_connectivities() (in module tvb.interfaces.command.demos.importers.brain_tumor_connectivity_importer) ImportException ImportExportEncryptionHandler (class in tvb.storage.h5.encryption.import_export_encryption_handler) ImportService (class in tvb.core.services.import_service) IN_OPERATION_EXECUTION_PROCESS (tvb.basic.config.settings.ClusterSettings attribute) (tvb.basic.config.settings.HPCSettings attribute) inc_project_usage_count() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) inc_running_op_count() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) include_branch_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_launch_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_launch_pse_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_next_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_previous_button (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_setup_noise (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_setup_pse (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_setup_region_model (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) include_setup_surface_model (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) IncompatibleFileManagerException IncorrectTypeAttrError IndependentComponents (class in tvb.datatypes.mode_decompositions) IndependentComponentsH5 (class in tvb.adapters.datatypes.h5.mode_decompositions_h5) IndependentComponentsIndex (class in tvb.adapters.datatypes.db.mode_decompositions) index() (in module tvb.interfaces.web.run_landing_page) (tvb.interfaces.web.controllers.base_controller.BaseController method) (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController method) (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method) (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) (tvb.interfaces.web.controllers.users_controller.UserController method) index_for_h5_file() (in module tvb.core.neocom.h5) infected_threshold() (in module tvb.adapters.creators.allen_creator) init_cherrypy() (in module tvb.interfaces.web.run) init_noise_config_values() (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController static method) init_paths() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) init_session_at_burst_loading() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) init_session_at_copy_preparation() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) init_session_at_sim_config_from_zip() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) init_session_at_sim_reset() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) init_siibra_options() (in module tvb.adapters.creators.siibra_creator) init_siibra_params() (in module tvb.adapters.creators.siibra_base) init_statevariables() (tvb.rateML.XML2model.RateML method) init_watcher() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) initial() (tvb.simulator.models.base.Model method) initial_conditions (tvb.simulator.simulator.Simulator attribute) initial_for_simulator() (tvb.simulator.models.base.Model method) initialize() (in module tvb.config.init.initializer) (tvb.simulator.history.BaseHistory method) (tvb.simulator.history.DenseHistory method) initialize_flask() (in module tvb.interfaces.rest.server.run) initialize_for_deployment() (tvb.basic.config.profile_settings.BaseSettingsProfile method) (tvb.config.profile_settings.TestSQLiteProfile method) (tvb.config.profile_settings.WebSettingsProfile method) initialize_profile() (tvb.basic.config.profile_settings.BaseSettingsProfile method) (tvb.config.profile_settings.TestSQLiteProfile method) (tvb.config.profile_settings.WebSettingsProfile method) initialize_startup() (in module tvb.config.init.model_manager) initialize_storage() (in module tvb.core.services.project_service) initialize_tvb_flask() (in module tvb.interfaces.rest.server.run) initialized (tvb.simulator.descriptors.Final.State attribute) (tvb.simulator.descriptors.NDArray.State attribute) initiate_operation() (tvb.core.services.operation_service.OperationService method) initiate_prelaunch() (tvb.core.services.operation_service.OperationService method) inj_f_thresh (tvb.adapters.creators.allen_creator.AllenConnectModel attribute) input_data (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterModel attribute) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplayModel attribute) (tvb.adapters.visualizers.eeg_monitor.EegMonitorModel attribute) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumModel attribute) (tvb.adapters.visualizers.histogram.HistogramViewerModel attribute) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizerModel attribute) input_shape (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter attribute) input_transformation() (tvb.analyzers.fmri_balloon.BalloonModel method) insert_line_numbers() (tvb.simulator.backend.templates.MakoUtilMix method)

install_traced_noop() (in module tvb.interfaces.web.controllers.autologging) instance (tvb.basic.neotraits._core.TupleEnum property) instance_state (tvb.simulator.descriptors.NDArray attribute) Int (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) integrate() (tvb.simulator.integrators.Integrator method) integrate_next_step (tvb.simulator.simulator.Simulator attribute) integrate_with_update() (tvb.simulator.integrators.Integrator method) integration_bound_and_clamp() (tvb.simulator.integrators.Integrator method) Integrator (class in tvb.simulator.integrators) integrator (tvb.analyzers.fmri_balloon.BalloonModel attribute) (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel attribute) (tvb.simulator.simulator.Simulator attribute) integrator_class (tvb.core.entities.model.model_burst.Dynamic attribute) integrator_noise_rng_state_algo (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) integrator_noise_rng_state_cached_gauss (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) integrator_noise_rng_state_has_gauss (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) integrator_noise_rng_state_keys (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) integrator_noise_rng_state_pos (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) integrator_parameters (tvb.core.entities.model.model_burst.Dynamic attribute) integrator_parameters_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) IntegratorForm (class in tvb.adapters.forms.integrator_forms) IntegratorStochastic (class in tvb.simulator.integrators) IntegratorStochasticForm (class in tvb.adapters.forms.integrator_forms) IntegratorStochasticViewModel (class in tvb.core.entities.file.simulator.view_model) IntegratorViewModel (class in tvb.core.entities.file.simulator.view_model) IntegratorViewModelsEnum (class in tvb.core.entities.file.simulator.view_model) interest_area_indexes (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorModel attribute) IntField (class in tvb.core.neotraits.forms) introspect() (tvb.config.init.initializer.Introspector method) IntrospectionException IntrospectionRegistry (class in tvb.config.init.introspector_registry) Introspector (class in tvb.config.init.initializer) invalid (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) InvalidExportDataException InvalidFilterChainInput InvalidFilterEntity InvalidFormValues InvalidIdentifierException InvalidInputException InvalidParameterException InvalidSettingsException InvalidStorageEncryptionException InvalidTransactionAccess InvalidUpgradeScriptException invalis_name_msg (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) INVOKE_ADAPTER (tvb.core.adapters.abcdisplayer.URLGenerator attribute) invoke_adapter() (tvb.interfaces.web.controllers.flow_controller.FlowController method) iround() (tvb.simulator.backend.ref.RefBase static method) is_administrator() (tvb.core.entities.model.model_project.User method) is_branch (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorModel attribute) is_burst_name_ok() (tvb.adapters.forms.simulator_fragments.SimulatorFinalFragment static method) is_data_a_group() (tvb.core.entities.model.model_datatype.DataTypeGroup static method) IS_DATA_ENCRYPTED (tvb.interfaces.rest.commons.strings.RestLink attribute) is_data_encrypted() (tvb.interfaces.rest.server.facades.datatype_facade.DatatypeFacade static method) is_datatype_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) is_distribution() (tvb.basic.config.environment.Environment static method) is_file_up_to_date() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) is_finished (tvb.core.entities.model.model_burst.BurstConfiguration property) is_first_run() (tvb.basic.config.stored.SettingsManager method) (tvb.basic.profile.TvbProfile static method) is_framework_present() (tvb.basic.config.environment.Environment method) is_group (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.transient.structure_entities.StructureNode property) is_in_usage() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) is_irelevant (tvb.core.entities.transient.structure_entities.StructureNode property) is_key_in_request_files() (tvb.interfaces.rest.server.resources.rest_resource.RestResource static method) is_library_mode() (tvb.basic.profile.TvbProfile static method) is_link (tvb.core.entities.transient.structure_entities.StructureNode property) is_linux() (tvb.basic.config.environment.Environment method) is_linux_deployment() (tvb.basic.config.environment.Environment method) is_mac() (tvb.basic.config.environment.Environment static method) is_mac_deployment() (tvb.basic.config.environment.Environment method) is_metric_operation (tvb.core.neotraits.view_model.ViewModel attribute) is_nan (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) is_new_file (tvb.core.neotraits._h5core.H5File attribute) (tvb.core.neotraits.h5.H5File attribute) is_old_form (tvb.core.services.import_service.Operation2ImportData property) is_online_help_active() (tvb.core.entities.model.model_project.User method) is_pse_burst() (tvb.core.entities.model.model_burst.BurstConfiguration method) is_range1_float() (tvb.adapters.visualizers.pse.PSEModel method) is_range2_float() (tvb.adapters.visualizers.pse.PSEModel method) is_right_hemisphere() (tvb.datatypes.connectivity.Connectivity method) IS_RUNNING_ON_CLUSTER_NODE (tvb.basic.config.settings.ClusterSettings property) is_storage_ready() (tvb.interfaces.web.controllers.users_controller.UserController method) is_surface_simulation (tvb.simulator.simulator.Simulator property) is_ts (tvb.core.entities.model.model_datatype.DataType property) is_upload_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) is_username_valid() (tvb.core.services.user_service.UserService static method) is_valid_tvb_file() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) is_windows() (tvb.basic.config.environment.Environment static method) is_windows_deployment() (tvb.basic.config.environment.Environment method) ISOCLINE_PSE_ADAPTER_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) ISOCLINE_PSE_ADAPTER_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) IsoclinePSEAdapter (class in tvb.adapters.visualizers.pse_isocline) IsoclinePSEAdapterForm (class in tvb.adapters.visualizers.pse_isocline) IsoclinePSEAdapterModel (class in tvb.adapters.visualizers.pse_isocline) istep (tvb.simulator.monitors.Monitor attribute) iter_accessors() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) iter_datasets() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method)

J

J (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.simulator.models.jansen_rit.JansenRit attribute) J_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) J_N (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) J_NMDA (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) JANSEN_RIT (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) JansenRit (class in tvb.simulator.models.jansen_rit) JansenRitModelForm (class in tvb.adapters.forms.model_forms) JI (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) job_id (tvb.core.entities.model.model_operation.OperationProcessIdentifier attribute)

JOB_ID_STRING (tvb.basic.config.settings.ClusterSettings property) JOB_MOUNT_POINT_KEY (tvb.basic.config.settings.HPCSettings attribute) JOB_STATUS_KEY (tvb.basic.config.settings.HPCSettings attribute) join() (tvb.storage.storage_interface.StorageInterface method) Json (class in tvb.core.neotraits._h5accessors) (class in tvb.core.neotraits.h5) JSON_EXTENSION (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) JsonFinal (class in tvb.core.neotraits._h5accessors) JsonFinal.StateVariablesDecoder (class in tvb.core.neotraits._h5accessors) JsonFinal.StateVariablesEncoder (class in tvb.core.neotraits._h5accessors) jsonify() (in module tvb.interfaces.web.controllers.decorators) JsonRange (class in tvb.core.neotraits._h5accessors)

K

K11 (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) K12 (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) K21 (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) k_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) k_i (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) K_ION_EXCHANGE (tvb.simulator.models.ModelsEnum attribute) ke (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) ke_2 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) keke (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) key (tvb.core.entities.model.model_project.UserPreferences attribute) KEY_ADMIN_DISPLAY_NAME (tvb.core.services.settings_service.SettingsService attribute) KEY_ADMIN_EMAIL (tvb.core.services.settings_service.SettingsService attribute) KEY_ADMIN_NAME (tvb.core.services.settings_service.SettingsService attribute) KEY_ADMIN_PWD (tvb.core.services.settings_service.SettingsService attribute) KEY_AUTHOR (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_BURST (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_BURST_CONFIG (tvb.interfaces.web.entities.context_simulator.SimulatorContext attribute) KEY_CACHED_DYNAMIC_MODEL (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController attribute) KEY_CLASS_NAME (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CLUSTER (tvb.core.services.settings_service.SettingsService attribute) KEY_CLUSTER_SCHEDULER (tvb.core.services.settings_service.SettingsService attribute) KEY_CONTENT (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) KEY_COUNT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CREATE_DATA_DAY (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CREATE_DATA_MONTH (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CUTOFF (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator attribute) KEY_DATATYPE_ID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_DATE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_DB_URL (tvb.core.services.settings_service.SettingsService attribute) KEY_DISPLAY_NAME (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator attribute) KEY_EDGE_TRACT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) key_edge_tract (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute) KEY_EDGE_WEIGHT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) key_edge_weight (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute) KEY_ENABLE_KC_LOGIN (tvb.core.services.settings_service.SettingsService attribute) KEY_EQUATION (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator attribute) KEY_FK_OPERATION_GROUP (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_FLOAT_HI (tvb.core.entities.transient.range_parameter.RangeParameter attribute) KEY_FLOAT_LO (tvb.core.entities.transient.range_parameter.RangeParameter attribute) KEY_FLOAT_STEP (tvb.core.entities.transient.range_parameter.RangeParameter attribute) KEY_FOCAL_POINTS_TRIANGLES (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator attribute) KEY_GID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_INVALID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_IS_ADAPTER (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) KEY_IS_LOAD_AFTER_REDIRECT (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController attribute) KEY_IS_SIMULATOR_BRANCH (tvb.interfaces.web.entities.context_simulator.SimulatorContext attribute) KEY_IS_SIMULATOR_COPY (tvb.interfaces.web.entities.context_simulator.SimulatorContext attribute) KEY_IS_SIMULATOR_LOAD (tvb.interfaces.web.entities.context_simulator.SimulatorContext attribute) KEY_KC_CONFIG (tvb.core.services.settings_service.SettingsService attribute) KEY_KC_WEB_CONFIG (tvb.core.services.settings_service.SettingsService attribute) KEY_KEEP_SAME_SIM_WIZARD (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController attribute) KEY_LAST_LOADED_FORM_URL (tvb.interfaces.web.entities.context_simulator.SimulatorContext attribute) KEY_LINK (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_MAX_DISK_SPACE_USR (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_NR_SURFACE_VERTEX (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_NR_THREADS (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_RANGE (tvb.core.services.settings_service.SettingsService attribute) KEY_MODULE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_NODE_COORDINATES (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) key_node_coordinates (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute)

KEY_NODE_HEMISPHERE (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) key_node_hemisphere (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute) KEY_NODE_LABEL (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) key_node_label (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute) KEY_NODE_REGION (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) key_node_region (tvb.adapters.uploaders.networkx_importer.NetworkxImporterModel attribute) KEY_NODE_TYPE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OP_GROUP_ID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_ALGORITHM (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_FILTERS (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) KEY_OPERATION_GROUP_NAME (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_TAG (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_TYPE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPTION_READ_METADATA (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) KEY_PARAM1 (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) KEY_PARAM2 (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) KEY_PARAMETERS (tvb.core.neotraits._h5accessors.EquationScalar attribute) KEY_PORT (tvb.core.services.settings_service.SettingsService attribute) KEY_RELEVANCY (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_SELECTED_DB (tvb.core.services.settings_service.SettingsService attribute) KEY_SIMULATOR_CONFIG (tvb.interfaces.web.entities.context_simulator.SimulatorContext attribute) KEY_SPATIAL (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator attribute) KEY_STATE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_STORAGE (tvb.core.services.settings_service.SettingsService attribute) KEY_SUBJECT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_SURFACE (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator attribute) KEY_TAG_1 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_2 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_3 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_4 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_5 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TEMPORAL (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator attribute) KEY_TITLE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TYPE (tvb.core.neotraits._h5accessors.EquationScalar attribute) KEY_VIEW_MODEL (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute) KEY_WRITTEN_BY (tvb.core.neotraits._h5core.H5File attribute) (tvb.core.neotraits.h5.H5File attribute) KEYCLOAK_REFRESH_TOKEN (tvb.interfaces.rest.commons.strings.FormKeyInput attribute) keycloak_web_config() (tvb.interfaces.web.controllers.users_controller.UserController method) KeycloakLoginForm (class in tvb.interfaces.web.controllers.users_controller) KEYS_DISPLAY_ORDER (tvb.core.services.settings_service.SettingsService attribute) KEYS_FOLDER (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) Kf (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) ki (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) ki_2 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) kiki (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) Ks (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) KubeController (class in tvb.interfaces.web.controllers.kube_controller) KubeNotifier (class in tvb.storage.kube.kube_notifier) Kuramoto (class in tvb.simulator.coupling) (class in tvb.simulator.models.oscillator) KURAMOTO (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) KuramotoCouplingForm (class in tvb.adapters.forms.coupling_forms) KuramotoModelForm (class in tvb.adapters.forms.model_forms) KuramotoT (class in tvb.rateML.generatedModels.kuramoto) Kvf (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute)

L

label (tvb.core.neotraits.forms.Option attribute) LabelField (class in tvb.core.neotraits.forms) labels (tvb.datatypes.sensors.Sensors attribute) labels_dimensions (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.datatypes.time_series.TimeSeries attribute) labels_ordering (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.datatypes.fcd.Fcd attribute) (tvb.datatypes.graph.CorrelationCoefficients attribute) (tvb.datatypes.temporal_correlations.CrossCorrelation attribute) (tvb.datatypes.time_series.TimeSeries attribute) (tvb.datatypes.time_series.TimeSeriesEEG attribute) (tvb.datatypes.time_series.TimeSeriesMEG attribute) (tvb.datatypes.time_series.TimeSeriesRegion attribute) (tvb.datatypes.time_series.TimeSeriesSEEG attribute) (tvb.datatypes.time_series.TimeSeriesSurface attribute) (tvb.datatypes.time_series.TimeSeriesVolume attribute) lamda (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) laplace_beltrami() (tvb.datatypes.surfaces.Surface method) LARTER_BREAKSPEAR (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) LarterBreakspear (class in tvb.simulator.models.larter_breakspear) LarterBreakspearModelForm (class in tvb.adapters.forms.model_forms) last_introspection_check (tvb.core.entities.model.model_operation.Algorithm attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) last_loaded_fragment_url (tvb.interfaces.web.entities.context_simulator.SimulatorContext property) last_updated (tvb.core.entities.model.model_project.Project attribute) launch() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.bct_adapters.BaseUndirected method) (tvb.adapters.analyzers.bct_adapters.DistanceDBIN method) (tvb.adapters.analyzers.bct_adapters.DistanceDWEI method) (tvb.adapters.analyzers.bct_adapters.DistanceNETW method) (tvb.adapters.analyzers.bct_adapters.DistanceRDA method) (tvb.adapters.analyzers.bct_adapters.DistanceRDM method) (tvb.adapters.analyzers.bct_adapters.ModularityOCSM method) (tvb.adapters.analyzers.bct_adapters.ModularityOpCSMU method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityEigenVector method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityKCoreness method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityKCorenessBD method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityNodeBinary method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityNodeWeighted method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityShortcuts method) (tvb.adapters.analyzers.bct_centrality_adapters.FlowCoefficients method) (tvb.adapters.analyzers.bct_centrality_adapters.ParticipationCoefficient method) (tvb.adapters.analyzers.bct_centrality_adapters.ParticipationCoefficientSign method) (tvb.adapters.analyzers.bct_centrality_adapters.SubgraphCentrality method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficient method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientBU method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientWD method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientWU method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityBinaryDirected method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityBinaryUnDirected method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityWeightedDirected method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityWeightedUnDirected method) (tvb.adapters.analyzers.bct_degree_adapters.Degree method) (tvb.adapters.analyzers.bct_degree_adapters.DegreeIOD method) (tvb.adapters.analyzers.bct_degree_adapters.DensityDirected method) (tvb.adapters.analyzers.bct_degree_adapters.DensityUndirected method) (tvb.adapters.analyzers.bct_degree_adapters.MatchingIndex method) (tvb.adapters.analyzers.bct_degree_adapters.Strength method) (tvb.adapters.analyzers.bct_degree_adapters.StrengthISOS method) (tvb.adapters.analyzers.bct_degree_adapters.StrengthWeights method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.siibra_creator.SiibraCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.bids_importer.BIDSImporter method) (tvb.adapters.uploaders.brco_importer.BRCOImporter method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporter method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporter method) (tvb.adapters.uploaders.sensors_importer.SensorsImporter method) (tvb.adapters.uploaders.tract_importer.TrackvizTractsImporter method) (tvb.adapters.uploaders.tract_importer.ZipTxtTractsImporter method) (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter method) (tvb.adapters.uploaders.tvb_importer.TVBImporter method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizer method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizer method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.ica.ICA method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method) (tvb.adapters.visualizers.matrix_viewer.MappedArrayVisualizer method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method) (tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MappedArrayVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiser method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewer method) (tvb.adapters.visualizers.surface_view.RegionMappingViewer method) (tvb.adapters.visualizers.surface_view.SurfaceViewer method) (tvb.adapters.visualizers.time_series.TimeSeriesDisplay method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.tract.TractViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method) LAUNCH_ANALYZERS_MODEL_FILE (tvb.interfaces.rest.commons.strings.RequestFileKey attribute) LAUNCH_BRANCH (tvb.core.services.burst_service.BurstService attribute) launch_mode (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator attribute) (tvb.core.adapters.abcadapter.ABCAdapter attribute) (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) (tvb.core.adapters.abcuploader.ABCUploader attribute) LAUNCH_NEW (tvb.core.services.burst_service.BurstService attribute) LAUNCH_OPERATION (tvb.interfaces.rest.commons.strings.RestLink attribute) launch_operation() (tvb.core.services.operation_service.OperationService method) (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.rest.server.facades.operation_facade.OperationFacade method) launch_pse() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) LAUNCH_PSE_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) launch_simulation() (tvb.interfaces.rest.server.facades.simulation_facade.SimulationFacade method) (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) launchable (tvb.config.algorithm_categories.AlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.AnalyzeAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.ViewAlgorithmCategoryConfig attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) LaunchException launchloader() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) LEFT_SUFFIX_RE (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) legendtext (built-in class) LIBRARY_PROFILE (tvb.basic.profile.TvbProfile attribute) LibrarySettingsProfile (class in tvb.basic.config.profile_settings) Linear (class in tvb.datatypes.equations) (class in tvb.simulator.coupling) (class in tvb.simulator.models.linear) LINEAR (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) (tvb.adapters.forms.equation_forms.TransferVectorEquationsEnum attribute) (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.analyzers.fmri_balloon.BoldModels attribute) (tvb.simulator.models.ModelsEnum attribute)

linear_interp1d() (tvb.simulator.backend.ref.RefBase static method) LINEAR_INTERVAL (tvb.adapters.forms.equation_forms.TransferVectorEquationsEnum attribute) LinearCouplingForm (class in tvb.adapters.forms.coupling_forms) LinearEquationForm (class in tvb.adapters.forms.equation_forms) LinearModelForm (class in tvb.adapters.forms.model_forms) linked_has_traits (tvb.core.entities.file.simulator.view_model.AdditiveNoiseViewModel property) (tvb.core.entities.file.simulator.view_model.BoldRegionROIViewModel property) (tvb.core.entities.file.simulator.view_model.BoldViewModel property) (tvb.core.entities.file.simulator.view_model.CortexViewModel property) (tvb.core.entities.file.simulator.view_model.Dop853StochasticViewModel property) (tvb.core.entities.file.simulator.view_model.Dop853ViewModel property) (tvb.core.entities.file.simulator.view_model.Dopri5StochasticViewModel property) (tvb.core.entities.file.simulator.view_model.Dopri5ViewModel property) (tvb.core.entities.file.simulator.view_model.EEGViewModel property) (tvb.core.entities.file.simulator.view_model.EulerDeterministicViewModel property) (tvb.core.entities.file.simulator.view_model.EulerStochasticViewModel property) (tvb.core.entities.file.simulator.view_model.GlobalAverageViewModel property) (tvb.core.entities.file.simulator.view_model.HeunDeterministicViewModel property) (tvb.core.entities.file.simulator.view_model.HeunStochasticViewModel property) (tvb.core.entities.file.simulator.view_model.IdentityViewModel property) (tvb.core.entities.file.simulator.view_model.iEEGViewModel property) (tvb.core.entities.file.simulator.view_model.IntegratorStochasticViewModel property) (tvb.core.entities.file.simulator.view_model.IntegratorViewModel property) (tvb.core.entities.file.simulator.view_model.MEGViewModel property) (tvb.core.entities.file.simulator.view_model.MonitorViewModel property) (tvb.core.entities.file.simulator.view_model.MultiplicativeNoiseViewModel property) (tvb.core.entities.file.simulator.view_model.NoiseViewModel property) (tvb.core.entities.file.simulator.view_model.ProjectionViewModel property) (tvb.core.entities.file.simulator.view_model.RawViewModel property) (tvb.core.entities.file.simulator.view_model.RungeKutta4thOrderDeterministicViewModel property) (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel property) (tvb.core.entities.file.simulator.view_model.SpatialAverageViewModel property) (tvb.core.entities.file.simulator.view_model.SubSampleViewModel property) (tvb.core.entities.file.simulator.view_model.TemporalAverageViewModel property) (tvb.core.entities.file.simulator.view_model.VODEStochasticViewModel property) (tvb.core.entities.file.simulator.view_model.VODEViewModel property) linked_has_traits() (tvb.core.neotraits.view_model.ViewModel method) linked_projects (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) LinkPlaceholder (class in tvb.interfaces.rest.commons.strings) Links (class in tvb.core.entities.model.model_datatype) LINKS (tvb.adapters.uploaders.tvb_importer.TVBImporter attribute) LinspaceRange (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) List (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) list_datatypes() (in module tvb.interfaces.command.lab) list_operation_results() (in module tvb.interfaces.command.lab) list_projects() (in module tvb.interfaces.command.lab) LO_FIELD (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) load() (in module tvb.core.neocom.h5), [1] (tvb.core.neocom._h5loader.DirLoader method) (tvb.core.neocom._h5loader.DtLoader method) (tvb.core.neocom._h5loader.Loader method) (tvb.core.neocom._h5loader.ViewModelLoader method) (tvb.core.neotraits._h5accessors.Accessor method) (tvb.core.neotraits._h5accessors.DataSet method) (tvb.core.neotraits._h5accessors.Enum method) (tvb.core.neotraits._h5accessors.EquationScalar method) (tvb.core.neotraits._h5accessors.Json method) (tvb.core.neotraits._h5accessors.JsonRange method) (tvb.core.neotraits._h5accessors.Scalar method) (tvb.core.neotraits._h5accessors.SparseMatrix method) (tvb.core.neotraits._h5accessors.Uuid method) (tvb.core.neotraits.h5.DataSet method) (tvb.core.neotraits.h5.Json method) (tvb.core.neotraits.h5.Reference method) (tvb.core.neotraits.h5.Scalar method) (tvb.core.neotraits.h5.SparseMatrix method) load_burst_configuration() (tvb.core.services.burst_service.BurstService static method) load_burst_configuration_from_folder() (tvb.core.services.burst_service.BurstService static method) load_burst_history() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) load_burst_read_only() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) load_complete_by_function() (tvb.core.neocom._h5loader.TVBLoader method) load_datatype_from_file() (tvb.core.services.import_service.ImportService method) (tvb.interfaces.rest.client.tvb_client.TVBClient method) load_datatype_with_full_references() (tvb.interfaces.rest.client.tvb_client.TVBClient method) load_datatype_with_links() (tvb.interfaces.rest.client.tvb_client.TVBClient method) load_dt() (in module tvb.interfaces.command.lab) load_entity_by_gid() (in module tvb.core.entities.load) (tvb.core.adapters.abcadapter.ABCAdapter method) load_figure() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.figure_service.FigureService static method) load_from_dir() (in module tvb.core.neocom.h5) load_from_gid() (in module tvb.core.neocom.h5) load_from_index() (in module tvb.core.neocom.h5) (tvb.core.neocom._h5loader.TVBLoader method) load_generic_attributes() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) load_ht() (in module tvb.core.neocom.h5) load_into() (tvb.adapters.datatypes.h5.connectivity_h5.ConnectivityH5 method) (tvb.adapters.datatypes.h5.graph_h5.ConnectivityMeasureH5 method) (tvb.adapters.datatypes.h5.local_connectivity_h5.LocalConnectivityH5 method) (tvb.adapters.datatypes.h5.sensors_h5.SensorsH5 method) (tvb.core.entities.file.simulator.burst_configuration_h5.BurstConfigurationH5 method) (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) load_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) load_model() (tvb.rateML.XML2model.RateML method) load_operation() (tvb.core.services.operation_service.OperationService static method) load_operation_by_gid() (tvb.core.services.project_service.ProjectService static method) load_operation_lazy_by_gid() (tvb.core.services.project_service.ProjectService static method) load_public_key() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler static method) load_readonly (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules property) load_region_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) load_simulation_from_zip() (tvb.core.services.burst_service.BurstService method) load_simulator_configuration_from_zip() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) load_surface_stimulus() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) load_traited_by_gid() (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCTimeseriesMetricsAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) load_view_model() (in module tvb.core.neocom.h5) (tvb.core.adapters.abcadapter.ABCAdapter method) load_view_model_from_file() (in module tvb.core.neocom.h5) load_with_links() (in module tvb.core.neocom.h5) (tvb.core.neocom._h5loader.TVBLoader method) load_with_links_from_dir() (in module tvb.core.neocom.h5) load_with_references() (in module tvb.core.neocom.h5), [1] (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.neocom._h5loader.TVBLoader method) load_with_references_from_dir() (in module tvb.core.neocom.h5) Loader (class in tvb.core.neocom._h5loader) local_conn (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewerModel attribute) local_connectivity (tvb.core.entities.file.simulator.view_model.CortexViewModel attribute) (tvb.datatypes.cortex.Cortex attribute) LocalConnectivity (class in tvb.datatypes.local_connectivity) LocalConnectivityController (class in tvb.interfaces.web.controllers.spatial.local_connectivity_controller) LocalConnectivityCreator (class in tvb.adapters.creators.local_connectivity_creator) LocalConnectivityCreatorForm (class in tvb.adapters.creators.local_connectivity_creator) LocalConnectivityCreatorModel (class in tvb.adapters.creators.local_connectivity_creator) LocalConnectivityH5 (class in tvb.adapters.datatypes.h5.local_connectivity_h5) LocalConnectivityIndex (class in tvb.adapters.datatypes.db.local_connectivity) LocalConnectivitySelectorForm (class in tvb.adapters.creators.local_connectivity_creator) LocalConnectivityViewer (class in tvb.adapters.visualizers.local_connectivity_view) LocalConnectivityViewerForm (class in tvb.adapters.visualizers.local_connectivity_view) LocalConnectivityViewerModel (class in tvb.adapters.visualizers.local_connectivity_view) LOCALHOST (tvb.basic.config.settings.WebSettings attribute) locations (tvb.datatypes.sensors.Sensors attribute) lock (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler attribute) LOCKS (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager attribute) log (in module tvb.analyzers.node_complex_coherence) (in module tvb.analyzers.wavelet) log_debug() (in module tvb.simulator.common) Logarithm (class in tvb.datatypes.equations) LOGARITHM (tvb.adapters.forms.equation_forms.TransferVectorEquationsEnum attribute) LogarithmEquationForm (class in tvb.adapters.forms.equation_forms) logdata() (tvb.rateML.run.model_driver.Driver_Setup method) (tvb.rateML.run.model_driver_bold.Driver_Setup method) (tvb.rateML.run.model_driver_zerlaut.Driver_Setup method) logged() (in module tvb.interfaces.web.controllers.autologging) logged_user (tvb.interfaces.web.entities.context_simulator.SimulatorContext property) logger (tvb.adapters.exporters.export_manager.ExportManager attribute) LOGGER (tvb.adapters.uploaders.brco.parser.XMLParser attribute) logger (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter attribute) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporter attribute) (tvb.adapters.uploaders.sensors_importer.SensorsImporter attribute) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter attribute) LOGGER (tvb.core.adapters.abcuploader.ABCUploader attribute) logger (tvb.core.entities.storage.root_dao.RootDAO attribute) LOGGER (tvb.core.services.hpc_operation_service.HPCOperationService attribute) logger (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter attribute) LOGGER (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController attribute) logger (tvb.storage.storage_interface.StorageInterface attribute) LOGGER_CONFIG_FILE_NAME (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) (tvb.basic.config.profile_settings.LibrarySettingsProfile attribute) (tvb.basic.config.profile_settings.MATLABLibraryProfile attribute) (tvb.basic.config.profile_settings.TestLibraryProfile attribute) (tvb.config.profile_settings.WebSettingsProfile attribute) LoggerBuilder (class in tvb.basic.logger.builder) LOGIN (tvb.interfaces.rest.commons.strings.RestLink attribute) LoginForm (class in tvb.interfaces.web.controllers.users_controller) logout() (tvb.interfaces.rest.client.tvb_client.TVBClient method) (tvb.interfaces.web.controllers.users_controller.UserController method) lookup (tvb.simulator.backend.templates.MakoUtilMix property)

M

m_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) MAGIC_NUMBER (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) MAIN_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) MainApi (class in tvb.interfaces.rest.client.main_api) make_gpu_data() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) make_kernel() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) make_proj_matrix() (in module tvb.datatypes.projections) make_sensors() (in module tvb.datatypes.sensors) make_surface() (in module tvb.datatypes.surfaces) MakoUtilMix (class in tvb.simulator.backend.templates) map_astr() (in module tvb.simulator.common) MappedArrayVisualizer (class in tvb.adapters.visualizers.matrix_viewer) MappedArrayVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping) mapping_file (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporterModel attribute) mappings_file (tvb.adapters.uploaders.nifti_importer.NIFTIImporterModel attribute) mark_burst_finished() (tvb.core.services.burst_service.BurstService method) mark_complete() (tvb.core.entities.model.model_operation.Operation method) mark_file_for_delete() (tvb.interfaces.web.controllers.base_controller.BaseController static method) mark_invalid() (tvb.core.entities.transient.structure_entities.DataTypeMetaData method) mark_stop() (tvb.storage.h5.encryption.data_encryption_handler.FoldersQueueConsumer method) (tvb.storage.storage_interface.StorageInterface method) marked_for_delete (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) marked_stop (tvb.storage.h5.encryption.data_encryption_handler.FoldersQueueConsumer attribute) MatchingIndex (class in tvb.adapters.analyzers.bct_degree_adapters) MATLAB_PROFILE (tvb.basic.profile.TvbProfile attribute) MATLABLibraryProfile (class in tvb.basic.config.profile_settings) matrix (tvb.datatypes.local_connectivity.LocalConnectivity attribute) matrix_gdist (tvb.datatypes.local_connectivity.LocalConnectivity attribute) matrix_non_zero_max (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) matrix_non_zero_mean (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) matrix_non_zero_min (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) MatrixVisualizerForm (class in tvb.adapters.visualizers.matrix_viewer) MatrixVisualizerModel (class in tvb.adapters.visualizers.matrix_viewer) max (tvb.core.neotraits.forms.FloatField attribute) (tvb.core.neotraits.forms.IntField attribute) max_freq (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum property) (tvb.datatypes.spectral.FourierSpectrum property) max_frequency (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) MAX_N_VERTICES (tvb.adapters.datatypes.h5.tracts_h5.TractsH5 attribute) max_operation_size (tvb.core.entities.model.model_project.Project attribute) MAX_PREVIEW_DATA_LENGTH (tvb.adapters.visualizers.time_series.TimeSeriesDisplay attribute) MAX_RAY (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MAX_SIZE_ERROR_MSG (tvb.interfaces.web.controllers.base_controller.BaseController attribute) MAX_VALUE (tvb.interfaces.web.controllers.settings_controller.SurfaceVerticesNrValidator attribute) MAX_WEIGHT_VALUE (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MAXIMUM_DOWNLOAD_RETRIES (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter attribute) measure (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerModel attribute) MEASURE_METRICS_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) MEASURE_METRICS_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) MeasurePointsSelection (class in tvb.core.entities.model.model_datatype) MEG (class in tvb.simulator.monitors) (tvb.datatypes.projections.ProjectionsTypeEnum attribute) MEGMonitorForm (class in tvb.adapters.forms.monitor_forms) MEGViewModel (class in tvb.core.entities.file.simulator.view_model) members (tvb.core.entities.model.model_project.Project attribute) memory_requirement() (tvb.simulator.simulator.Simulator method) merge() (tvb.core.neotraits._h5accessors.DataSetMetaData method) (tvb.datatypes.surfaces.ValidationResult method) merge_data() (tvb.core.entities.transient.structure_entities.DataTypeMetaData method) MESSAGE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) message_prefix (tvb.interfaces.rest.commons.exceptions.ServiceException attribute) meta_attributes_list (tvb.core.entities.transient.context_overlay.CommonDetails property) MetaClassFactory() (in module tvb.core.entities.storage.session_maker) metadata2tree() (tvb.core.entities.transient.structure_entities.StructureNode static method) MetaType (class in tvb.basic.neotraits._declarative_base) method_decorators (tvb.interfaces.rest.server.resources.rest_resource.RestResource attribute) (tvb.interfaces.rest.server.resources.rest_resource.SecuredResource attribute) metric_operation_group (tvb.core.entities.model.model_burst.BurstConfiguration attribute) metrics (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.core.entities.file.simulator.datatype_measure_h5.DatatypeMeasure attribute) MEXICAN_HAT (tvb.adapters.forms.equation_forms.SpatialEquationsEnum attribute) (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) midpoint (tvb.simulator.coupling.HyperbolicTangent attribute) (tvb.simulator.coupling.Sigmoidal attribute) (tvb.simulator.coupling.SigmoidalJansenRit attribute) min (tvb.core.neotraits.forms.FloatField attribute) (tvb.core.neotraits.forms.IntField attribute) MIN_RAY (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MIN_WEIGHT_VALUE (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) missing_value (tvb.core.neotraits.forms.DynamicSelectField attribute) (tvb.core.neotraits.forms.SelectField attribute) (tvb.core.neotraits.forms.TraitDataTypeSelectField attribute) MissingDataException MissingDataFileException MissingDataSetException MissingReferenceException mixing_matrix (tvb.datatypes.mode_decompositions.IndependentComponents attribute) MixtureOfGammas (class in tvb.datatypes.equations) MixtureOfGammasEquationForm (class in tvb.adapters.forms.equation_forms) Model (class in tvb.simulator.models.base) model (tvb.simulator.simulator.Simulator attribute) model_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) model_class (tvb.core.entities.model.model_burst.Dynamic attribute) MODEL_FRAGMENT_KEY (tvb.adapters.forms.form_with_ranges.FormWithRanges attribute) MODEL_PARAM_FIELD (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController attribute) model_parameters (tvb.core.entities.model.model_burst.Dynamic attribute) ModelForm (class in tvb.adapters.forms.model_forms) ModelNumbaDfun (class in tvb.simulator.models.base) ModelsEnum (class in tvb.adapters.forms.model_forms) (class in tvb.simulator.models) modification (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) ModularityOCSM (class in tvb.adapters.analyzers.bct_adapters) ModularityOpCSMU (class in tvb.adapters.analyzers.bct_adapters) module tvb.__init__ tvb.adapters.analyzers tvb.adapters.analyzers.bct_adapters tvb.adapters.analyzers.bct_centrality_adapters tvb.adapters.analyzers.bct_clustering_adapters tvb.adapters.analyzers.bct_degree_adapters tvb.adapters.analyzers.cross_correlation_adapter tvb.adapters.analyzers.fcd_adapter tvb.adapters.analyzers.fmri_balloon_adapter tvb.adapters.analyzers.fourier_adapter tvb.adapters.analyzers.ica_adapter tvb.adapters.analyzers.metrics_group_timeseries tvb.adapters.analyzers.node_coherence_adapter tvb.adapters.analyzers.node_complex_coherence_adapter tvb.adapters.analyzers.node_covariance_adapter tvb.adapters.analyzers.pca_adapter tvb.adapters.analyzers.wavelet_adapter tvb.adapters.creators tvb.adapters.creators.allen_creator tvb.adapters.creators.connectivity_creator tvb.adapters.creators.local_connectivity_creator tvb.adapters.creators.siibra_base tvb.adapters.creators.siibra_creator tvb.adapters.creators.stimulus_creator tvb.adapters.datatypes.db tvb.adapters.datatypes.db.annotation tvb.adapters.datatypes.db.connectivity tvb.adapters.datatypes.db.fcd tvb.adapters.datatypes.db.graph tvb.adapters.datatypes.db.local_connectivity tvb.adapters.datatypes.db.mapped_value tvb.adapters.datatypes.db.mode_decompositions tvb.adapters.datatypes.db.patterns tvb.adapters.datatypes.db.projections tvb.adapters.datatypes.db.region_mapping tvb.adapters.datatypes.db.sensors tvb.adapters.datatypes.db.simulation_history tvb.adapters.datatypes.db.spectral tvb.adapters.datatypes.db.structural tvb.adapters.datatypes.db.surface tvb.adapters.datatypes.db.temporal_correlations tvb.adapters.datatypes.db.time_series tvb.adapters.datatypes.db.tracts tvb.adapters.datatypes.db.volume tvb.adapters.datatypes.h5.annotation_h5 tvb.adapters.datatypes.h5.connectivity_h5 tvb.adapters.datatypes.h5.fcd_h5 tvb.adapters.datatypes.h5.graph_h5 tvb.adapters.datatypes.h5.local_connectivity_h5 tvb.adapters.datatypes.h5.mapped_value_h5 tvb.adapters.datatypes.h5.mode_decompositions_h5 tvb.adapters.datatypes.h5.patterns_h5 tvb.adapters.datatypes.h5.projections_h5 tvb.adapters.datatypes.h5.region_mapping_h5 tvb.adapters.datatypes.h5.sensors_h5 tvb.adapters.datatypes.h5.spectral_h5 tvb.adapters.datatypes.h5.structural_h5 tvb.adapters.datatypes.h5.surface_h5 tvb.adapters.datatypes.h5.temporal_correlations_h5 tvb.adapters.datatypes.h5.time_series_h5 tvb.adapters.datatypes.h5.tracts_h5 tvb.adapters.datatypes.h5.volumes_h5 tvb.adapters.exporters tvb.adapters.exporters.abcexporter tvb.adapters.exporters.exceptions tvb.adapters.exporters.export_manager tvb.adapters.exporters.tvb_export tvb.adapters.exporters.tvb_linked_export tvb.adapters.forms.coupling_forms tvb.adapters.forms.equation_forms tvb.adapters.forms.equation_plot_forms tvb.adapters.forms.form_with_ranges tvb.adapters.forms.integrator_forms tvb.adapters.forms.model_forms tvb.adapters.forms.monitor_forms tvb.adapters.forms.noise_forms tvb.adapters.forms.simulator_fragments tvb.adapters.forms.surface_model_parameters_form tvb.adapters.forms.transfer_vector_form tvb.adapters.simulator tvb.adapters.simulator.hpc_simulator_adapter tvb.adapters.simulator.range_parameters tvb.adapters.simulator.simulator_adapter tvb.adapters.uploaders tvb.adapters.uploaders.bids_importer tvb.adapters.uploaders.brco.parser tvb.adapters.uploaders.brco_importer tvb.adapters.uploaders.connectivity_measure_importer tvb.adapters.uploaders.csv_connectivity_importer tvb.adapters.uploaders.gifti.parser tvb.adapters.uploaders.gifti_surface_importer tvb.adapters.uploaders.gifti_timeseries_importer tvb.adapters.uploaders.mat.parser tvb.adapters.uploaders.mat_timeseries_eeg_importer tvb.adapters.uploaders.mat_timeseries_importer tvb.adapters.uploaders.networkx_connectivity.parser tvb.adapters.uploaders.networkx_importer tvb.adapters.uploaders.nifti.parser tvb.adapters.uploaders.nifti_importer tvb.adapters.uploaders.obj.parser tvb.adapters.uploaders.obj.surface tvb.adapters.uploaders.obj_importer tvb.adapters.uploaders.projection_matrix_importer tvb.adapters.uploaders.region_mapping_importer tvb.adapters.uploaders.sensors_importer tvb.adapters.uploaders.tract_importer tvb.adapters.uploaders.tumor_dataset_importer tvb.adapters.uploaders.tvb_importer tvb.adapters.uploaders.zip_connectivity_importer tvb.adapters.uploaders.zip_surface.parser tvb.adapters.uploaders.zip_surface_importer tvb.adapters.visualizers tvb.adapters.visualizers.annotations_viewer tvb.adapters.visualizers.brain tvb.adapters.visualizers.complex_imaginary_coherence tvb.adapters.visualizers.connectivity tvb.adapters.visualizers.connectivity_edge_bundle tvb.adapters.visualizers.cross_coherence tvb.adapters.visualizers.cross_correlation tvb.adapters.visualizers.eeg_monitor tvb.adapters.visualizers.fourier_spectrum tvb.adapters.visualizers.histogram tvb.adapters.visualizers.ica tvb.adapters.visualizers.local_connectivity_view tvb.adapters.visualizers.matrix_viewer tvb.adapters.visualizers.pca tvb.adapters.visualizers.pearson_cross_correlation tvb.adapters.visualizers.pearson_edge_bundle tvb.adapters.visualizers.phase_plane_interactive tvb.adapters.visualizers.pse tvb.adapters.visualizers.pse_discrete tvb.adapters.visualizers.pse_isocline tvb.adapters.visualizers.region_volume_mapping tvb.adapters.visualizers.sensors tvb.adapters.visualizers.surface_view tvb.adapters.visualizers.time_series tvb.adapters.visualizers.time_series_volume tvb.adapters.visualizers.topographic tvb.adapters.visualizers.tract tvb.adapters.visualizers.wavelet_spectrogram tvb.analyzers tvb.analyzers.fft tvb.analyzers.fmri_balloon tvb.analyzers.graph tvb.analyzers.ica tvb.analyzers.ica_algorithm tvb.analyzers.info tvb.analyzers.metric_kuramoto_index tvb.analyzers.metric_proxy_metastability tvb.analyzers.metric_variance_global tvb.analyzers.metric_variance_of_node_variance tvb.analyzers.node_coherence tvb.analyzers.node_complex_coherence tvb.analyzers.pca tvb.analyzers.wavelet tvb.basic.config.environment tvb.basic.config.profile_settings tvb.basic.config.settings tvb.basic.config.stored tvb.basic.config.utils tvb.basic.exceptions tvb.basic.logger.builder tvb.basic.logger.simple_handler tvb.basic.neotraits tvb.basic.neotraits._attr tvb.basic.neotraits._core tvb.basic.neotraits._declarative_base tvb.basic.neotraits.api tvb.basic.neotraits.ex, [1] tvb.basic.neotraits.info tvb.basic.profile tvb.basic.readers tvb.config tvb.config.algorithm_categories tvb.config.init.alembic.versions.32d4bf9f8ghj_update_db_004 tvb.config.init.datatypes_registry tvb.config.init.initializer tvb.config.init.introspector_registry tvb.config.init.model_manager tvb.config.logger.cluster_handler tvb.config.logger.elasticsearch_handler tvb.config.profile_settings tvb.core tvb.core.adapters.abcadapter tvb.core.adapters.abcdisplayer tvb.core.adapters.abcremover tvb.core.adapters.abcuploader tvb.core.adapters.arguments_serialisation tvb.core.adapters.constants tvb.core.adapters.exceptions tvb.core.adapters.inputs_processor tvb.core.code_versions tvb.core.code_versions.base_classes tvb.core.code_versions.code_update_manager tvb.core.code_versions.code_update_scripts tvb.core.code_versions.code_update_scripts.4455_update_code tvb.core.code_versions.code_update_scripts.4750_update_code tvb.core.code_versions.code_update_scripts.5454_update_code tvb.core.code_versions.code_update_scripts.6093_update_code tvb.core.code_versions.code_update_scripts.6600_update_code tvb.core.code_versions.code_update_scripts.6728_update_code tvb.core.code_versions.code_update_scripts.7350_update_code tvb.core.code_versions.code_update_scripts.7450_update_code tvb.core.code_versions.code_update_scripts.9444_update_code tvb.core.decorators tvb.core.entities.exportable tvb.core.entities.file.file_update_scripts tvb.core.entities.file.file_update_scripts.002_update_files tvb.core.entities.file.file_update_scripts.003_update_files tvb.core.entities.file.file_update_scripts.004_update_files tvb.core.entities.file.file_update_scripts.005_update_files tvb.core.entities.file.files_update_manager tvb.core.entities.file.simulator.burst_configuration_h5 tvb.core.entities.file.simulator.datatype_measure_h5 tvb.core.entities.file.simulator.simulation_history_h5 tvb.core.entities.file.simulator.view_model tvb.core.entities.filters.chain tvb.core.entities.filters.exceptions tvb.core.entities.filters.factory tvb.core.entities.generic_attributes tvb.core.entities.load tvb.core.entities.model tvb.core.entities.model.model_burst tvb.core.entities.model.model_datatype tvb.core.entities.model.model_operation tvb.core.entities.model.model_project tvb.core.entities.storage tvb.core.entities.storage.burst_dao tvb.core.entities.storage.datatype_dao tvb.core.entities.storage.exceptions tvb.core.entities.storage.operation_dao tvb.core.entities.storage.project_dao tvb.core.entities.storage.root_dao tvb.core.entities.storage.session_maker tvb.core.entities.storage.workflow_dao tvb.core.entities.transient tvb.core.entities.transient.context_overlay tvb.core.entities.transient.range_parameter tvb.core.entities.transient.structure_entities tvb.core.neocom._h5loader tvb.core.neocom._registry tvb.core.neocom.h5 tvb.core.neotraits._h5accessors tvb.core.neotraits._h5core tvb.core.neotraits.db tvb.core.neotraits.forms tvb.core.neotraits.h5 tvb.core.neotraits.spatial_model tvb.core.neotraits.uploader_view_model tvb.core.neotraits.view_model tvb.core.operation_async_launcher tvb.core.operation_hpc_launcher tvb.core.project_versions tvb.core.project_versions.project_update_manager tvb.core.project_versions.project_update_scripts tvb.core.project_versions.project_update_scripts.1_update_project tvb.core.project_versions.project_update_scripts.2_update_project tvb.core.project_versions.project_update_scripts.3_update_project tvb.core.removers_factory tvb.core.services tvb.core.services.algorithm_service tvb.core.services.authorization tvb.core.services.backend_client_factory tvb.core.services.backend_clients.backend_client tvb.core.services.backend_clients.cluster_scheduler_client tvb.core.services.backend_clients.hpc_scheduler_client tvb.core.services.backend_clients.standalone_client tvb.core.services.burst_config_serialization tvb.core.services.burst_service tvb.core.services.email_sender tvb.core.services.exceptions tvb.core.services.figure_service tvb.core.services.hpc_operation_service tvb.core.services.import_service tvb.core.services.operation_service tvb.core.services.project_service tvb.core.services.settings_service tvb.core.services.simulator_service tvb.core.services.texture_to_json tvb.core.services.user_service tvb.core.utils tvb.datatypes tvb.datatypes.connectivity tvb.datatypes.cortex tvb.datatypes.equations tvb.datatypes.fcd tvb.datatypes.graph tvb.datatypes.local_connectivity tvb.datatypes.mode_decompositions tvb.datatypes.patterns tvb.datatypes.projections tvb.datatypes.region_mapping tvb.datatypes.sensors tvb.datatypes.spectral tvb.datatypes.structural tvb.datatypes.surfaces tvb.datatypes.temporal_correlations tvb.datatypes.time_series tvb.datatypes.tracts tvb.datatypes.volumes tvb.interfaces tvb.interfaces.command.demos.datatypes.modify_h5_metadata tvb.interfaces.command.demos.datatypes.read_from_h5 tvb.interfaces.command.demos.datatypes.search_and_export tvb.interfaces.command.demos.datatypes.store_into_h5 tvb.interfaces.command.demos.importers.brain_tumor_connectivity_importer tvb.interfaces.command.demos.importers.h5_import tvb.interfaces.command.demos.importers.new_importer tvb.interfaces.command.demos.importers.new_importer_launcher tvb.interfaces.command.demos.operations.run_analyzer tvb.interfaces.command.demos.operations.run_simulation tvb.interfaces.command.demos.project.project_export tvb.interfaces.command.demos.project.project_import tvb.interfaces.command.lab tvb.interfaces.rest.bids_monitor.bids_data_builder tvb.interfaces.rest.bids_monitor.bids_dir_monitor tvb.interfaces.rest.bids_monitor.launch_bids_monitor tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test tvb.interfaces.rest.client.client_decorators tvb.interfaces.rest.client.main_api tvb.interfaces.rest.client.tests.rest_test tvb.interfaces.rest.client.tvb_client tvb.interfaces.rest.commons.decoders tvb.interfaces.rest.commons.dtos tvb.interfaces.rest.commons.exceptions tvb.interfaces.rest.commons.files_helper tvb.interfaces.rest.commons.status_codes tvb.interfaces.rest.commons.strings tvb.interfaces.rest.server.access_permissions.permissions tvb.interfaces.rest.server.facades.datatype_facade tvb.interfaces.rest.server.facades.operation_facade tvb.interfaces.rest.server.facades.project_facade tvb.interfaces.rest.server.facades.simulation_facade tvb.interfaces.rest.server.facades.user_facade tvb.interfaces.rest.server.request_helper tvb.interfaces.rest.server.resources.rest_resource tvb.interfaces.rest.server.rest_api tvb.interfaces.rest.server.run tvb.interfaces.web.controllers.autologging tvb.interfaces.web.controllers.base_controller tvb.interfaces.web.controllers.burst.base_controller tvb.interfaces.web.controllers.burst.dynamic_model_controller tvb.interfaces.web.controllers.burst.exploration_controller tvb.interfaces.web.controllers.burst.matjax tvb.interfaces.web.controllers.burst.noise_configuration_controller tvb.interfaces.web.controllers.burst.region_model_parameters_controller tvb.interfaces.web.controllers.burst.transfer_vector_controller tvb.interfaces.web.controllers.common tvb.interfaces.web.controllers.decorators tvb.interfaces.web.controllers.flow_controller tvb.interfaces.web.controllers.help.help_config tvb.interfaces.web.controllers.help.help_controller tvb.interfaces.web.controllers.hpc_controller tvb.interfaces.web.controllers.kube_controller tvb.interfaces.web.controllers.project.figure_controller tvb.interfaces.web.controllers.project.project_controller tvb.interfaces.web.controllers.settings_controller tvb.interfaces.web.controllers.simulator.monitors_wizard_handler tvb.interfaces.web.controllers.simulator.simulator_controller tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller tvb.interfaces.web.controllers.spatial.local_connectivity_controller tvb.interfaces.web.controllers.spatial.region_stimulus_controller tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller tvb.interfaces.web.controllers.spatial.surface_stimulus_controller tvb.interfaces.web.controllers.users_controller tvb.interfaces.web.entities.context_model_parameters tvb.interfaces.web.entities.context_overlay tvb.interfaces.web.entities.context_selected_adapter tvb.interfaces.web.entities.context_simulator tvb.interfaces.web.entities.context_transfer_vector tvb.interfaces.web.operations_assigner tvb.interfaces.web.request_handler tvb.interfaces.web.run tvb.interfaces.web.run_landing_page tvb.interfaces.web.structure tvb.rateML.generatedModels.epileptor tvb.rateML.generatedModels.kuramoto tvb.rateML.generatedModels.montbrio tvb.rateML.generatedModels.oscillator tvb.rateML.generatedModels.rwongwang tvb.rateML.run.model_driver tvb.rateML.run.model_driver_bold tvb.rateML.run.model_driver_zerlaut tvb.rateML.run.regular_run tvb.rateML.XML2model tvb.simulator.backend tvb.simulator.backend.base tvb.simulator.backend.cu tvb.simulator.backend.nb tvb.simulator.backend.nb_mpr tvb.simulator.backend.np tvb.simulator.backend.ref tvb.simulator.backend.templates tvb.simulator.common tvb.simulator.coupling tvb.simulator.descriptors tvb.simulator.history tvb.simulator.integrators tvb.simulator.models tvb.simulator.models.base tvb.simulator.models.epileptor tvb.simulator.models.hopfield tvb.simulator.models.jansen_rit tvb.simulator.models.larter_breakspear tvb.simulator.models.linear tvb.simulator.models.oscillator tvb.simulator.models.stefanescu_jirsa tvb.simulator.models.wilson_cowan tvb.simulator.models.wong_wang tvb.simulator.monitors tvb.simulator.noise tvb.simulator.simulator tvb.storage.h5.decorators tvb.storage.h5.encryption.data_encryption_handler tvb.storage.h5.encryption.encryption_handler tvb.storage.h5.encryption.import_export_encryption_handler tvb.storage.h5.file tvb.storage.h5.file.exceptions tvb.storage.h5.file.files_helper tvb.storage.h5.file.hdf5_storage_manager tvb.storage.h5.file.xml_metadata_handlers tvb.storage.h5.utils tvb.storage.kube tvb.storage.kube.kube_notifier tvb.storage.storage_interface

module (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.model.model_operation.Algorithm attribute) MOG_KERNEL (tvb.adapters.forms.equation_forms.BoldMonitorEquationsEnum attribute) Monitor (class in tvb.simulator.monitors) monitor_dir() (in module tvb.interfaces.rest.bids_monitor.launch_bids_monitor) monitor_names (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_1 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_10 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_11 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_12 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_13 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_14 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_15 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_2 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_3 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_4 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_5 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_6 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_7 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_8 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) monitor_stock_9 (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory attribute) MonitorForm (class in tvb.adapters.forms.monitor_forms) monitors (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel attribute) (tvb.simulator.simulator.Simulator attribute) MonitorsWizardHandler (class in tvb.interfaces.web.controllers.simulator.monitors_wizard_handler) MonitorViewModel (class in tvb.core.entities.file.simulator.view_model) MONTBRIO_PAZO_ROXIN (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) MontbrioPazoRoxinModelForm (class in tvb.adapters.forms.model_forms) MontbrioT (class in tvb.rateML.generatedModels.montbrio) mother (tvb.adapters.analyzers.wavelet_adapter.WaveletAdapterModel attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) motif_all_to_all() (tvb.datatypes.connectivity.Connectivity method) motif_chain_directed() (tvb.datatypes.connectivity.Connectivity method) motif_chain_undirected() (tvb.datatypes.connectivity.Connectivity method) motif_linear_directed() (tvb.datatypes.connectivity.Connectivity method) motif_linear_undirected() (tvb.datatypes.connectivity.Connectivity method) mouse_brain_visualizer() (in module tvb.adapters.creators.allen_creator) move_datatype() (tvb.storage.h5.file.files_helper.FilesHelper method) move_datatype_with_sync() (tvb.storage.storage_interface.StorageInterface method) MriVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping) MriVolumeVisualizerForm (class in tvb.adapters.visualizers.region_volume_mapping) MSG_MISSING_CONNECTIVITY (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController attribute) MSG_MISSING_SURFACE (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController attribute) mu (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) Multiplicative (class in tvb.simulator.noise) MULTIPLICATIVE (tvb.adapters.forms.integrator_forms.NoiseTypesEnum attribute) MultiplicativeNoiseForm (class in tvb.adapters.forms.noise_forms) MultiplicativeNoiseViewModel (class in tvb.core.entities.file.simulator.view_model) MultiSelectField (class in tvb.core.neotraits.forms)

N

n_components (tvb.adapters.analyzers.ica_adapter.ICAAdapterModel attribute) (tvb.datatypes.mode_decompositions.IndependentComponents attribute) n_cvar (tvb.simulator.history.BaseHistory attribute) n_dx (tvb.simulator.integrators.EulerDeterministic attribute) (tvb.simulator.integrators.EulerStochastic attribute) (tvb.simulator.integrators.HeunDeterministic attribute) (tvb.simulator.integrators.HeunStochastic attribute) (tvb.simulator.integrators.Identity attribute) (tvb.simulator.integrators.IdentityStochastic attribute) (tvb.simulator.integrators.RungeKutta4thOrderDeterministic attribute) n_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) n_mode (tvb.simulator.history.BaseHistory attribute) n_nnzr (tvb.simulator.history.SparseHistory attribute) n_nnzw (tvb.simulator.history.SparseHistory attribute) n_node (tvb.simulator.history.BaseHistory attribute) n_time (tvb.simulator.history.BaseHistory attribute) name (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_burst.Dynamic attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) (tvb.core.entities.model.model_operation.ResultFigure attribute) (tvb.core.entities.model.model_project.Project attribute) NAME_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) NAME_EQATION_PARAMS_DIV (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelParametersForm attribute) NAME_EQUATION_PARAMS_DIV (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorForm attribute) NAME_FIELD (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) NAME_SPATIAL_PARAMS_DIV (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm attribute) NAME_TEMPORAL_PARAMS_DIV (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorForm attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorForm attribute) nan_allowed() (in module tvb.core.adapters.abcadapter) nan_not_allowed() (in module tvb.core.adapters.abcadapter) NArray (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) narray_describe() (in module tvb.basic.neotraits.api) (in module tvb.basic.neotraits.info) narray_summary_info() (in module tvb.basic.neotraits.api) (in module tvb.basic.neotraits.info) NbBackend (class in tvb.simulator.backend.nb) NbMPRBackend (class in tvb.simulator.backend.nb_mpr) nbytes (tvb.simulator.history.BaseHistory property) (tvb.simulator.history.DenseHistory property) (tvb.simulator.history.SparseHistory property) nbytes() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) NDArray (class in tvb.simulator.descriptors) NDArray.State (class in tvb.simulator.descriptors) ndarray_to_http_binary() (in module tvb.interfaces.web.controllers.decorators) ndim (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) NestedTransactionUnsupported NET_TOKEN (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) NetworkxConnectivityImporter (class in tvb.adapters.uploaders.networkx_importer) NetworkxConnectivityImporterForm (class in tvb.adapters.uploaders.networkx_importer) NetworkxImporterModel (class in tvb.adapters.uploaders.networkx_importer) NetworkxParser (class in tvb.adapters.uploaders.networkx_connectivity.parser) neural_input_transformation (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) NeuralInputTransformations (class in tvb.analyzers.fmri_balloon) NEW_MEMBERS_GID (tvb.interfaces.rest.commons.strings.FormKeyInput attribute) new_project() (in module tvb.interfaces.command.lab) NEW_SELECTION_NAME (tvb.interfaces.web.controllers.flow_controller.FlowController attribute) new_tracts (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorModel attribute) new_weights (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorModel attribute) nfft (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceModel attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.datatypes.spectral.CoherenceSpectrum attribute) NIFTIImporter (class in tvb.adapters.uploaders.nifti_importer) NIFTIImporterForm (class in tvb.adapters.uploaders.nifti_importer) NIFTIImporterModel (class in tvb.adapters.uploaders.nifti_importer) NIFTIParser (class in tvb.adapters.uploaders.nifti.parser) nintvar (tvb.simulator.models.base.Model property) nnonintvar (tvb.simulator.models.base.Model property)

nnz_col_el_idx (tvb.simulator.history.SparseHistory attribute) nnz_idelays (tvb.simulator.history.SparseHistory attribute) nnz_mask (tvb.simulator.history.SparseHistory attribute) nnz_row_el_idx (tvb.simulator.history.SparseHistory attribute) nnz_row_idx (tvb.simulator.history.SparseHistory attribute) nnz_weights (tvb.simulator.history.SparseHistory attribute) no_connectivity_measure_page() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) no_dynamics_page() (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method) no_of_ranges (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) NODE_ENV (tvb.basic.config.settings.ClusterSettings property) NODE_OPERATION_GROUP_TYPE (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) NODE_OPERATION_TYPE (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) NodeCoherenceAdapter (class in tvb.adapters.analyzers.node_coherence_adapter) NodeCoherenceForm (class in tvb.adapters.analyzers.node_coherence_adapter) NodeCoherenceModel (class in tvb.adapters.analyzers.node_coherence_adapter) NodeComplexCoherenceAdapter (class in tvb.adapters.analyzers.node_complex_coherence_adapter) NodeComplexCoherenceForm (class in tvb.adapters.analyzers.node_complex_coherence_adapter) NodeComplexCoherenceModel (class in tvb.adapters.analyzers.node_complex_coherence_adapter) NodeCovarianceAdapter (class in tvb.adapters.analyzers.node_covariance_adapter) NodeCovarianceAdapterForm (class in tvb.adapters.analyzers.node_covariance_adapter) NodeCovarianceAdapterModel (class in tvb.adapters.analyzers.node_covariance_adapter) noderemove() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) Noise (class in tvb.simulator.noise) noise (tvb.core.entities.file.simulator.view_model.IntegratorStochasticViewModel attribute) (tvb.simulator.integrators.IntegratorStochastic attribute) NOISE_FRAGMENT_KEY (tvb.adapters.forms.form_with_ranges.FormWithRanges attribute) noise_seed (tvb.simulator.noise.Noise attribute) NoiseConfigurationController (class in tvb.interfaces.web.controllers.burst.noise_configuration_controller) NoiseForm (class in tvb.adapters.forms.noise_forms) NoiseTypesEnum (class in tvb.adapters.forms.integrator_forms) NoiseViewModel (class in tvb.core.entities.file.simulator.view_model) NoMemoryAvailableException non_integrated_variables (tvb.simulator.models.base.Model attribute) NONE (tvb.analyzers.fmri_balloon.NeuralInputTransformations attribute) NONLINEAR (tvb.analyzers.fmri_balloon.BoldModels attribute) norm_source (tvb.datatypes.mode_decompositions.IndependentComponents attribute) (tvb.datatypes.mode_decompositions.PrincipalComponents attribute) normalisation (tvb.adapters.analyzers.wavelet_adapter.WaveletAdapterModel attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) normalised_average_power (tvb.datatypes.spectral.FourierSpectrum attribute) normalised_component_time_series (tvb.datatypes.mode_decompositions.IndependentComponents attribute) (tvb.datatypes.mode_decompositions.PrincipalComponents attribute) normalization (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporterModel attribute) normalize_neural_input (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) normalize_sensors() (tvb.adapters.visualizers.topographic.TopographyCalculations static method) NORMALS_FILE (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) NORMALS_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) NotAllowed NotAuthenticated npat (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) NpBackend (class in tvb.simulator.backend.np) nr_dimensions (tvb.datatypes.time_series.TimeSeries property) nsig (tvb.simulator.noise.Additive attribute) (tvb.simulator.noise.Multiplicative attribute) ntau (tvb.simulator.noise.Noise attribute) nth_ring() (tvb.datatypes.surfaces.Surface method) nu (tvb.simulator.models.stefanescu_jirsa.ReducedSetBase attribute) nu_0 (tvb.analyzers.fmri_balloon.BalloonModel attribute) nu_max (tvb.simulator.models.jansen_rit.JansenRit attribute) nullcline() (in module tvb.adapters.visualizers.phase_plane_interactive) number_of_connections (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.datatypes.connectivity.Connectivity attribute) number_of_edges (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.surfaces.Surface property) number_of_modes (tvb.simulator.models.base.Model attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetBase attribute) number_of_nodes (tvb.simulator.simulator.Simulator attribute) number_of_regions (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.datatypes.connectivity.Connectivity attribute) number_of_scales (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) number_of_sensors (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.datatypes.sensors.Sensors attribute) number_of_triangles (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.surfaces.Surface attribute) number_of_vertices (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.surfaces.Surface attribute) numexpr (tvb.simulator.backend.ref.RefBase attribute) numpy_add_at() (in module tvb.simulator.common) (in module tvb.simulator.monitors) nv (tvb.simulator.models.stefanescu_jirsa.ReducedSetBase attribute) nvar (tvb.simulator.models.base.Model property)

O

ObjParser (class in tvb.adapters.uploaders.obj.parser) ObjSurface (class in tvb.adapters.uploaders.obj.surface) ObjSurfaceImporter (class in tvb.adapters.uploaders.obj_importer) ObjSurfaceImporterForm (class in tvb.adapters.uploaders.obj_importer) ObjSurfaceImporterModel (class in tvb.adapters.uploaders.obj_importer) ObjWriter (class in tvb.adapters.uploaders.obj.parser) obsnoise (tvb.simulator.monitors.Projection attribute) omega (tvb.rateML.generatedModels.kuramoto.KuramotoT attribute) (tvb.simulator.models.oscillator.Kuramoto attribute) (tvb.simulator.models.oscillator.SupHopf attribute) one_based (tvb.adapters.uploaders.nifti_importer.NIFTIImporterModel attribute) ONE_HUNDRED (tvb.adapters.creators.allen_creator.ResolutionOptionsEnum attribute) ONLINE_HELP_ACTIVE (tvb.core.entities.model.model_project.UserPreferences attribute) open_browser() (tvb.interfaces.rest.client.tvb_client.TVBClient static method) open_session() (tvb.core.entities.storage.session_maker.SessionsStack method) open_tvb_zip() (tvb.storage.storage_interface.StorageInterface method) Operation (class in tvb.core.entities.model.model_operation) operation (tvb.core.entities.filters.chain.FilterChain attribute) (tvb.core.entities.model.model_operation.OperationProcessIdentifier attribute) Operation2ImportData (class in tvb.core.services.import_service) OPERATION_FOLDER_PREFIX (tvb.storage.storage_interface.StorageInterface attribute) OPERATION_GID (tvb.interfaces.rest.commons.strings.LinkPlaceholder attribute) operation_group (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_operation.Operation attribute) operation_group_gid (tvb.core.neotraits.view_model.ViewModel attribute) operation_info_for_burst_removal (tvb.core.entities.model.model_burst.BurstConfiguration property) operation_replacement (tvb.core.entities.filters.chain.FilterChain attribute) OPERATION_RESULTS (tvb.interfaces.rest.commons.strings.RestLink attribute) OPERATION_STATUS (tvb.interfaces.rest.commons.strings.RestLink attribute) operation_tag (tvb.core.entities.generic_attributes.GenericAttributes attribute) OperationAccessPermission (class in tvb.interfaces.rest.server.access_permissions.permissions) OperationDAO (class in tvb.core.entities.storage.operation_dao) OperationDto (class in tvb.interfaces.rest.commons.dtos) OperationException OperationExecutor (class in tvb.core.services.backend_clients.standalone_client) OperationFacade (class in tvb.interfaces.rest.server.facades.operation_facade) OperationGroup (class in tvb.core.entities.model.model_operation) OperationOverlayDetails (class in tvb.core.entities.transient.context_overlay) OperationProcessIdentifier (class in tvb.core.entities.model.model_operation) OPERATIONS (tvb.interfaces.rest.commons.strings.RestNamespace attribute)

operations_canceled (tvb.core.entities.model.model_project.Project attribute) operations_error (tvb.core.entities.model.model_project.Project attribute) operations_finished (tvb.core.entities.model.model_project.Project attribute) OPERATIONS_IN_PROJECT (tvb.interfaces.rest.commons.strings.RestLink attribute) operations_pending (tvb.core.entities.model.model_project.Project attribute) operations_started (tvb.core.entities.model.model_project.Project attribute) OperationService (class in tvb.core.services.operation_service) OPERATORS (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) Option (class in tvb.core.neotraits.forms) OPTIONS (tvb.adapters.uploaders.sensors_importer.SensorsImporterModel attribute) options() (tvb.core.neotraits.forms.DynamicSelectField method) (tvb.core.neotraits.forms.MultiSelectField method) (tvb.core.neotraits.forms.SelectField method) (tvb.core.neotraits.forms.TraitDataTypeSelectField method) order_field (tvb.core.services.import_service.Operation2ImportData property) order_nr (tvb.config.algorithm_categories.AlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.AnalyzeAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.CreateAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.SimulateAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.UploadAlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.ViewAlgorithmCategoryConfig attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) ordered_centres (tvb.datatypes.connectivity.Connectivity property) ordered_labels (tvb.datatypes.connectivity.Connectivity property) ordered_tracts (tvb.datatypes.connectivity.Connectivity property) ordered_weights (tvb.datatypes.connectivity.Connectivity property) ORIENTATION_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) orientations (tvb.datatypes.connectivity.Connectivity attribute) (tvb.datatypes.sensors.Sensors attribute) (tvb.datatypes.sensors.SensorsMEG attribute) oriented_gain() (tvb.simulator.monitors.Projection static method) origin (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.datatypes.volumes.Volume attribute) original_connectivity (tvb.adapters.creators.connectivity_creator.ConnectivityCreatorModel attribute) OscillatorT (class in tvb.rateML.generatedModels.oscillator) OTHER_COLOR (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) out_of_range() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesRegionH5 static method) OUTPUT_FOLDER (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) outputlist (tvb.core.entities.model.model_operation.Algorithm attribute) OverlayTabDefinition (class in tvb.interfaces.web.entities.context_overlay) own_declarative_attrs (tvb.basic.neotraits._declarative_base.MetaType property)

P

P (tvb.simulator.coupling.PreSigmoidal attribute) (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) p_i (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) p_max (tvb.simulator.models.jansen_rit.JansenRit attribute) p_min (tvb.simulator.models.jansen_rit.JansenRit attribute) PAGE_NUMBER (tvb.interfaces.rest.commons.strings.Strings attribute) PAGE_SIZE (tvb.adapters.visualizers.brain.BrainViewer attribute) page_size (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) parameter_name (tvb.core.entities.model.model_operation.Algorithm attribute) parameter_names (tvb.simulator.coupling.Linear attribute) (tvb.simulator.coupling.Sigmoidal attribute) (tvb.simulator.models.linear.Linear attribute) ParameterExplorationController (class in tvb.interfaces.web.controllers.burst.exploration_controller) parameters (tvb.datatypes.equations.Alpha attribute) (tvb.datatypes.equations.Cosine attribute) (tvb.datatypes.equations.DoubleExponential attribute) (tvb.datatypes.equations.DoubleGaussian attribute) (tvb.datatypes.equations.Equation attribute) (tvb.datatypes.equations.FirstOrderVolterra attribute) (tvb.datatypes.equations.Gamma attribute) (tvb.datatypes.equations.Gaussian attribute) (tvb.datatypes.equations.GeneralizedSigmoid attribute) (tvb.datatypes.equations.Linear attribute) (tvb.datatypes.equations.MixtureOfGammas attribute) (tvb.datatypes.equations.PulseTrain attribute) (tvb.datatypes.equations.RescaleInterval attribute) (tvb.datatypes.equations.Sigmoid attribute) (tvb.datatypes.equations.Sinusoid attribute) parameters_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) parcellation (tvb.adapters.creators.siibra_creator.SiibraModel attribute) PARCELLATION_OPTS (in module tvb.adapters.creators.siibra_creator) parent_burst (tvb.core.entities.generic_attributes.GenericAttributes attribute) parent_burst_object (tvb.core.entities.model.model_burst.BurstConfiguration attribute) parent_connectivity (tvb.datatypes.connectivity.Connectivity attribute) parent_operation (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) parent_operation_group (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) parents_and_grandparents_finder() (in module tvb.adapters.creators.allen_creator) parse() (tvb.adapters.uploaders.gifti.parser.GIFTIParser method) (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser method) (tvb.adapters.uploaders.nifti.parser.NIFTIParser method) parse_args() (tvb.rateML.run.model_driver.Driver_Setup method) (tvb.rateML.run.model_driver_bold.Driver_Setup method) (tvb.rateML.run.model_driver_zerlaut.Driver_Setup method) (tvb.rateML.XML2model.RateML method) parse_config_file() (in module tvb.interfaces.web.run_landing_page) parse_f() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_json_parameters() (in module tvb.core.utils) parse_pse_data_for_display() (tvb.adapters.visualizers.pse.PSEGroupModel method) (tvb.adapters.visualizers.pse_isocline.PSEIsoGroupModel method) parse_revision_number() (tvb.basic.config.settings.VersionSettings static method) parse_shape() (tvb.core.neotraits._h5accessors.SparseMatrixMetaData static method) parse_slice() (in module tvb.core.adapters.arguments_serialisation) parse_subject_ids() (in module tvb.adapters.creators.siibra_base) parse_v() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_vn() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_vt() (tvb.adapters.uploaders.obj.parser.ObjParser method) parsed_origin (tvb.adapters.datatypes.db.volume.VolumeIndex property) parsed_shape (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex property) (tvb.core.entities.model.model_datatype.DataTypeMatrix property) parsed_voxel_size (tvb.adapters.datatypes.db.volume.VolumeIndex property) ParseException ParticipationCoefficient (class in tvb.adapters.analyzers.bct_centrality_adapters) ParticipationCoefficientSign (class in tvb.adapters.analyzers.bct_centrality_adapters) password (tvb.core.entities.model.model_project.User attribute) path2url_part() (in module tvb.core.utils) path_by_dir() (in module tvb.core.neocom.h5) (tvb.core.neocom._h5loader.TVBLoader method) (tvb.storage.storage_interface.StorageInterface method) path_for() (in module tvb.core.neocom.h5) (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCTimeseriesMetricsAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.neocom._h5loader.DirLoader method) (tvb.core.neocom._h5loader.TVBLoader method) (tvb.storage.storage_interface.StorageInterface method) path_for_has_traits() (tvb.core.neocom._h5loader.DirLoader method) path_for_stored_index() (in module tvb.core.neocom.h5) (tvb.core.neocom._h5loader.TVBLoader method) paths2url() (tvb.core.adapters.abcdisplayer.URLGenerator static method) PCA (class in tvb.adapters.visualizers.pca) pca (tvb.adapters.visualizers.pca.PCAModel attribute) PCAAdapter (class in tvb.adapters.analyzers.pca_adapter) PCAAdapterForm (class in tvb.adapters.analyzers.pca_adapter) PCAAdapterModel (class in tvb.adapters.analyzers.pca_adapter) PCAForm (class in tvb.adapters.visualizers.pca) PCAModel (class in tvb.adapters.visualizers.pca) PEARSON_MAX (tvb.datatypes.graph.CorrelationCoefficients attribute) PEARSON_MIN (tvb.datatypes.graph.CorrelationCoefficients attribute) PearsonCorrelationCoefficientAdapter (class in tvb.adapters.analyzers.cross_correlation_adapter) PearsonCorrelationCoefficientAdapterForm (class in tvb.adapters.analyzers.cross_correlation_adapter) PearsonCorrelationCoefficientAdapterModel (class in tvb.adapters.analyzers.cross_correlation_adapter) PearsonCorrelationCoefficientVisualizer (class in tvb.adapters.visualizers.pearson_cross_correlation) PearsonCorrelationCoefficientVisualizerForm (class in tvb.adapters.visualizers.pearson_cross_correlation) PearsonCorrelationCoefficientVisualizerModel (class in tvb.adapters.visualizers.pearson_cross_correlation) PearsonEdgeBundle (class in tvb.adapters.visualizers.pearson_edge_bundle) period (tvb.simulator.monitors.Bold attribute) (tvb.simulator.monitors.Monitor attribute) (tvb.simulator.monitors.Raw attribute) permutation (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityParser attribute) persist_operation_state() (tvb.core.services.burst_service.BurstService method) phase (tvb.datatypes.spectral.FourierSpectrum attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) phase_space_d3() (in module tvb.adapters.visualizers.phase_plane_interactive) PhaseLineD3 (class in tvb.adapters.visualizers.phase_plane_interactive) PhasePlane (class in tvb.adapters.visualizers.phase_plane_interactive) PhasePlaneD3 (class in tvb.adapters.visualizers.phase_plane_interactive) phi (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) pid (tvb.core.entities.model.model_operation.OperationProcessIdentifier attribute) plot_output() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) pms_cleaner() (in module tvb.adapters.creators.allen_creator) point2json() (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method) pop_message_from_session() (in module tvb.interfaces.web.controllers.common) populate_burst_disk_usage() (tvb.core.services.burst_service.BurstService static method) populate_datatypes_registry() (in module tvb.config.init.datatypes_registry) populate_from() (tvb.core.entities.file.simulator.simulation_history_h5.SimulationHistory method) populate_surface_fields() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) PortValidator (class in tvb.interfaces.web.controllers.settings_controller) post() (tvb.simulator.coupling.Coupling method) (tvb.simulator.coupling.Difference method) (tvb.simulator.coupling.Kuramoto method) (tvb.simulator.coupling.Linear method) (tvb.simulator.coupling.Scaling method) (tvb.simulator.coupling.Sigmoidal method) (tvb.simulator.coupling.SigmoidalJansenRit method)

post_expr (tvb.simulator.coupling.Linear attribute) (tvb.simulator.coupling.Sigmoidal attribute) postprocess_voxel_ts() (in module tvb.core.adapters.arguments_serialisation) power (tvb.datatypes.spectral.FourierSpectrum attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) pp_bound() (tvb.rateML.XML2model.RateML method) pp_cplist() (tvb.rateML.XML2model.RateML method) pp_noise() (tvb.rateML.XML2model.RateML method) pre() (tvb.simulator.coupling.Coupling method) (tvb.simulator.coupling.Difference method) (tvb.simulator.coupling.HyperbolicTangent method) (tvb.simulator.coupling.Kuramoto method) (tvb.simulator.coupling.SigmoidalJansenRit method) pre_expr (tvb.simulator.coupling.Linear attribute) (tvb.simulator.coupling.Sigmoidal attribute) pre_validators (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.KeycloakLoginForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) preconfigure() (tvb.simulator.simulator.Simulator method) preferences (tvb.core.entities.model.model_project.User attribute) PREFIX_ID_LEAF (tvb.core.entities.transient.structure_entities.StructureNode attribute) PREFIX_ID_NODE (tvb.core.entities.transient.structure_entities.StructureNode attribute) PREFIX_ID_PROJECT (tvb.core.entities.transient.structure_entities.StructureNode attribute) PREFIX_LEFT (tvb.adapters.uploaders.brco.parser.XMLParser attribute) PREFIX_RIGHT (tvb.adapters.uploaders.brco.parser.XMLParser attribute) PREFIX_TVB_ID (tvb.adapters.uploaders.brco.parser.XMLParser attribute) prepare_adapter() (tvb.core.services.algorithm_service.AlgorithmService method) prepare_adapter_form() (tvb.core.services.algorithm_service.AlgorithmService method) prepare_array_shape_meta() (in module tvb.core.neotraits.db) prepare_burst_for_pse() (tvb.core.services.burst_service.BurstService static method) prepare_cortex_fragment() (tvb.adapters.forms.simulator_fragments.SimulatorRMFragment static method) prepare_data_for_burst_copy() (tvb.core.services.burst_service.BurstService method) prepare_datatypes_for_export() (tvb.adapters.exporters.abcexporter.ABCExporter static method) prepare_display_data() (tvb.adapters.visualizers.pse.PSEDiscreteGroupModel method) prepare_encryption() (tvb.storage.storage_interface.StorageInterface method) prepare_final_fragment() (tvb.adapters.forms.simulator_fragments.SimulatorFinalFragment static method) prepare_first_fragment() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) prepare_for_operation_mode() (tvb.basic.config.profile_settings.BaseSettingsProfile method) prepare_group_launch() (tvb.interfaces.web.controllers.flow_controller.FlowController method) prepare_html() (in module tvb.basic.neotraits.info) prepare_index_for_metric_result() (tvb.core.services.burst_service.BurstService method) prepare_indexes_for_simulation_results() (tvb.core.services.burst_service.BurstService method) prepare_individual_jsons() (tvb.adapters.visualizers.pse.DiscretePSE method) prepare_local_coupling() (tvb.datatypes.cortex.Cortex method) prepare_mapped_sensors_as_measure_points_params() (in module tvb.adapters.visualizers.sensors) prepare_metadata() (tvb.core.services.operation_service.OperationService static method) prepare_metrics_operation() (tvb.core.services.burst_service.BurstService static method) prepare_monitor_fragment() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler static method) prepare_monitor_legend() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler static method) prepare_next_fragment_after_noise() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler method) prepare_next_fragment_after_surface() (tvb.adapters.forms.simulator_fragments.SimulatorSurfaceFragment static method) prepare_node_data() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter static method) prepare_node_info() (tvb.adapters.visualizers.pse.PSEModel method) prepare_operation() (tvb.core.services.operation_service.OperationService method) prepare_parameters() (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method) prepare_sensors_as_measure_points_params() (in module tvb.adapters.visualizers.sensors) prepare_shell_surface_params() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) prepare_simulation_name() (tvb.core.services.burst_service.BurstService static method) prepare_simulation_on_server() (tvb.core.services.simulator_service.SimulatorService method) prepare_slices() (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) prepare_stimuli_surface_from_view_model() (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) prepare_stimulus_fragment() (tvb.adapters.forms.simulator_fragments.SimulatorStimulusFragment static method) prepare_time_slice() (in module tvb.core.utils) preprocess_space_parameters() (in module tvb.core.adapters.arguments_serialisation) preprocess_time_parameters() (in module tvb.core.adapters.arguments_serialisation) PreSigmoidal (class in tvb.simulator.coupling) PRESIGMOIDAL (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) PreSigmoidalCouplingForm (class in tvb.adapters.forms.coupling_forms) preview_page_size (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) prewhitening_matrix (tvb.datatypes.mode_decompositions.IndependentComponents attribute) PrincipalComponents (class in tvb.datatypes.mode_decompositions) PrincipalComponentsH5 (class in tvb.adapters.datatypes.h5.mode_decompositions_h5) PrincipalComponentsIndex (class in tvb.adapters.datatypes.db.mode_decompositions) PRIVATE_KEY_NAME (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler attribute) process_queued_operations() (tvb.core.services.backend_clients.standalone_client.StandAloneClient static method) process_time (tvb.core.entities.model.model_burst.BurstConfiguration property) profile() (tvb.interfaces.web.controllers.users_controller.UserController method) profile_func() (in module tvb.interfaces.web.controllers.decorators) ProgressLogger (class in tvb.simulator.monitors) Project (class in tvb.core.entities.model.model_project) project (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) (tvb.core.entities.model.model_operation.ResultFigure attribute) (tvb.interfaces.web.entities.context_simulator.SimulatorContext property) PROJECT_GID (tvb.interfaces.rest.commons.strings.LinkPlaceholder attribute) PROJECT_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) project_key_path() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler static method) PROJECT_MEMBERS (tvb.interfaces.rest.commons.strings.RestLink attribute) PROJECT_STRUCTURE_GROUPING (tvb.core.entities.model.model_project.UserPreferences attribute) PROJECT_VERSION (tvb.basic.config.settings.VersionSettings attribute) ProjectAccessPermission (class in tvb.interfaces.rest.server.access_permissions.permissions) ProjectController (class in tvb.interfaces.web.controllers.project.project_controller) ProjectDto (class in tvb.interfaces.rest.commons.dtos) ProjectFacade (class in tvb.interfaces.rest.server.facades.project_facade) Projection (class in tvb.simulator.monitors) projection (tvb.core.entities.file.simulator.view_model.EEGViewModel attribute) (tvb.core.entities.file.simulator.view_model.iEEGViewModel attribute) (tvb.core.entities.file.simulator.view_model.MEGViewModel attribute) (tvb.simulator.monitors.EEG attribute) (tvb.simulator.monitors.iEEG attribute) (tvb.simulator.monitors.MEG attribute) projection_class() (tvb.simulator.monitors.Projection class method) projection_data (tvb.datatypes.projections.ProjectionMatrix attribute) PROJECTION_DENSITY (tvb.adapters.creators.allen_creator.WeightsOptionsEnum attribute) PROJECTION_DENSITY_INJECTION_DENSITY (tvb.adapters.creators.allen_creator.WeightsOptionsEnum attribute) PROJECTION_ENERGY (tvb.adapters.creators.allen_creator.WeightsOptionsEnum attribute) projection_file (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixImporterModel attribute) projection_surface (tvb.adapters.visualizers.brain.DualBrainViewerModel attribute) (tvb.adapters.visualizers.sensors.SensorsViewerModel attribute) projection_type (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.datatypes.projections.ProjectionMatrix attribute) (tvb.datatypes.projections.ProjectionSurfaceEEG attribute) (tvb.datatypes.projections.ProjectionSurfaceMEG attribute) (tvb.datatypes.projections.ProjectionSurfaceSEEG attribute) ProjectionMatrix (class in tvb.datatypes.projections) ProjectionMatrixH5 (class in tvb.adapters.datatypes.h5.projections_h5) ProjectionMatrixImporterForm (class in tvb.adapters.uploaders.projection_matrix_importer) ProjectionMatrixImporterModel (class in tvb.adapters.uploaders.projection_matrix_importer) ProjectionMatrixIndex (class in tvb.adapters.datatypes.db.projections) ProjectionMatrixSurfaceEEGImporter (class in tvb.adapters.uploaders.projection_matrix_importer) ProjectionMonitorForm (class in tvb.adapters.forms.monitor_forms) ProjectionsTypeEnum (class in tvb.datatypes.projections) ProjectionSurfaceEEG (class in tvb.datatypes.projections) ProjectionSurfaceMEG (class in tvb.datatypes.projections) ProjectionSurfaceSEEG (class in tvb.datatypes.projections) ProjectionViewModel (class in tvb.core.entities.file.simulator.view_model) PROJECTS (tvb.interfaces.rest.commons.strings.RestLink attribute) (tvb.interfaces.rest.commons.strings.RestNamespace attribute) PROJECTS_FOLDER (tvb.storage.h5.file.files_helper.FilesHelper attribute) (tvb.storage.storage_interface.StorageInterface attribute) PROJECTS_PAGE_SIZE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) ProjectService (class in tvb.core.services.project_service) ProjectServiceException ProjectUpdateManager (class in tvb.core.project_versions.project_update_manager) projectupload() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) PRROJECTS_FOR_LINK_KEY (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) PRROJECTS_LINKED_KEY (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) pse_error() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) PSEDiscreteGroupModel (class in tvb.adapters.visualizers.pse) PSEGroupModel (class in tvb.adapters.visualizers.pse) PSEIsoGroupModel (class in tvb.adapters.visualizers.pse_isocline) PSEModel (class in tvb.adapters.visualizers.pse) PUBLIC_KEY_NAME (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler attribute) PulseTrain (class in tvb.datatypes.equations) PULSETRAIN (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) PulseTrainEquationForm (class in tvb.adapters.forms.equation_forms) push_folder_to_sync() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) pytestmark (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder attribute) PYTHON_FOLDER (tvb.basic.config.environment.Environment attribute) PYTHON_INTERPRETER_PATH (tvb.basic.config.profile_settings.BaseSettingsProfile property)

Q

Q (tvb.simulator.coupling.PreSigmoidal attribute) (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) q_ratio (tvb.adapters.analyzers.wavelet_adapter.WaveletAdapterModel attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) query() (tvb.simulator.history.BaseHistory method) (tvb.simulator.history.DenseHistory method) (tvb.simulator.history.SparseHistory method)

query_sparse() (tvb.simulator.history.SparseHistory method) queue_elements_count (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) queue_full (tvb.core.entities.model.model_operation.Operation attribute) QUEUED (tvb.core.services.backend_clients.hpc_scheduler_client.HPCJobStatus attribute) quick_launch_operation() (tvb.interfaces.rest.client.tvb_client.TVBClient method) QV_max (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) QZ_max (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute)

R

r (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.coupling.SigmoidalJansenRit attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) r_0 (tvb.analyzers.fmri_balloon.BalloonModel attribute) r_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) r_i (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) random_stream (tvb.simulator.noise.Noise attribute) Range (class in tvb.basic.neotraits._attr) (class in tvb.basic.neotraits.api) range1 (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) range1_values (tvb.adapters.visualizers.pse.PSEGroupModel property) range2 (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_operation.OperationGroup attribute) range2_values (tvb.adapters.visualizers.pse.PSEGroupModel property) range3 (tvb.core.entities.model.model_operation.OperationGroup attribute) range_references (tvb.core.entities.model.model_operation.OperationGroup property) range_values (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.neotraits.view_model.ViewModel attribute) RangeForm (class in tvb.adapters.analyzers.wavelet_adapter) RangeParameter (class in tvb.core.entities.transient.range_parameter) RangeParametersCollector (class in tvb.adapters.simulator.range_parameters) ranges (tvb.core.entities.model.model_burst.BurstConfiguration property) (tvb.core.neotraits.view_model.ViewModel attribute) RateML (class in tvb.rateML.XML2model) Raw (class in tvb.simulator.monitors) rawinput (tvb.config.algorithm_categories.AlgorithmCategoryConfig attribute) (tvb.config.algorithm_categories.UploadAlgorithmCategoryConfig attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) RawViewModel (class in tvb.core.entities.file.simulator.view_model) RawVoi (class in tvb.simulator.monitors) rays (tvb.adapters.visualizers.connectivity.ConnectivityViewerModel attribute) RBM (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) read() (tvb.adapters.uploaders.obj.parser.ObjParser method) read_annotation_terms() (tvb.adapters.uploaders.brco.parser.XMLParser method) read_array() (tvb.basic.readers.FileReader method) read_array_from_file() (tvb.basic.readers.ZipReader method) read_binary_datatype_attribute() (tvb.interfaces.web.controllers.flow_controller.FlowController method) read_channels_page() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) read_data_page() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) read_data_page_split() (tvb.adapters.visualizers.brain.BrainViewer method) read_data_shape() (tvb.adapters.datatypes.h5.region_mapping_h5.RegionVolumeMappingH5 method) (tvb.adapters.datatypes.h5.temporal_correlations_h5.CrossCorrelationH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) read_data_slice() (tvb.adapters.datatypes.h5.region_mapping_h5.RegionVolumeMappingH5 method) (tvb.adapters.datatypes.h5.temporal_correlations_h5.CrossCorrelationH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) read_datatype_attribute() (tvb.interfaces.web.controllers.flow_controller.FlowController method) read_field() (tvb.basic.readers.H5Reader method) read_fractions_data() (tvb.adapters.datatypes.h5.mode_decompositions_h5.PrincipalComponentsH5 method) read_from_h5_file() (tvb.interfaces.web.controllers.flow_controller.FlowController method) read_gain_from_brainstorm() (tvb.basic.readers.FileReader method) read_h5() (in module tvb.interfaces.command.demos.datatypes.read_from_h5) read_list_data() (tvb.core.adapters.abcuploader.ABCUploader static method) read_matlab_data() (tvb.core.adapters.abcuploader.ABCUploader static method) read_metadata_from_xml() (tvb.storage.h5.file.xml_metadata_handlers.XMLReader method) (tvb.storage.storage_interface.StorageInterface method) read_nested_mat_file() (in module tvb.adapters.uploaders.mat.parser) read_nested_mat_structure() (in module tvb.adapters.uploaders.mat.parser) read_only (tvb.simulator.descriptors.NDArray attribute) read_optional_array_from_file() (tvb.basic.readers.ZipReader method) read_optional_field() (tvb.basic.readers.H5Reader method) read_project_metadata() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface method) read_subtype_attr() (tvb.adapters.datatypes.h5.projections_h5.ProjectionMatrixH5 method) (tvb.adapters.datatypes.h5.sensors_h5.SensorsH5 method) (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) read_time_page() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) read_weights_data() (tvb.adapters.datatypes.h5.mode_decompositions_h5.PrincipalComponentsH5 method) ReaderException readjsonstructure() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) readserverstaticfile() (tvb.interfaces.web.controllers.flow_controller.FlowController method) READY (tvb.core.services.backend_clients.hpc_scheduler_client.HPCJobStatus attribute) reconfigure_boundaries_and_clamping_for_integration_state_variables() (tvb.simulator.integrators.Integrator method) record() (tvb.simulator.monitors.Monitor method) (tvb.simulator.monitors.ProgressLogger method) recoverpassword() (tvb.interfaces.web.controllers.users_controller.UserController method) RecoveryForm (class in tvb.interfaces.web.controllers.users_controller) redirect() (tvb.interfaces.web.controllers.base_controller.BaseController method) REDIRECT_URI (tvb.interfaces.rest.commons.strings.FormKeyInput attribute) RedirectOption (class in tvb.interfaces.web.run_landing_page) REDUCED_SET_FITZ_HUGH_NAGUMO (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) REDUCED_SET_HINDMARSH_ROSE (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) REDUCED_WONG_WANG (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) REDUCED_WONG_WANG_EXC_INH (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) ReducedSetBase (class in tvb.simulator.models.stefanescu_jirsa) ReducedSetFitzHughNagumo (class in tvb.simulator.models.stefanescu_jirsa) ReducedSetFitzHughNagumoModelForm (class in tvb.adapters.forms.model_forms) ReducedSetHindmarshRose (class in tvb.simulator.models.stefanescu_jirsa) ReducedSetHindmarshRoseModelForm (class in tvb.adapters.forms.model_forms) ReducedWongWang (class in tvb.simulator.models.wong_wang) ReducedWongWangExcInhModelForm (class in tvb.adapters.forms.model_forms) ReducedWongWangModelForm (class in tvb.adapters.forms.model_forms) RefBase (class in tvb.simulator.backend.ref) Reference (class in tvb.core.neotraits._h5accessors) (class in tvb.core.neotraits.h5) reference (tvb.simulator.monitors.EEG attribute) ReferenceBackend (class in tvb.simulator.backend.ref) referenced_datatype (tvb.core.entities.model.model_datatype.Links attribute) referenced_project (tvb.core.entities.model.model_datatype.Links attribute) ReferenceList (class in tvb.core.neotraits._h5accessors) refresh_subform() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.flow_controller.FlowController method) refresh_update_date() (tvb.core.entities.model.model_project.Project method) RefSurface (class in tvb.simulator.backend.ref) region_annotations (tvb.adapters.datatypes.h5.annotation_h5.ConnectivityAnnotations attribute) REGION_CORTICAL (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) region_labels (tvb.datatypes.connectivity.Connectivity attribute) region_map (tvb.adapters.visualizers.surface_view.BaseSurfaceViewerModel attribute) region_mapping (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.core.entities.file.simulator.view_model.ProjectionViewModel attribute) (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.time_series.TimeSeriesRegion attribute) REGION_MAPPING (tvb.simulator.monitors.DefaultMasks attribute) region_mapping (tvb.simulator.monitors.Projection attribute) region_mapping_data (tvb.core.entities.file.simulator.view_model.CortexViewModel attribute) (tvb.datatypes.cortex.Cortex attribute) region_mapping_index (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsViewModel attribute) region_mapping_volume (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizerModel attribute) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiserModel attribute) (tvb.adapters.visualizers.region_volume_mapping.VolumeVisualizerModel attribute) (tvb.datatypes.time_series.TimeSeriesRegion attribute) region_volume (tvb.adapters.uploaders.tract_importer.TrackImporterModel attribute) region_volume_map (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.datatypes.tracts.Tracts attribute) RegionMapping (class in tvb.datatypes.region_mapping) RegionMappingH5 (class in tvb.adapters.datatypes.h5.region_mapping_h5) RegionMappingImporter (class in tvb.adapters.uploaders.region_mapping_importer) RegionMappingImporterForm (class in tvb.adapters.uploaders.region_mapping_importer) RegionMappingImporterModel (class in tvb.adapters.uploaders.region_mapping_importer) RegionMappingIndex (class in tvb.adapters.datatypes.db.region_mapping) RegionMappingViewer (class in tvb.adapters.visualizers.surface_view) RegionMappingViewerForm (class in tvb.adapters.visualizers.surface_view) RegionMatTimeSeriesImporterForm (class in tvb.adapters.uploaders.mat_timeseries_importer) RegionMatTimeSeriesImporterModel (class in tvb.adapters.uploaders.mat_timeseries_importer) RegionsModelParametersController (class in tvb.interfaces.web.controllers.burst.region_model_parameters_controller) RegionStimulusController (class in tvb.interfaces.web.controllers.spatial.region_stimulus_controller) RegionStimulusCreator (class in tvb.adapters.creators.stimulus_creator) RegionStimulusCreatorForm (class in tvb.adapters.creators.stimulus_creator) RegionStimulusCreatorModel (class in tvb.adapters.creators.stimulus_creator) RegionTimeSeriesImporter (class in tvb.adapters.uploaders.mat_timeseries_importer)

RegionVolumeMapping (class in tvb.datatypes.region_mapping) RegionVolumeMappingH5 (class in tvb.adapters.datatypes.h5.region_mapping_h5) RegionVolumeMappingIndex (class in tvb.adapters.datatypes.db.region_mapping) RegionVolumeMappingVisualiser (class in tvb.adapters.visualizers.region_volume_mapping) RegionVolumeMappingVisualiserForm (class in tvb.adapters.visualizers.region_volume_mapping) RegionVolumeMappingVisualiserModel (class in tvb.adapters.visualizers.region_volume_mapping) register() (tvb.interfaces.web.controllers.users_controller.UserController method) register_datatype() (tvb.core.neocom._registry.Registry method) REGISTERED_PROFILES (tvb.basic.profile.TvbProfile attribute) RegisterForm (class in tvb.interfaces.web.controllers.users_controller) Registry (class in tvb.core.neocom._registry) regularRun (class in tvb.rateML.run.regular_run) release_gpumem() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) RELEVANT_VIEW (tvb.core.entities.filters.factory.StaticFiltersFactory attribute) reload_burst_operation() (tvb.interfaces.web.controllers.flow_controller.FlowController method) reload_default() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) reloadoperation() (tvb.interfaces.web.controllers.flow_controller.FlowController method) remove_burst_config_from_session() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) remove_burst_configuration() (tvb.core.services.burst_service.BurstService static method) remove_data() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) remove_datatype() (tvb.core.adapters.abcremover.ABCRemover method) (tvb.core.entities.storage.root_dao.RootDAO method) (tvb.core.services.project_service.ProjectService method) remove_entity() (tvb.core.entities.storage.root_dao.RootDAO method) remove_figure() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) remove_files() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface static method) remove_focal_point() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) remove_folder() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface static method) remove_from_session() (in module tvb.interfaces.web.controllers.common) remove_link() (tvb.core.services.algorithm_service.AlgorithmService static method) remove_mean() (in module tvb.analyzers.metric_proxy_metastability) remove_member_from_project() (tvb.core.services.project_service.ProjectService method) remove_metadata() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) remove_operation() (tvb.core.services.project_service.ProjectService method) remove_operation_data() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) remove_project() (tvb.core.services.project_service.ProjectService method) (tvb.storage.storage_interface.StorageInterface method) remove_project_from_session() (in module tvb.interfaces.web.controllers.common) remove_result_figure() (tvb.core.services.figure_service.FigureService method) removed (tvb.core.entities.model.model_operation.Algorithm attribute) (tvb.core.entities.model.model_operation.AlgorithmCategory attribute) RemoveDataTypeException removelink() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) rename_burst() (tvb.core.services.burst_service.BurstService method) (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) rename_project() (tvb.storage.storage_interface.StorageInterface method) rename_project_structure() (tvb.storage.h5.file.files_helper.FilesHelper method) RenameWhileSyncEncryptingException render() (tvb.rateML.XML2model.RateML method) render_adapter_form() (tvb.interfaces.web.controllers.base_controller.BaseController method) render_driver() (tvb.rateML.XML2model.RateML method) RENDER_HTML (tvb.basic.config.settings.WebSettings attribute) render_model() (tvb.rateML.XML2model.RateML method) render_spatial_form() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) render_template() (tvb.simulator.backend.templates.MakoUtilMix method) replace_nan_values() (in module tvb.core.neotraits.view_model) RequestFileKey (class in tvb.interfaces.rest.commons.strings) RequestHandler (class in tvb.interfaces.web.request_handler) required_datatype (tvb.core.entities.model.model_operation.Algorithm attribute) REQUIRED_TYPE (tvb.core.neotraits.uploader_view_model.UploaderViewModel attribute) RescaleInterval (class in tvb.datatypes.equations) RescaleIntervalEquationForm (class in tvb.adapters.forms.equation_forms) reset() (in module tvb.config.init.initializer) reset_at_connectivity_change() (tvb.core.services.simulator_service.SimulatorService method) reset_at_surface_change() (tvb.core.services.simulator_service.SimulatorService method) reset_database() (in module tvb.config.init.model_manager) reset_equations_for_all_parameters() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) reset_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) reset_param_equation() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) reset_password() (tvb.core.services.user_service.UserService method) reset_random_stream() (tvb.simulator.noise.Noise method) reset_region_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) reset_simulator_configuration() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) resolution (tvb.adapters.creators.allen_creator.AllenConnectModel attribute) ResolutionOptionsEnum (class in tvb.adapters.creators.allen_creator) ResourceAccessPermission (class in tvb.interfaces.rest.server.access_permissions.permissions) RestApi (class in tvb.interfaces.rest.server.rest_api) RestLink (class in tvb.interfaces.rest.commons.strings) RestNamespace (class in tvb.interfaces.rest.commons.strings) RestResource (class in tvb.interfaces.rest.server.resources.rest_resource) result_shape() (tvb.adapters.analyzers.fourier_adapter.FourierAdapter static method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter static method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter static method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter static method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter static method) (tvb.analyzers.fmri_balloon.BalloonModel method) result_size() (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter static method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.analyzers.fmri_balloon.BalloonModel method) ResultFigure (class in tvb.core.entities.model.model_operation) retrieve_all_user_projects() (tvb.core.services.project_service.ProjectService static method) retrieve_datatype() (tvb.interfaces.rest.client.tvb_client.TVBClient method) retrieve_logged_user_projects() (tvb.interfaces.rest.server.facades.project_facade.ProjectFacade static method) retrieve_measure_points_params() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) retrieve_project_full() (tvb.core.services.project_service.ProjectService method) retrieve_projects_for_user() (tvb.core.services.project_service.ProjectService method) retrieve_result_figures() (tvb.core.services.figure_service.FigureService method) retrieve_users_except() (tvb.core.services.user_service.UserService static method) review_operation_inputs_from_adapter() (in module tvb.core.adapters.inputs_processor) REVISION_NUMBER (tvb.basic.config.settings.VersionSettings property) (tvb.config.profile_settings.TestSQLiteProfile attribute) rho_1 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) rho_2 (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) RIGHT_SUFFIX_RE (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) rmap (tvb.simulator.monitors.Projection property) rNMDA (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) role (tvb.core.entities.model.model_project.User attribute) rollback_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method) ROOT_NODE_PATH (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager attribute) (tvb.storage.storage_interface.StorageInterface attribute) RootDAO (class in tvb.core.entities.storage.root_dao) rotate_reference() (in module tvb.adapters.creators.allen_creator) run() (tvb.core.services.backend_clients.standalone_client.OperationExecutor method) (tvb.simulator.simulator.Simulator method) (tvb.storage.h5.encryption.data_encryption_handler.FoldersQueueConsumer method) (tvb.storage.storage_interface.StorageInterface method) run_all() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) run_all_updates() (tvb.core.code_versions.base_classes.UpdateManager method) (tvb.core.code_versions.code_update_manager.CodeUpdateManager method) (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) (tvb.core.project_versions.project_update_manager.ProjectUpdateManager method) run_analyzer() (in module tvb.interfaces.command.demos.operations.run_analyzer) run_export() (in module tvb.interfaces.command.demos.project.project_export) run_import() (in module tvb.interfaces.command.demos.project.project_import) run_sim() (tvb.simulator.backend.nb_mpr.NbMPRBackend method) (tvb.simulator.backend.np.NpBackend method) run_simulation() (in module tvb.interfaces.command.demos.operations.run_simulation) (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) run_update_script() (tvb.core.code_versions.base_classes.UpdateManager method) (tvb.core.code_versions.code_update_manager.CodeUpdateManager method) RUNGE_KUTTA (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) RungeKutta4thOrderDeterministic (class in tvb.simulator.integrators) RungeKutta4thOrderDeterministicViewModel (class in tvb.core.entities.file.simulator.view_model) running_operations (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) runtime() (tvb.simulator.simulator.Simulator method) RwongwangT (class in tvb.rateML.generatedModels.rwongwang)

S

s (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) sampen() (in module tvb.analyzers.info) sample() (tvb.simulator.monitors.AfferentCoupling method) (tvb.simulator.monitors.AfferentCouplingTemporalAverage method) (tvb.simulator.monitors.Bold method) (tvb.simulator.monitors.BoldRegionROI method) (tvb.simulator.monitors.EEG method) (tvb.simulator.monitors.GlobalAverage method) (tvb.simulator.monitors.Monitor method) (tvb.simulator.monitors.ProgressLogger method) (tvb.simulator.monitors.Projection method) (tvb.simulator.monitors.Raw method) (tvb.simulator.monitors.RawVoi method) (tvb.simulator.monitors.SpatialAverage method) (tvb.simulator.monitors.SubSample method) (tvb.simulator.monitors.TemporalAverage method) sample_period (tvb.adapters.analyzers.wavelet_adapter.WaveletAdapterModel attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) (tvb.datatypes.time_series.TimeSeries attribute) sample_period_ms (tvb.datatypes.time_series.TimeSeries property) sample_period_unit (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.datatypes.time_series.TimeSeries attribute) sample_rate (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.datatypes.time_series.TimeSeries property) sampling_rate (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) save_encrypted_password() (tvb.storage.h5.encryption.import_export_encryption_handler.ImportExportEncryptionHandler method) save_file() (in module tvb.interfaces.rest.commons.files_helper) save_measure_points_selection() (tvb.core.services.algorithm_service.AlgorithmService static method) save_project_to_user() (tvb.core.services.user_service.UserService static method) save_pse_filter() (tvb.core.services.algorithm_service.AlgorithmService static method) save_settings() (tvb.core.services.settings_service.SettingsService method) save_temporary_file() (in module tvb.interfaces.rest.commons.files_helper) saved_selection (tvb.datatypes.connectivity.Connectivity attribute) saved_selection_labels (tvb.datatypes.connectivity.Connectivity property) Scalar (class in tvb.core.neotraits._h5accessors) (class in tvb.core.neotraits.h5) scaled_weights() (tvb.datatypes.connectivity.Connectivity method) Scaling (class in tvb.simulator.coupling) SCALING (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) ScalingCouplingForm (class in tvb.adapters.forms.coupling_forms) SCHEDULE_COMMAND (tvb.basic.config.settings.ClusterSettings property) SCHEDULER_OAR (tvb.basic.config.settings.ClusterSettings attribute) SCHEDULER_SLURM (tvb.basic.config.settings.ClusterSettings attribute) scheme() (tvb.simulator.integrators.EulerDeterministic method) (tvb.simulator.integrators.EulerStochastic method) (tvb.simulator.integrators.HeunDeterministic method) (tvb.simulator.integrators.HeunStochastic method) (tvb.simulator.integrators.Identity method) (tvb.simulator.integrators.IdentityStochastic method) (tvb.simulator.integrators.Integrator method) (tvb.simulator.integrators.RungeKutta4thOrderDeterministic method) (tvb.simulator.integrators.SciPyODE method) (tvb.simulator.integrators.SciPySDE method) SciPyODE (class in tvb.simulator.integrators) SciPyODEBase (class in tvb.simulator.integrators) SciPySDE (class in tvb.simulator.integrators) search_and_export_ts() (in module tvb.interfaces.command.demos.datatypes.search_and_export) SECTION_ANALYZE (tvb.interfaces.web.structure.WebStructure attribute) SECTION_BURST (tvb.interfaces.web.structure.WebStructure attribute) SECTION_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute) SECTION_PROJECT (tvb.interfaces.web.structure.WebStructure attribute) SECTION_STIMULUS (tvb.interfaces.web.structure.WebStructure attribute) SECTION_USER (tvb.interfaces.web.structure.WebStructure attribute) secured_request() (tvb.interfaces.rest.client.main_api.MainApi method) SecuredResource (class in tvb.interfaces.rest.server.resources.rest_resource) SEEG (tvb.datatypes.projections.ProjectionsTypeEnum attribute) segment (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterModel attribute) segment_length (tvb.adapters.analyzers.fourier_adapter.FFTAdapterModel attribute) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) (tvb.datatypes.spectral.FourierSpectrum attribute) segment_shift (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) selected_nodes (tvb.core.entities.model.model_datatype.MeasurePointsSelection attribute) selected_project (tvb.core.entities.model.model_project.User attribute) selected_tab (tvb.core.entities.model.model_burst.BurstConfiguration attribute) SelectedAdapterContext (class in tvb.interfaces.web.entities.context_selected_adapter) SelectField (class in tvb.core.neotraits.forms) SELECTION_LIMIT (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesSurfaceH5 attribute) SEMICOLON (tvb.adapters.uploaders.csv_connectivity_importer.CSVDelimiterOptionsEnum attribute) send() (in module tvb.core.services.email_sender) Sensors (class in tvb.datatypes.sensors) sensors (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixImporterModel attribute) (tvb.adapters.visualizers.sensors.SensorsViewerModel attribute) (tvb.core.entities.file.simulator.view_model.EEGViewModel attribute) (tvb.core.entities.file.simulator.view_model.iEEGViewModel attribute) (tvb.core.entities.file.simulator.view_model.MEGViewModel attribute) (tvb.datatypes.projections.ProjectionMatrix attribute) (tvb.datatypes.projections.ProjectionSurfaceEEG attribute) (tvb.datatypes.projections.ProjectionSurfaceMEG attribute) (tvb.datatypes.projections.ProjectionSurfaceSEEG attribute) (tvb.datatypes.time_series.TimeSeriesEEG attribute) (tvb.datatypes.time_series.TimeSeriesMEG attribute) (tvb.datatypes.time_series.TimeSeriesSEEG attribute) (tvb.simulator.monitors.EEG attribute) (tvb.simulator.monitors.iEEG attribute) (tvb.simulator.monitors.MEG attribute) sensors_file (tvb.adapters.uploaders.sensors_importer.SensorsImporterModel attribute) sensors_to_surface() (tvb.adapters.visualizers.brain.DualBrainViewer method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.datatypes.sensors.Sensors method) sensors_type (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.uploaders.sensors_importer.SensorsImporterModel attribute) (tvb.datatypes.sensors.Sensors attribute) (tvb.datatypes.sensors.SensorsEEG attribute) (tvb.datatypes.sensors.SensorsInternal attribute) (tvb.datatypes.sensors.SensorsMEG attribute) SensorsEEG (class in tvb.datatypes.sensors) SensorsH5 (class in tvb.adapters.datatypes.h5.sensors_h5) SensorsImporter (class in tvb.adapters.uploaders.sensors_importer) SensorsImporterForm (class in tvb.adapters.uploaders.sensors_importer) SensorsImporterModel (class in tvb.adapters.uploaders.sensors_importer) SensorsIndex (class in tvb.adapters.datatypes.db.sensors) SensorsInternal (class in tvb.datatypes.sensors) SensorsMEG (class in tvb.datatypes.sensors) SensorsTSBase (class in tvb.datatypes.time_series) SensorsViewer (class in tvb.adapters.visualizers.sensors) SensorsViewerForm (class in tvb.adapters.visualizers.sensors) SensorsViewerModel (class in tvb.adapters.visualizers.sensors) SensorTypesEnum (class in tvb.datatypes.sensors) SEP (tvb.core.entities.transient.structure_entities.StructureNode attribute) sequential_random_deletion() (in module tvb.analyzers.graph) sequential_targeted_deletion() (in module tvb.analyzers.graph) SerializationManager (class in tvb.core.services.burst_config_serialization) serialize_bool() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager static method) ServiceException ServicesBaseException session (tvb.core.entities.storage.burst_dao.BurstDAO attribute) (tvb.core.entities.storage.DAO attribute) (tvb.core.entities.storage.datatype_dao.DatatypeDAO attribute) (tvb.core.entities.storage.operation_dao.OperationDAO attribute) (tvb.core.entities.storage.project_dao.CaseDAO attribute) (tvb.core.entities.storage.root_dao.RootDAO attribute) (tvb.core.entities.storage.workflow_dao.WorkflowDAO attribute) SESSION_KEY (tvb.interfaces.web.controllers.burst.dynamic_model_controller.SessionCache attribute) SESSION_META_CLASS (in module tvb.core.entities.storage.session_maker) session_name (tvb.core.entities.model.model_operation.ResultFigure attribute) SessionCache (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller) SessionMaker() (in module tvb.core.entities.storage.session_maker) SessionsStack (class in tvb.core.entities.storage.session_maker) set_annotations() (tvb.adapters.datatypes.h5.annotation_h5.ConnectivityAnnotations method) set_areas() (tvb.datatypes.connectivity.Connectivity method) set_burst_config() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) set_centres() (tvb.datatypes.connectivity.Connectivity method) set_connectivity() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) set_connectivity_measure() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) SET_CONNECTIVITY_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_cortex() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_CORTEX_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_cortical() (tvb.datatypes.connectivity.Connectivity method) set_coupling_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_COUPLING_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_CUDA_ref_model_dir() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) set_CUDAmodel_dir() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) set_current_user() (in module tvb.interfaces.rest.server.request_helper) set_cutoff_value() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) set_datatype_visibility() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) set_display_name() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) set_driver_location() (tvb.rateML.XML2model.RateML method) set_equation_param() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) set_error_message() (in module tvb.interfaces.web.controllers.common) set_fragment_url() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) set_generated_model_location() (tvb.rateML.XML2model.RateML method) set_hemispheres() (tvb.datatypes.connectivity.Connectivity method) set_idelays() (tvb.datatypes.connectivity.Connectivity method) set_important_message() (in module tvb.interfaces.web.controllers.common) set_info_message() (in module tvb.interfaces.web.controllers.common) set_integrator() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) set_integrator_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_INTEGRATOR_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) SET_INTEGRATOR_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_loggers_level() (in module tvb.basic.logger.builder) (tvb.basic.logger.builder.LoggerBuilder method) set_message() (in module tvb.interfaces.web.controllers.common) set_metadata() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) set_model() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) set_model_parameter() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) set_model_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_MODEL_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) SET_MODEL_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_monitor_equation() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_MONITOR_EQUATION_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_monitor_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_MONITOR_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_monitors() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) set_monitors_list_on_simulator() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler method) SET_MONITORS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_noise_equation_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_NOISE_EQUATION_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_noise_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_NOISE_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_operation_and_group_visibility() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService method) set_orientations() (tvb.datatypes.connectivity.Connectivity method) set_preference() (tvb.core.entities.model.model_project.User method) set_profile() (tvb.basic.profile.TvbProfile class method) set_project_active() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) set_project_inactive() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) set_project_structure_grouping() (tvb.core.entities.model.model_project.User method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) set_pse_params() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_PSE_PARAMS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_random_state() (tvb.simulator.integrators.Integrator method) (tvb.simulator.integrators.IntegratorStochastic method) set_region_labels() (tvb.datatypes.connectivity.Connectivity method) set_scaled_vertices() (tvb.datatypes.surfaces.Surface method) set_simulator() (tvb.interfaces.web.entities.context_simulator.SimulatorContext method) set_spatial_param() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) set_stimulus() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SET_STIMULUS_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_surface() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) SET_SURFACE_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) set_template() (tvb.rateML.XML2model.RateML method) set_temporal_param() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) set_title() (tvb.basic.neotraits._core.HasTraits method) (tvb.basic.neotraits.api.HasTraits method) (tvb.simulator.simulator.Simulator method) set_tract_lengths() (tvb.datatypes.connectivity.Connectivity method) set_transfer_function_param() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) set_viewer_color_scheme() (tvb.interfaces.web.controllers.users_controller.UserController method) set_viewers_color_scheme() (tvb.core.entities.model.model_project.User method) set_visibility() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) set_warning_message() (in module tvb.interfaces.web.controllers.common) (tvb.interfaces.web.entities.context_simulator.SimulatorContext static method) set_weights() (tvb.datatypes.connectivity.Connectivity method) set_XML_model_folder() (tvb.rateML.XML2model.RateML method) setter() (tvb.basic.neotraits._core.TraitProperty method) settings() (in module tvb.interfaces.web.controllers.decorators) (tvb.interfaces.web.controllers.settings_controller.SettingsController method) SettingsController (class in tvb.interfaces.web.controllers.settings_controller) SettingsForm (class in tvb.interfaces.web.controllers.settings_controller) SettingsManager (class in tvb.basic.config.stored) SettingsService (class in tvb.core.services.settings_service) setup() (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) setup_params() (tvb.rateML.run.model_driver.Driver_Setup method) (tvb.rateML.run.model_driver_bold.Driver_Setup method) (tvb.rateML.run.model_driver_zerlaut.Driver_Setup method) setup_pse() (tvb.interfaces.web.controllers.simulator.simulator_controller.SimulatorController method) SETUP_PSE_URL (tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls.SimulatorWizzardURLs attribute) setup_python_path() (tvb.basic.config.environment.Environment method) setup_tk_tcl_environ() (tvb.basic.config.environment.Environment method) shape (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.neotraits._h5accessors.DataSet property) (tvb.core.neotraits.h5.DataSet property) (tvb.datatypes.projections.ProjectionMatrix property) (tvb.datatypes.time_series.TimeSeries property) (tvb.simulator.descriptors.NDArray attribute) shell_surface (tvb.adapters.visualizers.brain.BrainViewerModel attribute) (tvb.adapters.visualizers.brain.DualBrainViewerModel attribute) (tvb.adapters.visualizers.sensors.SensorsViewerModel attribute) (tvb.adapters.visualizers.surface_view.BaseSurfaceViewerModel attribute) (tvb.adapters.visualizers.tract.TractViewerModel attribute) shift_sigmoid (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) should_center (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporterModel attribute) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporterModel attribute) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporterModel attribute) show_confirmation_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) show_group_of_algorithms() (tvb.interfaces.web.controllers.flow_controller.FlowController method) showBlockerOverlay() (tvb.interfaces.web.controllers.base_controller.BaseController method) showOnlineHelp() (tvb.interfaces.web.controllers.help.help_controller.HelpController method) sigma (tvb.simulator.coupling.HyperbolicTangent attribute) (tvb.simulator.coupling.Sigmoidal attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.monitors.EEG attribute) (tvb.simulator.monitors.iEEG attribute) sigma_fun() (tvb.simulator.models.jansen_rit.ZetterbergJansen method) sigma_noise (tvb.simulator.models.wong_wang.ReducedWongWang attribute) Sigmoid (class in tvb.datatypes.equations) SIGMOID (tvb.adapters.forms.equation_forms.SpatialEquationsEnum attribute) (tvb.adapters.forms.equation_forms.SurfaceModelEquationsEnum attribute) (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) (tvb.adapters.forms.surface_model_parameters_form.SurfaceModelEquationsEnum attribute) Sigmoidal (class in tvb.simulator.coupling) SIGMOIDAL (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) SIGMOIDAL_JANSEN_RIT (tvb.adapters.forms.coupling_forms.CouplingFunctionsEnum attribute) SigmoidalCouplingForm (class in tvb.adapters.forms.coupling_forms) SigmoidalJansenRit (class in tvb.simulator.coupling) SigmoidalJansenRitForm (class in tvb.adapters.forms.coupling_forms) SigmoidEquationForm (class in tvb.adapters.forms.equation_forms) SIIBRA_CREATOR_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) SIIBRA_CREATOR_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) SiibraCreator (class in tvb.adapters.creators.siibra_creator) SiibraCreatorForm (class in tvb.adapters.creators.siibra_creator) SiibraModel (class in tvb.adapters.creators.siibra_creator) simple_gen_astr() (in module tvb.simulator.common) SimpleTimedRotatingFileHandler (class in tvb.basic.logger.simple_handler) simulate_python() (tvb.rateML.run.regular_run.regularRun method) SimulateAlgorithmCategoryConfig (class in tvb.config.algorithm_categories) SIMULATION (tvb.interfaces.rest.commons.strings.RestNamespace attribute) SIMULATION_FILE_KEY (tvb.interfaces.rest.commons.strings.RequestFileKey attribute) SIMULATION_FILE_NAME (tvb.interfaces.rest.commons.strings.RequestFileKey attribute) simulation_length (tvb.simulator.simulator.Simulator attribute) SimulationFacade (class in tvb.interfaces.rest.server.facades.simulation_facade) SimulationHistory (class in tvb.core.entities.file.simulator.simulation_history_h5) SimulationHistoryH5 (class in tvb.core.entities.file.simulator.simulation_history_h5) SimulationHistoryIndex (class in tvb.adapters.datatypes.db.simulation_history) Simulator (class in tvb.simulator.simulator) simulator (tvb.interfaces.web.entities.context_simulator.SimulatorContext property) SIMULATOR_CLASS (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) simulator_gid (tvb.core.entities.model.model_burst.BurstConfiguration attribute) SIMULATOR_MODULE (tvb.config.init.introspector_registry.IntrospectionRegistry attribute) SimulatorAdapter (class in tvb.adapters.simulator.simulator_adapter) SimulatorAdapterForm (class in tvb.adapters.simulator.simulator_adapter) SimulatorAdapterModel (class in tvb.core.entities.file.simulator.view_model) SimulatorContext (class in tvb.interfaces.web.entities.context_simulator) SimulatorController (class in tvb.interfaces.web.controllers.simulator.simulator_controller) SimulatorFinalFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorFragmentRenderingRules (class in tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules) SimulatorIntegratorFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorModelFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorMonitorFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorPSEConfigurationFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorPSERangeFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorRMFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorService (class in tvb.core.services.simulator_service) SimulatorStimulusFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorSurfaceFragment (class in tvb.adapters.forms.simulator_fragments) SimulatorWizzardURLs (class in tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls) singleton() (in module tvb.core.entities.storage.session_maker) Sinusoid (class in tvb.datatypes.equations) SINUSOID (tvb.adapters.forms.equation_forms.TemporalEquationsEnum attribute) SinusoidEquationForm (class in tvb.adapters.forms.equation_forms) skin_air (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.datatypes.projections.ProjectionMatrix attribute) SKIN_AIR_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) SkinAir (class in tvb.datatypes.surfaces) skip_group_datatypes() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.tvb_linked_export.TVBLinkedExporter method) skull_skin (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.datatypes.projections.ProjectionMatrix attribute) SKULL_SKIN_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) SkullSkin (class in tvb.datatypes.surfaces) SLEEP_TIME (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter attribute) slice (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) (tvb.adapters.visualizers.matrix_viewer.MatrixVisualizerModel attribute) slice_str() (in module tvb.core.adapters.arguments_serialisation) slope (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) source (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.datatypes.fcd.Fcd attribute) (tvb.datatypes.graph.CorrelationCoefficients attribute) (tvb.datatypes.graph.Covariance attribute) (tvb.datatypes.mode_decompositions.IndependentComponents attribute) (tvb.datatypes.mode_decompositions.PrincipalComponents attribute) (tvb.datatypes.spectral.CoherenceSpectrum attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) (tvb.datatypes.spectral.FourierSpectrum attribute) (tvb.datatypes.spectral.WaveletCoefficients attribute) (tvb.datatypes.temporal_correlations.CrossCorrelation attribute) sources (tvb.datatypes.projections.ProjectionMatrix attribute) sp (tvb.adapters.analyzers.fcd_adapter.FCDAdapterModel attribute) (tvb.datatypes.fcd.Fcd attribute) SPACE (tvb.adapters.uploaders.csv_connectivity_importer.CSVDelimiterOptionsEnum attribute) space (tvb.datatypes.patterns.SpatialPattern attribute) space_labels (tvb.datatypes.time_series.TimeSeries property) SparseCoupling (class in tvb.simulator.coupling) SparseHistory (class in tvb.simulator.history) SparseMatrix (class in tvb.core.neotraits._h5accessors) (class in tvb.core.neotraits.h5) SparseMatrixMetaData (class in tvb.core.neotraits._h5accessors) spatial (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorModel attribute) (tvb.datatypes.patterns.SpatialPattern attribute) (tvb.datatypes.patterns.StimuliRegion attribute) spatial_equation (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) SPATIAL_FIELD (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) spatial_mask (tvb.simulator.monitors.SpatialAverage attribute) spatial_param_reshape (tvb.simulator.models.base.Model property) (tvb.simulator.models.base.ModelNumbaDfun property) spatial_parameter_matrix (tvb.simulator.models.base.Model property) spatial_parameter_names (tvb.simulator.models.base.Model property) spatial_parameters (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) SPATIAL_PARAMS_FIELD (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) spatial_pattern (tvb.datatypes.patterns.SpatialPattern property) SPATIAL_TOKEN (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) SpatialApplicableEquation (class in tvb.datatypes.equations) SpatialAverage (class in tvb.simulator.monitors) SpatialAverageMonitorForm (class in tvb.adapters.forms.monitor_forms) SpatialAverageViewModel (class in tvb.core.entities.file.simulator.view_model) SpatialEquationsEnum (class in tvb.adapters.forms.equation_forms) SpatialModel (class in tvb.core.neotraits.spatial_model) SpatialPattern (class in tvb.datatypes.patterns) SpatialPatternVolume (class in tvb.datatypes.patterns) SpatioTemporalController (class in tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller) SpatioTemporalPattern (class in tvb.datatypes.patterns) SpatioTemporalPatternIndex (class in tvb.adapters.datatypes.db.patterns) spectrum_types (tvb.adapters.datatypes.h5.spectral_h5.ComplexCoherenceSpectrumH5 attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) speed (tvb.datatypes.connectivity.Connectivity attribute) stage_out_to_operation_folder() (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient static method) STAGINGIN (tvb.core.services.backend_clients.hpc_scheduler_client.HPCJobStatus attribute) STAGINGOUT (tvb.core.services.backend_clients.hpc_scheduler_client.HPCJobStatus attribute) StandAloneClient (class in tvb.core.services.backend_clients.standalone_client) start() (tvb.storage.storage_interface.StorageInterface method) start_date (tvb.core.entities.model.model_operation.Operation attribute) start_now() (tvb.core.entities.model.model_operation.Operation method) start_operation() (tvb.core.services.backend_clients.standalone_client.StandAloneClient static method) start_operation_pod() (tvb.interfaces.web.controllers.kube_controller.KubeController method) start_point (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterModel attribute) start_time (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.datatypes.time_series.TimeSeries attribute)

start_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method) start_tvb() (in module tvb.interfaces.web.run) startup_cleanup() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) state (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) state_variable_boundaries (tvb.rateML.generatedModels.kuramoto.KuramotoT attribute) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.integrators.Integrator attribute) (tvb.simulator.models.base.Model attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) state_variable_dfuns (tvb.simulator.models.linear.Linear attribute) state_variable_mask (tvb.simulator.models.base.Model attribute) state_variable_range (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.kuramoto.KuramotoT attribute) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.hopfield.Hopfield attribute) (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) (tvb.simulator.models.linear.Linear attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.oscillator.Kuramoto attribute) (tvb.simulator.models.oscillator.SupHopf attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) state_variables (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.kuramoto.KuramotoT attribute) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.models.base.Model attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.hopfield.Hopfield attribute) (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) (tvb.simulator.models.linear.Linear attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.oscillator.Kuramoto attribute) (tvb.simulator.models.oscillator.SupHopf attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) STATES (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) StateVariableRangesForm (class in tvb.adapters.forms.model_forms) StaticAttr (class in tvb.simulator.descriptors) StaticFiltersFactory (class in tvb.core.entities.filters.factory) stationary_trajectory() (tvb.simulator.models.base.Model method) STATUS (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) status (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_operation.Operation attribute) STATUS_COMMAND (tvb.basic.config.settings.ClusterSettings property) step (tvb.adapters.visualizers.connectivity.ConnectivityViewerModel attribute) (tvb.core.neotraits.forms.FloatField attribute) step_1() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_1_submit() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_2() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_2_submit() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_analyzers() (tvb.interfaces.web.controllers.flow_controller.FlowController method) step_connectivity() (tvb.interfaces.web.controllers.flow_controller.FlowController method) STEP_FIELD (tvb.adapters.forms.simulator_fragments.SimulatorPSERangeFragment attribute) StimuliRegion (class in tvb.datatypes.patterns) StimuliRegionH5 (class in tvb.adapters.datatypes.h5.patterns_h5) StimuliRegionIndex (class in tvb.adapters.datatypes.db.patterns) StimuliSurface (class in tvb.datatypes.patterns) StimuliSurfaceH5 (class in tvb.adapters.datatypes.h5.patterns_h5) StimuliSurfaceIndex (class in tvb.adapters.datatypes.db.patterns) stimulus (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel attribute) (tvb.simulator.simulator.Simulator attribute) STIMULUS_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) StimulusRegionSelectorForm (class in tvb.adapters.creators.stimulus_creator) StimulusSurfaceSelectorForm (class in tvb.adapters.creators.stimulus_creator) STOCHASTIC_HEUN (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) STOCHASTIC_VARIABLE_ODER_ADAMS (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) stop() (tvb.core.services.backend_clients.hpc_scheduler_client.HPCOperationThread method) STOP_COMMAND (tvb.basic.config.settings.ClusterSettings property) stop_operation() (tvb.core.services.backend_client_factory.BackendClientFactory static method) (tvb.core.services.backend_clients.backend_client.BackendClient static method) (tvb.core.services.backend_clients.cluster_scheduler_client.ClusterSchedulerClient static method) (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient static method) (tvb.core.services.backend_clients.standalone_client.StandAloneClient static method) (tvb.core.services.operation_service.OperationService static method) stop_operation_process() (tvb.core.services.backend_clients.standalone_client.StandAloneClient static method) (tvb.interfaces.web.controllers.kube_controller.KubeController method) stop_pid() (tvb.core.services.backend_clients.standalone_client.OperationExecutor static method) stopped() (tvb.core.services.backend_clients.hpc_scheduler_client.HPCOperationThread method) (tvb.core.services.backend_clients.standalone_client.OperationExecutor method) storage_interface (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) storage_requirement() (tvb.simulator.simulator.Simulator method) StorageInterface (class in tvb.storage.storage_interface) store() (in module tvb.core.neocom.h5), [1] (tvb.adapters.datatypes.h5.annotation_h5.ConnectivityAnnotationsH5 method) (tvb.adapters.datatypes.h5.connectivity_h5.ConnectivityH5 method) (tvb.adapters.datatypes.h5.graph_h5.ConnectivityMeasureH5 method) (tvb.adapters.datatypes.h5.local_connectivity_h5.LocalConnectivityH5 method) (tvb.adapters.datatypes.h5.patterns_h5.StimuliRegionH5 method) (tvb.adapters.datatypes.h5.patterns_h5.StimuliSurfaceH5 method) (tvb.adapters.datatypes.h5.sensors_h5.SensorsH5 method) (tvb.adapters.datatypes.h5.surface_h5.SurfaceH5 method) (tvb.core.entities.file.simulator.burst_configuration_h5.BurstConfigurationH5 method) (tvb.core.neocom._h5loader.DirLoader method) (tvb.core.neocom._h5loader.DtLoader method) (tvb.core.neocom._h5loader.Loader method) (tvb.core.neocom._h5loader.ViewModelLoader method) (tvb.core.neotraits._h5accessors.Accessor method) (tvb.core.neotraits._h5accessors.DataSet method) (tvb.core.neotraits._h5accessors.Enum method) (tvb.core.neotraits._h5accessors.EquationScalar method) (tvb.core.neotraits._h5accessors.Json method) (tvb.core.neotraits._h5accessors.JsonRange method) (tvb.core.neotraits._h5accessors.Reference method) (tvb.core.neotraits._h5accessors.ReferenceList method) (tvb.core.neotraits._h5accessors.Scalar method) (tvb.core.neotraits._h5accessors.SparseMatrix method) (tvb.core.neotraits._h5accessors.Uuid method) (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.DataSet method) (tvb.core.neotraits.h5.H5File method) (tvb.core.neotraits.h5.Json method) (tvb.core.neotraits.h5.Reference method) (tvb.core.neotraits.h5.Scalar method) (tvb.core.neotraits.h5.SparseMatrix method) store_burst() (tvb.core.services.burst_service.BurstService static method) store_burst_configuration() (tvb.core.services.burst_service.BurstService static method) store_complete() (in module tvb.core.neocom.h5), [1] (tvb.adapters.simulator.hpc_simulator_adapter.HPCSimulatorAdapter method) (tvb.adapters.simulator.hpc_simulator_adapter.HPCTimeseriesMetricsAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) store_complete_to_dir() (in module tvb.core.neocom.h5) store_data() (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager method) store_datatype() (tvb.core.services.import_service.ImportService method) store_entities() (tvb.core.entities.storage.root_dao.RootDAO method) store_entity() (tvb.core.entities.storage.root_dao.RootDAO method) store_exploration_section() (tvb.interfaces.web.controllers.flow_controller.FlowController method) store_generic_attributes() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) store_ht() (in module tvb.core.neocom.h5) store_measure_points_selection() (tvb.interfaces.web.controllers.flow_controller.FlowController method) store_metadata_param() (tvb.core.neotraits._h5core.H5File method) (tvb.core.neotraits.h5.H5File method) store_or_link_datatype() (tvb.core.services.import_service.ImportService method) store_project() (tvb.core.services.project_service.ProjectService method) store_pse_filter() (tvb.interfaces.web.controllers.flow_controller.FlowController method) store_references() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesEEGH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesMEGH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesRegionH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesSEEGH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesSensorsH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesSurfaceH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesVolumeH5 method) store_result_figure() (tvb.core.services.figure_service.FigureService method) store_to_dir() (in module tvb.core.neocom.h5) store_view_model() (in module tvb.core.neocom.h5) (tvb.core.services.operation_service.OperationService static method) stored_adapter (tvb.core.adapters.abcadapter.ABCAdapter attribute) StoredPSEFilter (class in tvb.core.entities.model.model_datatype) storeresultfigure() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) Str (class in tvb.core.neotraits.view_model) Strength (class in tvb.adapters.analyzers.bct_degree_adapters) StrengthISOS (class in tvb.adapters.analyzers.bct_degree_adapters) StrengthWeights (class in tvb.adapters.analyzers.bct_degree_adapters) StrField (class in tvb.core.neotraits.forms) string2bool() (in module tvb.core.utils) (in module tvb.storage.h5.utils) string2date() (in module tvb.core.utils) (in module tvb.storage.h5.utils) string_to_enum() (tvb.basic.neotraits._core.TVBEnum static method) Strings (class in tvb.interfaces.rest.commons.strings) Struct (class in tvb.simulator.common) StructuralMRI (class in tvb.datatypes.structural) StructuralMRIH5 (class in tvb.adapters.datatypes.h5.structural_h5) StructuralMRIIndex (class in tvb.adapters.datatypes.db.structural) structure_path (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) StructureException StructureNode (class in tvb.core.entities.transient.structure_entities) stvar (tvb.simulator.models.base.Model attribute) SUB_SECTION_ACCOUNT (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ALLEN (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_1 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_10 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_11 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_12 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_13 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_14 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_15 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_16 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_17 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_18 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_2 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_3 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_4 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_5 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_6 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_7 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_8 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_9 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_BURST (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_CONNECTIVITY_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_DATA_STRUCTURE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_FIGURES (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_LIST_PROJECTS (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_LOCAL_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_LOGIN (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_MODEL_REGIONS (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_MODEL_SURFACE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_NOISE_CONFIGURATION (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_OPERATIONS (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_PHASE_PLANE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_PROJECT_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_PROPERTIES_PROJECT (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_SIIBRA (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_STIMULUS_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_STIMULUS_REGION (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_STIMULUS_SURFACE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_0 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_1 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_10 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_11 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_12 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_13 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_14 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_15 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_16 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_17 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_18 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_19 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_2 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_20 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_21 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_22 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_23 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_24 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_25 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_3 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_4 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_5 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_6 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_7 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_8 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_9 (tvb.interfaces.web.structure.WebStructure attribute) subcortical_indices (tvb.datatypes.connectivity.Connectivity property) subform_prefix (tvb.core.neotraits.forms.DynamicSelectField attribute) (tvb.core.neotraits.forms.SelectField attribute) SubformEnum (class in tvb.basic.neotraits._core) SubgraphCentrality (class in tvb.adapters.analyzers.bct_centrality_adapters) subject (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.transient.structure_entities.DataTypeMetaData property) SUBJECT_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) subject_build_data_check() (tvb.interfaces.rest.bids_monitor.bids_data_builder.BIDSDataBuilder method) subject_ids (tvb.adapters.creators.siibra_creator.SiibraModel attribute) SUBJECT_PREFIX (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) submit() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController method) submit_form() (tvb.core.adapters.abcadapter.ABCAdapter method) submit_model_parameter() (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController method) submit_model_parameters() (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) SubSample (class in tvb.simulator.monitors) SubSampleViewModel (class in tvb.core.entities.file.simulator.view_model) subsection_name (tvb.core.entities.model.model_operation.Algorithm attribute) subtract_epoch_average (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) subtype (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) SUCCESSFUL (tvb.core.services.backend_clients.hpc_scheduler_client.HPCJobStatus attribute) SUM (tvb.analyzers.fmri_balloon.NeuralInputTransformations attribute) summary() (tvb.datatypes.surfaces.ValidationResult method) summary_info (tvb.core.entities.model.model_datatype.DataType property) summary_info() (tvb.basic.neotraits._core.HasTraits method) (tvb.basic.neotraits.api.HasTraits method) (tvb.datatypes.connectivity.Connectivity method) (tvb.datatypes.equations.Equation method) (tvb.datatypes.fcd.Fcd method) (tvb.datatypes.graph.ConnectivityMeasure method) (tvb.datatypes.graph.CorrelationCoefficients method) (tvb.datatypes.graph.Covariance method) (tvb.datatypes.local_connectivity.LocalConnectivity method) (tvb.datatypes.mode_decompositions.IndependentComponents method) (tvb.datatypes.mode_decompositions.PrincipalComponents method) (tvb.datatypes.patterns.SpatialPattern method) (tvb.datatypes.patterns.SpatioTemporalPattern method) (tvb.datatypes.sensors.Sensors method) (tvb.datatypes.spectral.CoherenceSpectrum method) (tvb.datatypes.spectral.ComplexCoherenceSpectrum method) (tvb.datatypes.spectral.FourierSpectrum method) (tvb.datatypes.spectral.WaveletCoefficients method) (tvb.datatypes.surfaces.Surface method) (tvb.datatypes.temporal_correlations.CrossCorrelation method) (tvb.datatypes.time_series.SensorsTSBase method) (tvb.datatypes.time_series.TimeSeries method) (tvb.datatypes.time_series.TimeSeriesRegion method) (tvb.datatypes.time_series.TimeSeriesSurface method) (tvb.datatypes.time_series.TimeSeriesVolume method) (tvb.datatypes.volumes.Volume method) (tvb.simulator.simulator.Simulator method) SUP_HOPF (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) SupHopf (class in tvb.simulator.models.oscillator) SupHopfModelForm (class in tvb.adapters.forms.model_forms) SUPPORTED_WINDOWING_FUNCTIONS (in module tvb.analyzers.fft) Surface (class in tvb.datatypes.surfaces) surface (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreatorModel attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorModel attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporterModel attribute) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixImporterModel attribute) (tvb.adapters.uploaders.region_mapping_importer.RegionMappingImporterModel attribute) (tvb.adapters.visualizers.surface_view.SurfaceViewerModel attribute) (tvb.core.entities.file.simulator.view_model.SimulatorAdapterModel attribute) (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.local_connectivity.LocalConnectivity attribute) (tvb.datatypes.patterns.StimuliSurface attribute) (tvb.datatypes.region_mapping.RegionMapping attribute) (tvb.datatypes.time_series.TimeSeriesSurface attribute) (tvb.simulator.simulator.Simulator attribute) surface_data (tvb.adapters.visualizers.connectivity.ConnectivityViewerModel attribute) SURFACE_FIELD (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController attribute) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) surface_gid (tvb.core.entities.file.simulator.view_model.CortexViewModel attribute) surface_state_to_rois() (tvb.simulator.backend.ref.RefSurface static method) surface_type (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporterModel attribute) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporterModel attribute) (tvb.datatypes.surfaces.BrainSkull attribute) (tvb.datatypes.surfaces.CorticalSurface attribute) (tvb.datatypes.surfaces.EEGCap attribute) (tvb.datatypes.surfaces.FaceSurface attribute) (tvb.datatypes.surfaces.SkinAir attribute) (tvb.datatypes.surfaces.SkullSkin attribute) (tvb.datatypes.surfaces.Surface attribute) (tvb.datatypes.surfaces.WhiteMatterSurface attribute) SurfaceContextModelParameters (class in tvb.interfaces.web.entities.context_model_parameters) SurfaceH5 (class in tvb.adapters.datatypes.h5.surface_h5) SurfaceIndex (class in tvb.adapters.datatypes.db.surface) SurfaceModelEquationsEnum (class in tvb.adapters.forms.equation_forms) (class in tvb.adapters.forms.surface_model_parameters_form) SurfaceModelParametersController (class in tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller) SurfaceModelParametersForm (class in tvb.adapters.forms.surface_model_parameters_form) SurfaceStimulusController (class in tvb.interfaces.web.controllers.spatial.surface_stimulus_controller) SurfaceStimulusCreator (class in tvb.adapters.creators.stimulus_creator) SurfaceStimulusCreatorForm (class in tvb.adapters.creators.stimulus_creator) SurfaceStimulusCreatorModel (class in tvb.adapters.creators.stimulus_creator) SurfaceTypesEnum (class in tvb.datatypes.surfaces) SurfaceURLGenerator (class in tvb.adapters.visualizers.surface_view) SurfaceVerticesNrValidator (class in tvb.interfaces.web.controllers.settings_controller) SurfaceViewer (class in tvb.adapters.visualizers.surface_view) SurfaceViewerForm (class in tvb.adapters.visualizers.surface_view) SurfaceViewerModel (class in tvb.adapters.visualizers.surface_view) SVN_GIT_MIGRATION_REVISION (tvb.basic.config.settings.VersionSettings attribute) sw (tvb.adapters.analyzers.fcd_adapter.FCDAdapterModel attribute) (tvb.datatypes.fcd.Fcd attribute) swap_language_specific_terms() (tvb.rateML.XML2model.RateML method) switch_online_help() (tvb.interfaces.web.controllers.users_controller.UserController method) switch_online_help_state() (tvb.core.entities.model.model_project.User method) SYNC_DIFF_MEM (tvb.core.adapters.abcadapter.AdapterLaunchModeEnum attribute) sync_folders() (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler method) (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionRemoteHandler method) (tvb.storage.storage_interface.StorageInterface method) sync_project_queue (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) SYNC_SAME_MEM (tvb.core.adapters.abcadapter.AdapterLaunchModeEnum attribute) synchronized() (in module tvb.storage.h5.decorators) SYSTEM_USER_NAME (tvb.basic.config.settings.WebAdminSettings attribute)

T

t_end (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterModel attribute) t_scale (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) t_start (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterModel attribute) tab (tvb.adapters.uploaders.csv_connectivity_importer.CSVDelimiterOptionsEnum attribute) tag() (tvb.basic.neotraits._core.HasTraits method) (tvb.basic.neotraits.api.HasTraits method) (tvb.simulator.simulator.Simulator method) tags (tvb.basic.neotraits._core.HasTraits attribute) (tvb.basic.neotraits.api.HasTraits attribute) (tvb.simulator.simulator.Simulator attribute) tau (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) tau_E (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) tau_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) tau_f (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) tau_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) tau_i (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) tau_K (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) tau_o (tvb.analyzers.fmri_balloon.BalloonModel attribute) tau_s (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) tauT (tvb.simulator.models.hopfield.Hopfield attribute) taux (tvb.simulator.models.hopfield.Hopfield attribute) TCa (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) TE (tvb.analyzers.fmri_balloon.BalloonModel attribute) teardown_method() (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) TEMP_FOLDER (tvb.storage.storage_interface.StorageInterface attribute) template (tvb.adapters.forms.integrator_forms.IntegratorStochasticForm attribute) (tvb.core.neotraits.forms.ArrayField attribute) (tvb.core.neotraits.forms.BoolField attribute) (tvb.core.neotraits.forms.DynamicSelectField attribute) (tvb.core.neotraits.forms.Field attribute) (tvb.core.neotraits.forms.FloatField attribute) (tvb.core.neotraits.forms.FormField attribute) (tvb.core.neotraits.forms.HiddenField attribute) (tvb.core.neotraits.forms.IntField attribute) (tvb.core.neotraits.forms.LabelField attribute) (tvb.core.neotraits.forms.MultiSelectField attribute) (tvb.core.neotraits.forms.SelectField attribute) (tvb.core.neotraits.forms.StrField attribute) (tvb.core.neotraits.forms.TraitDataTypeSelectField attribute) (tvb.core.neotraits.forms.TraitUploadField attribute) (tvb.core.neotraits.forms.UserSessionStrField attribute) temporal (tvb.adapters.creators.stimulus_creator.RegionStimulusCreatorModel attribute) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreatorModel attribute) (tvb.datatypes.patterns.SpatioTemporalPattern attribute) temporal_equation (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) TEMPORAL_FIELD (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController attribute) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) temporal_parameters (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) TEMPORAL_PARAMS_FIELD (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController attribute) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController attribute) temporal_pattern (tvb.datatypes.patterns.SpatioTemporalPattern property) TemporalApplicableEquation (class in tvb.datatypes.equations) TemporalAverage (class in tvb.simulator.monitors) TemporalAverageViewModel (class in tvb.core.entities.file.simulator.view_model) TemporalEquationsEnum (class in tvb.adapters.forms.equation_forms) test_create_bids_dataset() (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) test_fire_simulation() (tvb.interfaces.rest.client.tests.rest_test.TestRestService method) test_launch_operation() (tvb.interfaces.rest.client.tests.rest_test.TestRestService method) TEST_LIBRARY_PROFILE (tvb.basic.profile.TvbProfile attribute) test_monitor_bids_dataset() (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder method) TEST_POSTGRES_PROFILE (tvb.basic.profile.TvbProfile attribute) TEST_SQLITE_PROFILE (tvb.basic.profile.TvbProfile attribute) TestBIDSDataBuilder (class in tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test) TestLibraryProfile (class in tvb.basic.config.profile_settings) TestPostgresProfile (class in tvb.config.profile_settings) TestRestService (class in tvb.interfaces.rest.client.tests.rest_test) TestSQLiteProfile (class in tvb.config.profile_settings) theta (tvb.simulator.coupling.PreSigmoidal attribute) theta_e (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) theta_i (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) ThreadNrValidator (class in tvb.interfaces.web.controllers.settings_controller) threshold_value (tvb.core.entities.model.model_datatype.StoredPSEFilter attribute) time (tvb.datatypes.patterns.SpatioTemporalPattern attribute) (tvb.datatypes.temporal_correlations.CrossCorrelation attribute) (tvb.datatypes.time_series.TimeSeries attribute) time_series (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapterModel attribute) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapterModel attribute) (tvb.adapters.analyzers.fcd_adapter.FCDAdapterModel attribute) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapterModel attribute) (tvb.adapters.analyzers.fourier_adapter.FFTAdapterModel attribute) (tvb.adapters.analyzers.ica_adapter.ICAAdapterModel attribute) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapterModel attribute) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceModel attribute) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapterModel attribute) (tvb.adapters.analyzers.pca_adapter.PCAAdapterModel attribute) (tvb.adapters.analyzers.wavelet_adapter.WaveletAdapterModel attribute) (tvb.adapters.visualizers.brain.BrainViewerModel attribute) (tvb.adapters.visualizers.brain.DualBrainViewerModel attribute) (tvb.adapters.visualizers.time_series.TimeSeriesModel attribute) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiserModel attribute) (tvb.analyzers.fmri_balloon.BalloonModel attribute) TIME_SERIES_CSV_FILE (tvb.adapters.uploaders.tumor_dataset_importer.TumorDatasetImporter attribute) time_series_type (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) TIME_STEP_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) time_stride (tvb.simulator.history.SparseHistory attribute) time_unit (tvb.datatypes.time_series.TimeSeries property) TimeSeries (class in tvb.datatypes.time_series) TimeSeriesDisplay (class in tvb.adapters.visualizers.time_series) TimeSeriesEEG (class in tvb.datatypes.time_series) TimeSeriesEEGH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesEEGIndex (class in tvb.adapters.datatypes.db.time_series) TimeSeriesForm (class in tvb.adapters.visualizers.time_series) TimeSeriesH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesIndex (class in tvb.adapters.datatypes.db.time_series) TimeSeriesMEG (class in tvb.datatypes.time_series) TimeSeriesMEGH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesMEGIndex (class in tvb.adapters.datatypes.db.time_series) TimeseriesMetricsAdapter (class in tvb.adapters.analyzers.metrics_group_timeseries) TimeseriesMetricsAdapterForm (class in tvb.adapters.analyzers.metrics_group_timeseries) TimeseriesMetricsAdapterModel (class in tvb.adapters.analyzers.metrics_group_timeseries) TimeSeriesModel (class in tvb.adapters.visualizers.time_series) TimeSeriesRegion (class in tvb.datatypes.time_series) TimeSeriesRegionH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesRegionIndex (class in tvb.adapters.datatypes.db.time_series) TimeSeriesSEEG (class in tvb.datatypes.time_series) TimeSeriesSEEGH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesSEEGIndex (class in tvb.adapters.datatypes.db.time_series) TimeSeriesSensorsH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesSurface (class in tvb.datatypes.time_series) TimeSeriesSurfaceH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesSurfaceIndex (class in tvb.adapters.datatypes.db.time_series) TimeSeriesVolume (class in tvb.datatypes.time_series) TimeSeriesVolumeH5 (class in tvb.adapters.datatypes.h5.time_series_h5) TimeSeriesVolumeIndex (class in tvb.adapters.datatypes.db.time_series) TimeSeriesVolumeVisualiser (class in tvb.adapters.visualizers.time_series_volume) TimeSeriesVolumeVisualiserForm (class in tvb.adapters.visualizers.time_series_volume) TimeSeriesVolumeVisualiserModel (class in tvb.adapters.visualizers.time_series_volume) title (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.adapters.visualizers.surface_view.SurfaceViewerModel attribute) (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.neotraits.db.HasTraitsIndex attribute) (tvb.datatypes.time_series.TimeSeries attribute) (tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController attribute) TK (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) TNa (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) to_array() (tvb.basic.neotraits._attr.LinspaceRange method) (tvb.basic.neotraits._attr.Range method) to_dict() (tvb.core.entities.exportable.Exportable method) (tvb.core.entities.filters.chain.UIFilter method) (tvb.core.entities.model.model_operation.Operation method) (tvb.core.entities.model.model_operation.ResultFigure method) (tvb.core.entities.model.model_project.Project method) (tvb.core.neotraits._h5accessors.DataSetMetaData method) (tvb.core.neotraits._h5accessors.SparseMatrixMetaData method) (tvb.interfaces.rest.commons.exceptions.BaseRestException method) (tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules.SimulatorFragmentRenderingRules method) to_json() (tvb.adapters.datatypes.db.annotation.AnnotationTerm method) (tvb.core.entities.filters.chain.FilterChain method) (tvb.core.entities.transient.range_parameter.RangeParameter method) to_tuple() (tvb.adapters.datatypes.db.annotation.AnnotationTerm method) TopographicViewer (class in tvb.adapters.visualizers.topographic) TopographicViewerForm (class in tvb.adapters.visualizers.topographic) TopographicViewerModel (class in tvb.adapters.visualizers.topographic) TopographyCalculations (class in tvb.adapters.visualizers.topographic) total_ms() (in module tvb.simulator.common) TRACE (in module tvb.interfaces.web.controllers.autologging) traced() (in module tvb.interfaces.web.controllers.autologging) TrackImporterForm (class in tvb.adapters.uploaders.tract_importer) TrackImporterModel (class in tvb.adapters.uploaders.tract_importer) TrackvizTractsImporter (class in tvb.adapters.uploaders.tract_importer) TrackZipImporterForm (class in tvb.adapters.uploaders.tract_importer) TRACT_FILE (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute) tract_lengths (tvb.datatypes.connectivity.Connectivity attribute) tract_lengths_max (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) tract_lengths_mean (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) tract_lengths_min (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) tract_region (tvb.datatypes.tracts.Tracts attribute) tract_start_idx (tvb.datatypes.tracts.Tracts attribute) TRACT_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) Tracts (class in tvb.datatypes.tracts) TRACTS (tvb.adapters.creators.siibra_base.Component2Modality attribute) tracts (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterModel attribute) (tvb.adapters.visualizers.tract.TractViewerModel attribute) tracts_count (tvb.datatypes.tracts.Tracts property) tracts_delimiter (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterModel attribute) TractsH5 (class in tvb.adapters.datatypes.h5.tracts_h5) TractsIndex (class in tvb.adapters.datatypes.db.tracts) TractViewer (class in tvb.adapters.visualizers.tract) TractViewerForm (class in tvb.adapters.visualizers.tract) TractViewerModel (class in tvb.adapters.visualizers.tract) TRADE_CRASH_SAFETY_FOR_SPEED (tvb.config.profile_settings.TestSQLiteProfile attribute) trait_fields (tvb.core.neotraits.forms.Form property) trait_object_repr_html() (in module tvb.basic.neotraits.info) trait_object_str() (in module tvb.basic.neotraits.info) trait_property() (in module tvb.basic.neotraits._core) (in module tvb.basic.neotraits.api) TraitAttributeError, [1] TraitDataTypeSelectField (class in tvb.core.neotraits.forms) TraitError, [1] TraitField (class in tvb.core.neotraits.forms) TraitFinalAttributeError, [1] TraitProperty (class in tvb.basic.neotraits._core) TraitTypeError, [1] TraitUploadField (class in tvb.core.neotraits.forms) TraitValueError, [1] trajectories() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) transactional() (in module tvb.core.entities.storage.session_maker) transactional_setup_method_TVB() (tvb.interfaces.rest.client.tests.rest_test.TestRestService method) transfer_function_label (tvb.adapters.forms.transfer_vector_form.TransferVectorForm attribute) TransferVectorContext (class in tvb.interfaces.web.entities.context_transfer_vector) TransferVectorController (class in tvb.interfaces.web.controllers.burst.transfer_vector_controller) TransferVectorEquationsEnum (class in tvb.adapters.forms.equation_forms) TransferVectorForm (class in tvb.adapters.forms.transfer_vector_form) transform_binarize_matrix() (tvb.datatypes.connectivity.Connectivity method) transform_remove_self_connections() (tvb.datatypes.connectivity.Connectivity method) TransitivityBinaryDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TransitivityBinaryUnDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TransitivityWeightedDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TransitivityWeightedUnDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) transpose (tvb.adapters.uploaders.mat_timeseries_importer.RegionMatTimeSeriesImporterModel attribute) tree_json() (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) triangle_angles (tvb.datatypes.surfaces.Surface property) triangle_areas (tvb.datatypes.surfaces.Surface property) triangle_centres (tvb.datatypes.surfaces.Surface property) triangle_normals (tvb.datatypes.surfaces.Surface attribute) triangles (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.surfaces.Surface attribute) TRIANGLES_FILE (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) TRIANGLES_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) try_compute_hemispheres() (tvb.datatypes.connectivity.Connectivity method) try_get_absolute_path() (in module tvb.basic.readers) try_get_last_datatype() (in module tvb.core.entities.load) try_get_operation_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) try_load_last_entity_of_type() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) ts_builder (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter attribute) TS_JSON_TO_COPY (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder attribute) TS_TO_COPY (tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test.TestBIDSDataBuilder attribute) TS_TOKEN (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) tstype (tvb.adapters.uploaders.mat_timeseries_eeg_importer.EEGRegionTimeSeriesImporter attribute) (tvb.adapters.uploaders.mat_timeseries_importer.RegionTimeSeriesImporter attribute) TSV_EXTENSION (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) tt (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) TumorDatasetImporter (class in tvb.adapters.uploaders.tumor_dataset_importer) TumorDatasetImporterForm (class in tvb.adapters.uploaders.tumor_dataset_importer) TumorDatasetImporterModel (class in tvb.adapters.uploaders.tumor_dataset_importer) TupleEnum (class in tvb.basic.neotraits._core) tvb() (tvb.interfaces.web.controllers.base_controller.BaseController method) tvb.__init__ module tvb.adapters.analyzers module tvb.adapters.analyzers.bct_adapters module tvb.adapters.analyzers.bct_centrality_adapters module tvb.adapters.analyzers.bct_clustering_adapters module tvb.adapters.analyzers.bct_degree_adapters module tvb.adapters.analyzers.cross_correlation_adapter module tvb.adapters.analyzers.fcd_adapter module tvb.adapters.analyzers.fmri_balloon_adapter module tvb.adapters.analyzers.fourier_adapter module tvb.adapters.analyzers.ica_adapter module tvb.adapters.analyzers.metrics_group_timeseries module tvb.adapters.analyzers.node_coherence_adapter module tvb.adapters.analyzers.node_complex_coherence_adapter module tvb.adapters.analyzers.node_covariance_adapter module tvb.adapters.analyzers.pca_adapter module tvb.adapters.analyzers.wavelet_adapter module tvb.adapters.creators module tvb.adapters.creators.allen_creator module tvb.adapters.creators.connectivity_creator module tvb.adapters.creators.local_connectivity_creator module tvb.adapters.creators.siibra_base module tvb.adapters.creators.siibra_creator module tvb.adapters.creators.stimulus_creator module tvb.adapters.datatypes.db module tvb.adapters.datatypes.db.annotation module tvb.adapters.datatypes.db.connectivity module tvb.adapters.datatypes.db.fcd module tvb.adapters.datatypes.db.graph module tvb.adapters.datatypes.db.local_connectivity module tvb.adapters.datatypes.db.mapped_value module tvb.adapters.datatypes.db.mode_decompositions module tvb.adapters.datatypes.db.patterns module tvb.adapters.datatypes.db.projections module tvb.adapters.datatypes.db.region_mapping module tvb.adapters.datatypes.db.sensors module tvb.adapters.datatypes.db.simulation_history module tvb.adapters.datatypes.db.spectral module tvb.adapters.datatypes.db.structural module tvb.adapters.datatypes.db.surface module tvb.adapters.datatypes.db.temporal_correlations module tvb.adapters.datatypes.db.time_series module tvb.adapters.datatypes.db.tracts module tvb.adapters.datatypes.db.volume module tvb.adapters.datatypes.h5.annotation_h5 module tvb.adapters.datatypes.h5.connectivity_h5 module tvb.adapters.datatypes.h5.fcd_h5 module tvb.adapters.datatypes.h5.graph_h5 module tvb.adapters.datatypes.h5.local_connectivity_h5 module tvb.adapters.datatypes.h5.mapped_value_h5 module tvb.adapters.datatypes.h5.mode_decompositions_h5 module tvb.adapters.datatypes.h5.patterns_h5 module tvb.adapters.datatypes.h5.projections_h5 module tvb.adapters.datatypes.h5.region_mapping_h5 module tvb.adapters.datatypes.h5.sensors_h5 module tvb.adapters.datatypes.h5.spectral_h5 module tvb.adapters.datatypes.h5.structural_h5 module tvb.adapters.datatypes.h5.surface_h5 module tvb.adapters.datatypes.h5.temporal_correlations_h5 module tvb.adapters.datatypes.h5.time_series_h5 module tvb.adapters.datatypes.h5.tracts_h5 module tvb.adapters.datatypes.h5.volumes_h5 module tvb.adapters.exporters module tvb.adapters.exporters.abcexporter module tvb.adapters.exporters.exceptions module tvb.adapters.exporters.export_manager module tvb.adapters.exporters.tvb_export module tvb.adapters.exporters.tvb_linked_export module tvb.adapters.forms.coupling_forms module tvb.adapters.forms.equation_forms module tvb.adapters.forms.equation_plot_forms module tvb.adapters.forms.form_with_ranges module tvb.adapters.forms.integrator_forms module tvb.adapters.forms.model_forms module tvb.adapters.forms.monitor_forms module tvb.adapters.forms.noise_forms module tvb.adapters.forms.simulator_fragments module tvb.adapters.forms.surface_model_parameters_form module tvb.adapters.forms.transfer_vector_form module tvb.adapters.simulator module tvb.adapters.simulator.hpc_simulator_adapter module tvb.adapters.simulator.range_parameters module tvb.adapters.simulator.simulator_adapter module tvb.adapters.uploaders module tvb.adapters.uploaders.bids_importer module tvb.adapters.uploaders.brco.parser module tvb.adapters.uploaders.brco_importer module tvb.adapters.uploaders.connectivity_measure_importer module tvb.adapters.uploaders.csv_connectivity_importer module tvb.adapters.uploaders.gifti.parser module tvb.adapters.uploaders.gifti_surface_importer module tvb.adapters.uploaders.gifti_timeseries_importer module tvb.adapters.uploaders.mat.parser module tvb.adapters.uploaders.mat_timeseries_eeg_importer module tvb.adapters.uploaders.mat_timeseries_importer module tvb.adapters.uploaders.networkx_connectivity.parser module tvb.adapters.uploaders.networkx_importer module tvb.adapters.uploaders.nifti.parser module tvb.adapters.uploaders.nifti_importer module tvb.adapters.uploaders.obj.parser module tvb.adapters.uploaders.obj.surface module tvb.adapters.uploaders.obj_importer module tvb.adapters.uploaders.projection_matrix_importer module tvb.adapters.uploaders.region_mapping_importer module tvb.adapters.uploaders.sensors_importer module tvb.adapters.uploaders.tract_importer module tvb.adapters.uploaders.tumor_dataset_importer module tvb.adapters.uploaders.tvb_importer module tvb.adapters.uploaders.zip_connectivity_importer module tvb.adapters.uploaders.zip_surface.parser module tvb.adapters.uploaders.zip_surface_importer module tvb.adapters.visualizers module tvb.adapters.visualizers.annotations_viewer module tvb.adapters.visualizers.brain module tvb.adapters.visualizers.complex_imaginary_coherence module tvb.adapters.visualizers.connectivity module tvb.adapters.visualizers.connectivity_edge_bundle module tvb.adapters.visualizers.cross_coherence module tvb.adapters.visualizers.cross_correlation module tvb.adapters.visualizers.eeg_monitor module tvb.adapters.visualizers.fourier_spectrum module tvb.adapters.visualizers.histogram module tvb.adapters.visualizers.ica module tvb.adapters.visualizers.local_connectivity_view module tvb.adapters.visualizers.matrix_viewer module tvb.adapters.visualizers.pca module tvb.adapters.visualizers.pearson_cross_correlation module tvb.adapters.visualizers.pearson_edge_bundle module tvb.adapters.visualizers.phase_plane_interactive module tvb.adapters.visualizers.pse module tvb.adapters.visualizers.pse_discrete module tvb.adapters.visualizers.pse_isocline module tvb.adapters.visualizers.region_volume_mapping module tvb.adapters.visualizers.sensors module tvb.adapters.visualizers.surface_view module tvb.adapters.visualizers.time_series module tvb.adapters.visualizers.time_series_volume module tvb.adapters.visualizers.topographic module tvb.adapters.visualizers.tract module tvb.adapters.visualizers.wavelet_spectrogram module tvb.analyzers module tvb.analyzers.fft module tvb.analyzers.fmri_balloon module tvb.analyzers.graph module tvb.analyzers.ica module tvb.analyzers.ica_algorithm module tvb.analyzers.info module tvb.analyzers.metric_kuramoto_index module tvb.analyzers.metric_proxy_metastability module tvb.analyzers.metric_variance_global module tvb.analyzers.metric_variance_of_node_variance module tvb.analyzers.node_coherence module tvb.analyzers.node_complex_coherence module tvb.analyzers.pca module tvb.analyzers.wavelet module tvb.basic.config.environment module tvb.basic.config.profile_settings module tvb.basic.config.settings module tvb.basic.config.stored module tvb.basic.config.utils module tvb.basic.exceptions module tvb.basic.logger.builder module tvb.basic.logger.simple_handler module tvb.basic.neotraits module tvb.basic.neotraits._attr module tvb.basic.neotraits._core module tvb.basic.neotraits._declarative_base module tvb.basic.neotraits.api module tvb.basic.neotraits.ex module, [1]

tvb.basic.neotraits.info module tvb.basic.profile module tvb.basic.readers module tvb.config module tvb.config.algorithm_categories module tvb.config.init.alembic.versions.32d4bf9f8ghj_update_db_004 module tvb.config.init.datatypes_registry module tvb.config.init.initializer module tvb.config.init.introspector_registry module tvb.config.init.model_manager module tvb.config.logger.cluster_handler module tvb.config.logger.elasticsearch_handler module tvb.config.profile_settings module tvb.core module tvb.core.adapters.abcadapter module tvb.core.adapters.abcdisplayer module tvb.core.adapters.abcremover module tvb.core.adapters.abcuploader module tvb.core.adapters.arguments_serialisation module tvb.core.adapters.constants module tvb.core.adapters.exceptions module tvb.core.adapters.inputs_processor module tvb.core.code_versions module tvb.core.code_versions.base_classes module tvb.core.code_versions.code_update_manager module tvb.core.code_versions.code_update_scripts module tvb.core.code_versions.code_update_scripts.4455_update_code module tvb.core.code_versions.code_update_scripts.4750_update_code module tvb.core.code_versions.code_update_scripts.5454_update_code module tvb.core.code_versions.code_update_scripts.6093_update_code module tvb.core.code_versions.code_update_scripts.6600_update_code module tvb.core.code_versions.code_update_scripts.6728_update_code module tvb.core.code_versions.code_update_scripts.7350_update_code module tvb.core.code_versions.code_update_scripts.7450_update_code module tvb.core.code_versions.code_update_scripts.9444_update_code module tvb.core.decorators module tvb.core.entities.exportable module tvb.core.entities.file.file_update_scripts module tvb.core.entities.file.file_update_scripts.002_update_files module tvb.core.entities.file.file_update_scripts.003_update_files module tvb.core.entities.file.file_update_scripts.004_update_files module tvb.core.entities.file.file_update_scripts.005_update_files module tvb.core.entities.file.files_update_manager module tvb.core.entities.file.simulator.burst_configuration_h5 module tvb.core.entities.file.simulator.datatype_measure_h5 module tvb.core.entities.file.simulator.simulation_history_h5 module tvb.core.entities.file.simulator.view_model module tvb.core.entities.filters.chain module tvb.core.entities.filters.exceptions module tvb.core.entities.filters.factory module tvb.core.entities.generic_attributes module tvb.core.entities.load module tvb.core.entities.model module tvb.core.entities.model.model_burst module tvb.core.entities.model.model_datatype module tvb.core.entities.model.model_operation module tvb.core.entities.model.model_project module tvb.core.entities.storage module tvb.core.entities.storage.burst_dao module tvb.core.entities.storage.datatype_dao module tvb.core.entities.storage.exceptions module tvb.core.entities.storage.operation_dao module tvb.core.entities.storage.project_dao module tvb.core.entities.storage.root_dao module tvb.core.entities.storage.session_maker module tvb.core.entities.storage.workflow_dao module tvb.core.entities.transient module tvb.core.entities.transient.context_overlay module tvb.core.entities.transient.range_parameter module tvb.core.entities.transient.structure_entities module tvb.core.neocom._h5loader module tvb.core.neocom._registry module tvb.core.neocom.h5 module tvb.core.neotraits._h5accessors module tvb.core.neotraits._h5core module tvb.core.neotraits.db module tvb.core.neotraits.forms module tvb.core.neotraits.h5 module tvb.core.neotraits.spatial_model module tvb.core.neotraits.uploader_view_model module tvb.core.neotraits.view_model module tvb.core.operation_async_launcher module tvb.core.operation_hpc_launcher module tvb.core.project_versions module tvb.core.project_versions.project_update_manager module tvb.core.project_versions.project_update_scripts module tvb.core.project_versions.project_update_scripts.1_update_project module tvb.core.project_versions.project_update_scripts.2_update_project module tvb.core.project_versions.project_update_scripts.3_update_project module tvb.core.removers_factory module tvb.core.services module tvb.core.services.algorithm_service module tvb.core.services.authorization module tvb.core.services.backend_client_factory module tvb.core.services.backend_clients.backend_client module tvb.core.services.backend_clients.cluster_scheduler_client module tvb.core.services.backend_clients.hpc_scheduler_client module tvb.core.services.backend_clients.standalone_client module tvb.core.services.burst_config_serialization module tvb.core.services.burst_service module tvb.core.services.email_sender module tvb.core.services.exceptions module tvb.core.services.figure_service module tvb.core.services.hpc_operation_service module tvb.core.services.import_service module tvb.core.services.operation_service module tvb.core.services.project_service module tvb.core.services.settings_service module tvb.core.services.simulator_service module tvb.core.services.texture_to_json module tvb.core.services.user_service module tvb.core.utils module tvb.datatypes module tvb.datatypes.connectivity module tvb.datatypes.cortex module tvb.datatypes.equations module tvb.datatypes.fcd module tvb.datatypes.graph module tvb.datatypes.local_connectivity module tvb.datatypes.mode_decompositions module tvb.datatypes.patterns module tvb.datatypes.projections module tvb.datatypes.region_mapping module tvb.datatypes.sensors module tvb.datatypes.spectral module tvb.datatypes.structural module tvb.datatypes.surfaces module tvb.datatypes.temporal_correlations module tvb.datatypes.time_series module tvb.datatypes.tracts module tvb.datatypes.volumes module tvb.interfaces module tvb.interfaces.command.demos.datatypes.modify_h5_metadata module tvb.interfaces.command.demos.datatypes.read_from_h5 module tvb.interfaces.command.demos.datatypes.search_and_export module tvb.interfaces.command.demos.datatypes.store_into_h5 module tvb.interfaces.command.demos.importers.brain_tumor_connectivity_importer module tvb.interfaces.command.demos.importers.h5_import module tvb.interfaces.command.demos.importers.new_importer module tvb.interfaces.command.demos.importers.new_importer_launcher module tvb.interfaces.command.demos.operations.run_analyzer module tvb.interfaces.command.demos.operations.run_simulation module tvb.interfaces.command.demos.project.project_export module tvb.interfaces.command.demos.project.project_import module tvb.interfaces.command.lab module tvb.interfaces.rest.bids_monitor.bids_data_builder module tvb.interfaces.rest.bids_monitor.bids_dir_monitor module tvb.interfaces.rest.bids_monitor.launch_bids_monitor module tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test module tvb.interfaces.rest.client.client_decorators module tvb.interfaces.rest.client.main_api module tvb.interfaces.rest.client.tests.rest_test module tvb.interfaces.rest.client.tvb_client module tvb.interfaces.rest.commons.decoders module tvb.interfaces.rest.commons.dtos module tvb.interfaces.rest.commons.exceptions module tvb.interfaces.rest.commons.files_helper module tvb.interfaces.rest.commons.status_codes module tvb.interfaces.rest.commons.strings module tvb.interfaces.rest.server.access_permissions.permissions module tvb.interfaces.rest.server.facades.datatype_facade module tvb.interfaces.rest.server.facades.operation_facade module tvb.interfaces.rest.server.facades.project_facade module tvb.interfaces.rest.server.facades.simulation_facade module tvb.interfaces.rest.server.facades.user_facade module tvb.interfaces.rest.server.request_helper module tvb.interfaces.rest.server.resources.rest_resource module tvb.interfaces.rest.server.rest_api module tvb.interfaces.rest.server.run module tvb.interfaces.web.controllers.autologging module tvb.interfaces.web.controllers.base_controller module tvb.interfaces.web.controllers.burst.base_controller module tvb.interfaces.web.controllers.burst.dynamic_model_controller module tvb.interfaces.web.controllers.burst.exploration_controller module tvb.interfaces.web.controllers.burst.matjax module tvb.interfaces.web.controllers.burst.noise_configuration_controller module tvb.interfaces.web.controllers.burst.region_model_parameters_controller module tvb.interfaces.web.controllers.burst.transfer_vector_controller module tvb.interfaces.web.controllers.common module tvb.interfaces.web.controllers.decorators module tvb.interfaces.web.controllers.flow_controller module tvb.interfaces.web.controllers.help.help_config module tvb.interfaces.web.controllers.help.help_controller module tvb.interfaces.web.controllers.hpc_controller module tvb.interfaces.web.controllers.kube_controller module tvb.interfaces.web.controllers.project.figure_controller module tvb.interfaces.web.controllers.project.project_controller module tvb.interfaces.web.controllers.settings_controller module tvb.interfaces.web.controllers.simulator.monitors_wizard_handler module tvb.interfaces.web.controllers.simulator.simulator_controller module tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules module tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls module tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller module tvb.interfaces.web.controllers.spatial.local_connectivity_controller module tvb.interfaces.web.controllers.spatial.region_stimulus_controller module tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller module tvb.interfaces.web.controllers.spatial.surface_stimulus_controller module tvb.interfaces.web.controllers.users_controller module tvb.interfaces.web.entities.context_model_parameters module tvb.interfaces.web.entities.context_overlay module tvb.interfaces.web.entities.context_selected_adapter module tvb.interfaces.web.entities.context_simulator module tvb.interfaces.web.entities.context_transfer_vector module tvb.interfaces.web.operations_assigner module tvb.interfaces.web.request_handler module tvb.interfaces.web.run module tvb.interfaces.web.run_landing_page module tvb.interfaces.web.structure module tvb.rateML.generatedModels.epileptor module tvb.rateML.generatedModels.kuramoto module tvb.rateML.generatedModels.montbrio module tvb.rateML.generatedModels.oscillator module tvb.rateML.generatedModels.rwongwang module tvb.rateML.run.model_driver module tvb.rateML.run.model_driver_bold module tvb.rateML.run.model_driver_zerlaut module tvb.rateML.run.regular_run module tvb.rateML.XML2model module tvb.simulator.backend module tvb.simulator.backend.base module tvb.simulator.backend.cu module tvb.simulator.backend.nb module tvb.simulator.backend.nb_mpr module tvb.simulator.backend.np module tvb.simulator.backend.ref module tvb.simulator.backend.templates module tvb.simulator.common module tvb.simulator.coupling module tvb.simulator.descriptors module tvb.simulator.history module tvb.simulator.integrators module tvb.simulator.models module tvb.simulator.models.base module tvb.simulator.models.epileptor module tvb.simulator.models.hopfield module tvb.simulator.models.jansen_rit module tvb.simulator.models.larter_breakspear module tvb.simulator.models.linear module tvb.simulator.models.oscillator module tvb.simulator.models.stefanescu_jirsa module tvb.simulator.models.wilson_cowan module tvb.simulator.models.wong_wang module tvb.simulator.monitors module tvb.simulator.noise module tvb.simulator.simulator module tvb.storage.h5.decorators module tvb.storage.h5.encryption.data_encryption_handler module tvb.storage.h5.encryption.encryption_handler module tvb.storage.h5.encryption.import_export_encryption_handler module tvb.storage.h5.file module tvb.storage.h5.file.exceptions module tvb.storage.h5.file.files_helper module tvb.storage.h5.file.hdf5_storage_manager module tvb.storage.h5.file.xml_metadata_handlers module tvb.storage.h5.utils module tvb.storage.kube module tvb.storage.kube.kube_notifier module tvb.storage.storage_interface module TVB_ATTRIBUTE_PREFIX (tvb.storage.h5.file.hdf5_storage_manager.HDF5StorageManager attribute) TVB_BIN_ENV_KEY (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient attribute) TVB_CONFIG_FILE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) (tvb.config.profile_settings.TestSQLiteProfile attribute) tvb_connectivity() (tvb.rateML.run.model_driver.Driver_Setup method) (tvb.rateML.run.model_driver_bold.Driver_Setup method) (tvb.rateML.run.model_driver_zerlaut.Driver_Setup method) (tvb.rateML.run.regular_run.regularRun method) TVB_PROJECT_FILE (tvb.storage.storage_interface.StorageInterface attribute) tvb_python_model() (tvb.rateML.run.regular_run.regularRun method) TVB_STORAGE (tvb.basic.config.profile_settings.LibrarySettingsProfile attribute) TVB_STORAGE_FILE_EXTENSION (tvb.storage.storage_interface.StorageInterface attribute) TVB_USER_HOME (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) TVB_XML_FILE_EXTENSION (tvb.storage.storage_interface.StorageInterface attribute) TVB_ZIP_FILE_EXTENSION (tvb.storage.storage_interface.StorageInterface attribute) TVBClient (class in tvb.interfaces.rest.client.tvb_client) TVBEnum (class in tvb.basic.neotraits._core) TVBException TVBExporter (class in tvb.adapters.exporters.tvb_export) TVBImporter (class in tvb.adapters.uploaders.tvb_importer) TVBImporterForm (class in tvb.adapters.uploaders.tvb_importer) TVBImporterModel (class in tvb.adapters.uploaders.tvb_importer) TVBJSONEncoder (class in tvb.core.utils) TVBLinkedExporter (class in tvb.adapters.exporters.tvb_linked_export) TVBLoader (class in tvb.core.neocom._h5loader) TvbProfile (class in tvb.basic.profile) TvbZip (class in tvb.storage.h5.file.files_helper) TWENTY_FIVE (tvb.adapters.creators.allen_creator.ResolutionOptionsEnum attribute) type (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.transient.structure_entities.StructureNode property) type_ (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.model.model_burst.BurstConfiguration attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.neotraits.db.HasTraitsIndex attribute) TYPE_EEG (tvb.datatypes.sensors.SensorTypesEnum attribute) TYPE_FILE (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_FOLDER (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_INTERNAL (tvb.datatypes.sensors.SensorTypesEnum attribute) TYPE_INVALID (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_MEG (tvb.datatypes.sensors.SensorTypesEnum attribute) TYPES_TO_DEEPCOPY (tvb.basic.neotraits._core.HasTraits attribute) (tvb.basic.neotraits.api.HasTraits attribute) (tvb.simulator.simulator.Simulator attribute)

U

U (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) ui_name (tvb.core.entities.model.model_datatype.MeasurePointsSelection attribute) (tvb.core.entities.model.model_datatype.StoredPSEFilter attribute) UIFilter (class in tvb.core.entities.filters.chain) undirected (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.datatypes.connectivity.Connectivity attribute) UNICORE_ARGS_KEY (tvb.basic.config.settings.HPCSettings attribute) UNICORE_EXE_KEY (tvb.basic.config.settings.HPCSettings attribute) UNICORE_PROJECT_KEY (tvb.basic.config.settings.HPCSettings attribute) UNICORE_RESOURCER_KEY (tvb.basic.config.settings.HPCSettings attribute) UNIQUE_ID_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) UniqueUsername (class in tvb.interfaces.web.controllers.users_controller) unmapped_indices() (tvb.datatypes.connectivity.Connectivity method) unmixing_matrix (tvb.datatypes.mode_decompositions.IndependentComponents attribute) unpack_zip() (tvb.storage.h5.file.files_helper.TvbZip method) (tvb.storage.storage_interface.StorageInterface method) UnsupportedFileStorageException update() (in module tvb.core.code_versions.code_update_scripts.4455_update_code) (in module tvb.core.code_versions.code_update_scripts.4750_update_code) (in module tvb.core.code_versions.code_update_scripts.5454_update_code) (in module tvb.core.code_versions.code_update_scripts.6093_update_code) (in module tvb.core.code_versions.code_update_scripts.6600_update_code) (in module tvb.core.code_versions.code_update_scripts.6728_update_code) (in module tvb.core.code_versions.code_update_scripts.7350_update_code) (in module tvb.core.code_versions.code_update_scripts.7450_update_code) (in module tvb.core.code_versions.code_update_scripts.9444_update_code) (in module tvb.core.entities.file.file_update_scripts.002_update_files) (in module tvb.core.entities.file.file_update_scripts.003_update_files) (in module tvb.core.entities.file.file_update_scripts.004_update_files) (in module tvb.core.entities.file.file_update_scripts.005_update_files) (in module tvb.core.project_versions.project_update_scripts.1_update_project) (in module tvb.core.project_versions.project_update_scripts.2_update_project) (in module tvb.core.project_versions.project_update_scripts.3_update_project) (tvb.interfaces.rest.commons.dtos.BaseDto method) (tvb.simulator.history.BaseHistory method) (tvb.simulator.history.DenseHistory method) update_auth_token() (tvb.interfaces.rest.client.tvb_client.TVBClient method) update_axis() (tvb.adapters.visualizers.phase_plane_interactive.PhaseLineD3 method) (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) update_burst_status() (tvb.core.services.burst_service.BurstService method) update_datatype_groups() (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient method) update_db_with_results() (tvb.core.services.backend_clients.hpc_scheduler_client.HPCSchedulerClient static method) update_derived_parameters() (tvb.simulator.models.base.Model method) (tvb.simulator.models.jansen_rit.ZetterbergJansen method) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo method), [1] (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose method), [1] update_dictionary() (in module tvb.core.removers_factory) update_history_status() (tvb.core.services.burst_service.BurstService method) update_integrator_clamping() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) update_local_connectivity_metadata() (in module tvb.interfaces.command.demos.datatypes.modify_h5_metadata) update_localconnectivity_metadata() (in module tvb.core.entities.file.file_update_scripts.003_update_files) update_metadata() (tvb.core.services.project_service.ProjectService method) update_monitor() (tvb.interfaces.web.controllers.simulator.monitors_wizard_handler.MonitorsWizardHandler static method) update_operations_count() (tvb.interfaces.web.controllers.base_controller.BaseController method) update_scaling() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) UPDATE_SCRIPTS_SUFFIX (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) update_simulation_fields() (tvb.core.services.burst_service.BurstService static method) update_state_variables_after_integration() (tvb.simulator.models.base.Model method) update_state_variables_before_integration() (tvb.simulator.models.base.Model method) update_status() (tvb.interfaces.web.controllers.hpc_controller.HPCController method) update_tokens() (tvb.interfaces.rest.client.main_api.MainApi method) update_written_by() (in module tvb.interfaces.command.demos.datatypes.modify_h5_metadata) UpdateManager (class in tvb.core.code_versions.base_classes) updatemetadata() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) upgrade() (in module tvb.config.init.alembic.versions.32d4bf9f8ghj_update_db_004) upgrade_file() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) upload_to_tvb() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) UploadAlgorithmCategoryConfig (class in tvb.config.algorithm_categories) uploaded (tvb.adapters.uploaders.bids_importer.BIDSImporterModel attribute) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporterModel attribute) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporterModel attribute) uploader_thread() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) UploaderViewModel (class in tvb.core.neotraits.uploader_view_model) url2path() (in module tvb.core.utils) URLGenerator (class in tvb.core.adapters.abcdisplayer) usable (tvb.datatypes.sensors.Sensors attribute) USEFUL_URLS (tvb.interfaces.rest.commons.strings.RestLink attribute) User (class in tvb.core.entities.model.model_project) user (tvb.core.entities.model.model_operation.Operation attribute) (tvb.core.entities.model.model_project.UserPreferences attribute) user_environment_execution() (in module tvb.core.decorators) user_group (tvb.core.entities.model.model_operation.Operation attribute) USER_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) USER_ROLES (tvb.core.services.user_service.UserService attribute) user_tag_1 (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) user_tag_2 (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute)

user_tag_3 (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) user_tag_4 (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) user_tag_5 (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) User_to_Project (class in tvb.core.entities.model.model_project) UserController (class in tvb.interfaces.web.controllers.users_controller) UserDto (class in tvb.interfaces.rest.commons.dtos) UserFacade (class in tvb.interfaces.rest.server.facades.user_facade) usermanagement() (tvb.interfaces.web.controllers.users_controller.UserController method) username (tvb.core.entities.model.model_project.User attribute) USERNAME (tvb.interfaces.rest.commons.strings.LinkPlaceholder attribute) UsernameException UserPreferences (class in tvb.core.entities.model.model_project) USERS (tvb.interfaces.rest.commons.strings.RestNamespace attribute) users_project_usage (tvb.storage.h5.encryption.data_encryption_handler.DataEncryptionHandler attribute) UserService (class in tvb.core.services.user_service) UserSessionStrField (class in tvb.core.neotraits.forms) using_template() (in module tvb.interfaces.web.controllers.decorators) Uuid (class in tvb.core.neotraits._h5accessors)

V

V0 (tvb.analyzers.fmri_balloon.BalloonModel attribute) v0 (tvb.simulator.models.jansen_rit.JansenRit attribute) valid_for_simulations (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.datatypes.surfaces.Surface attribute) validate() (tvb.basic.neotraits._core.HasTraits method) (tvb.basic.neotraits.api.HasTraits method) (tvb.core.neotraits.forms.Field method) (tvb.core.neotraits.forms.Form method) (tvb.core.neotraits.forms.FormField method) (tvb.datatypes.surfaces.Surface method) (tvb.interfaces.web.controllers.users_controller.UserController method) (tvb.simulator.simulator.Simulator method) validate_and_transpose_source() (in module tvb.analyzers.ica_algorithm) validate_first_fragment() (tvb.core.services.simulator_service.SimulatorService static method) validate_topology_for_simulations() (tvb.datatypes.surfaces.Surface method) validate_user() (tvb.core.services.user_service.UserService method) validated (tvb.core.entities.model.model_project.User attribute) ValidationException ValidationResult (class in tvb.datatypes.surfaces) value (tvb.adapters.datatypes.h5.mapped_value_h5.ValueWrapper property) (tvb.basic.neotraits._core.TupleEnum property) (tvb.core.entities.model.model_project.UserPreferences attribute) (tvb.core.neotraits.forms.ArrayField property) (tvb.core.neotraits.forms.DynamicSelectField property) (tvb.core.neotraits.forms.Field property) (tvb.core.neotraits.forms.Option attribute) (tvb.core.neotraits.forms.SelectField property) (tvb.simulator.descriptors.Final.State attribute) ValueWrapper (class in tvb.adapters.datatypes.h5.mapped_value_h5) ValueWrapperH5 (class in tvb.adapters.datatypes.h5.mapped_value_h5) ValueWrapperIndex (class in tvb.adapters.datatypes.db.mapped_value) VARIABLE_ORDER_ADAMS (tvb.core.entities.file.simulator.view_model.IntegratorViewModelsEnum attribute) variables_labels (tvb.datatypes.time_series.TimeSeries property) variables_of_interest (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.rateML.generatedModels.kuramoto.KuramotoT attribute) (tvb.rateML.generatedModels.montbrio.MontbrioT attribute) (tvb.rateML.generatedModels.oscillator.OscillatorT attribute) (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) (tvb.simulator.models.base.Model attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) (tvb.simulator.models.hopfield.Hopfield attribute) (tvb.simulator.models.jansen_rit.JansenRit attribute) (tvb.simulator.models.jansen_rit.ZetterbergJansen attribute) (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) (tvb.simulator.models.linear.Linear attribute) (tvb.simulator.models.oscillator.Generic2dOscillator attribute) (tvb.simulator.models.oscillator.Kuramoto attribute) (tvb.simulator.models.oscillator.SupHopf attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo attribute) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) (tvb.simulator.models.wilson_cowan.WilsonCowan attribute) (tvb.simulator.models.wong_wang.ReducedWongWang attribute) (tvb.simulator.monitors.AfferentCoupling attribute) (tvb.simulator.monitors.Monitor attribute) (tvb.simulator.monitors.Raw attribute) VCa (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) version (tvb.core.entities.model.model_project.Project attribute) VersionSettings (class in tvb.basic.config.settings) vertex_neighbours (tvb.datatypes.surfaces.Surface property) vertex_normals (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.surfaces.Surface attribute) vertex_triangles (tvb.datatypes.surfaces.Surface property) vertices (tvb.datatypes.cortex.Cortex property) (tvb.datatypes.surfaces.Surface attribute) (tvb.datatypes.tracts.Tracts attribute) VERTICES_FILE (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) VERTICES_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) view_model_disk_size (tvb.core.entities.model.model_operation.Operation attribute) view_model_gid (tvb.core.entities.model.model_operation.Operation attribute) view_model_to_has_traits() (tvb.core.adapters.abcadapter.ABCAdapter method) view_stimulus() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) ViewAlgorithmCategoryConfig (class in tvb.config.algorithm_categories) viewall() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) VIEWERS_COLOR_SCHEME (tvb.core.entities.model.model_project.UserPreferences attribute)

ViewModel (class in tvb.core.neotraits.view_model) ViewModelH5 (class in tvb.core.neotraits._h5core) ViewModelLoader (class in tvb.core.neocom._h5loader) viewoperations() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) visible (tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex attribute) (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) (tvb.adapters.datatypes.db.fcd.FcdIndex attribute) (tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex attribute) (tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex attribute) (tvb.adapters.datatypes.db.graph.CovarianceIndex attribute) (tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex attribute) (tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex attribute) (tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex attribute) (tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex attribute) (tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliRegionIndex attribute) (tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex attribute) (tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex attribute) (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.sensors.SensorsIndex attribute) (tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex attribute) (tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.surface.SurfaceIndex attribute) (tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.adapters.datatypes.db.tracts.TractsIndex attribute) (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.core.entities.generic_attributes.GenericAttributes attribute) (tvb.core.entities.model.model_datatype.DataType attribute) (tvb.core.entities.model.model_datatype.DataTypeGroup attribute) (tvb.core.entities.model.model_datatype.DataTypeMatrix attribute) (tvb.core.entities.model.model_operation.Operation attribute) VISUALIZERS_ONLINE_HELP_SHORTCUTS (tvb.interfaces.web.structure.WebStructure attribute) VISUALIZERS_ROOT (tvb.basic.config.settings.WebSettings attribute) (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) VK (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) VL (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) VNa (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute) VODE (class in tvb.simulator.integrators) VODEStochastic (class in tvb.simulator.integrators) VODEStochasticViewModel (class in tvb.core.entities.file.simulator.view_model) VODEViewModel (class in tvb.core.entities.file.simulator.view_model) voi (tvb.simulator.monitors.Monitor attribute) vol_thresh (tvb.adapters.creators.allen_creator.AllenConnectModel attribute) VOLTERRA_KERNEL (tvb.adapters.forms.equation_forms.BoldMonitorEquationsEnum attribute) Volume (class in tvb.datatypes.volumes) volume (tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex attribute) (tvb.datatypes.patterns.SpatialPatternVolume attribute) (tvb.datatypes.region_mapping.RegionVolumeMapping attribute) (tvb.datatypes.structural.StructuralMRI attribute) (tvb.datatypes.time_series.TimeSeriesVolume attribute) VolumeH5 (class in tvb.adapters.datatypes.h5.volumes_h5) VolumeIndex (class in tvb.adapters.datatypes.db.volume) VolumetricDataMixin (class in tvb.adapters.datatypes.h5.structural_h5) VolumeVisualizerForm (class in tvb.adapters.visualizers.region_volume_mapping) VolumeVisualizerModel (class in tvb.adapters.visualizers.region_volume_mapping) voxel_size (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.datatypes.volumes.Volume attribute) voxel_unit (tvb.adapters.datatypes.db.volume.VolumeIndex attribute) (tvb.datatypes.volumes.Volume attribute) VT (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute)

W

w (tvb.simulator.models.wong_wang.ReducedWongWang attribute) w_E (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) w_I (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) w_plus (tvb.rateML.generatedModels.rwongwang.RwongwangT attribute) wait_to_finish() (in module tvb.interfaces.command.lab) was_processing (tvb.storage.h5.encryption.data_encryption_handler.FoldersQueueConsumer attribute) watchdog_thread() (tvb.interfaces.rest.bids_monitor.bids_dir_monitor.BIDSDirWatcher method) WaveletAdapterModel (class in tvb.adapters.analyzers.wavelet_adapter) WaveletCoefficients (class in tvb.datatypes.spectral) WaveletCoefficientsH5 (class in tvb.adapters.datatypes.h5.spectral_h5) WaveletCoefficientsIndex (class in tvb.adapters.datatypes.db.spectral) WaveletSpectrogramVisualizer (class in tvb.adapters.visualizers.wavelet_spectrogram) WaveletSpectrogramVisualizerForm (class in tvb.adapters.visualizers.wavelet_spectrogram) WaveletSpectrogramVisualizerModel (class in tvb.adapters.visualizers.wavelet_spectrogram) WEB_LOG_FILE (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute) WEB_PROFILE (tvb.basic.profile.TvbProfile attribute) WEB_SECTION_TITLES (tvb.interfaces.web.structure.WebStructure attribute) WEB_SUBSECTION_TITLES (tvb.interfaces.web.structure.WebStructure attribute) WebAdminSettings (class in tvb.basic.config.settings) WebSettings (class in tvb.basic.config.settings) WebSettingsProfile (class in tvb.config.profile_settings) WebStructure (class in tvb.interfaces.web.structure) weight (tvb.datatypes.patterns.StimuliRegion attribute) weight_array (tvb.datatypes.patterns.StimuliRegion property) WEIGHT_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) weighting (tvb.adapters.creators.allen_creator.AllenConnectModel attribute) (tvb.adapters.datatypes.db.structural.StructuralMRIIndex attribute) (tvb.datatypes.structural.StructuralMRI attribute) WEIGHTS (tvb.adapters.creators.siibra_base.Component2Modality attribute) weights (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterModel attribute) (tvb.datatypes.connectivity.Connectivity attribute) (tvb.datatypes.mode_decompositions.PrincipalComponents attribute) (tvb.simulator.history.BaseHistory attribute) weights_delimiter (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporterModel attribute) WEIGHTS_FILE (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute) WEIGHTS_JSON_FILE (tvb.adapters.uploaders.bids_importer.BIDSImporter attribute) weights_max (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) weights_mean (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) weights_min (tvb.adapters.datatypes.db.connectivity.ConnectivityIndex attribute) WeightsOptionsEnum (class in tvb.adapters.creators.allen_creator) white() (tvb.simulator.noise.Noise method), [1] WHITE_MATTER_SURFACE (tvb.datatypes.surfaces.SurfaceTypesEnum attribute) WhiteMatterSurface (class in tvb.datatypes.surfaces)

WILSON_COWAN (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) WilsonCowan (class in tvb.simulator.models.wilson_cowan) WilsonCowanModelForm (class in tvb.adapters.forms.model_forms) window_function (tvb.adapters.analyzers.fourier_adapter.FFTAdapterModel attribute) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) windowing_function (tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex attribute) (tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex attribute) (tvb.datatypes.spectral.ComplexCoherenceSpectrum attribute) (tvb.datatypes.spectral.FourierSpectrum attribute) WindowingFunctionsEnum (class in tvb.datatypes.spectral) WorkflowDAO (class in tvb.core.entities.storage.workflow_dao) Workspace (class in tvb.simulator.descriptors) write() (tvb.adapters.uploaders.obj.parser.ObjWriter method) write_config_data() (tvb.basic.config.stored.SettingsManager method) write_data_slice() (tvb.adapters.datatypes.h5.graph_h5.CovarianceH5 method) (tvb.adapters.datatypes.h5.mode_decompositions_h5.IndependentComponentsH5 method) (tvb.adapters.datatypes.h5.mode_decompositions_h5.PrincipalComponentsH5 method) (tvb.adapters.datatypes.h5.spectral_h5.CoherenceSpectrumH5 method) (tvb.adapters.datatypes.h5.spectral_h5.ComplexCoherenceSpectrumH5 method) (tvb.adapters.datatypes.h5.spectral_h5.FourierSpectrumH5 method) (tvb.adapters.datatypes.h5.spectral_h5.WaveletCoefficientsH5 method) (tvb.adapters.datatypes.h5.structural_h5.VolumetricDataMixin method) (tvb.adapters.datatypes.h5.temporal_correlations_h5.CrossCorrelationH5 method) (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) write_data_slice_on_grow_dimension() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) write_image_metadata() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) write_metadata_in_xml() (tvb.storage.h5.file.xml_metadata_handlers.XMLWriter method) (tvb.storage.storage_interface.StorageInterface method) write_model_file() (tvb.rateML.XML2model.RateML method) write_model_parameters() (tvb.core.services.burst_config_serialization.SerializationManager method) write_noise_parameters() (tvb.core.services.burst_config_serialization.SerializationManager method) write_output() (tvb.rateML.run.model_driver.Driver_Execute method) (tvb.rateML.run.model_driver_bold.Driver_Execute method) (tvb.rateML.run.model_driver_zerlaut.Driver_Execute method) write_project_metadata() (tvb.storage.h5.file.files_helper.FilesHelper method) (tvb.storage.storage_interface.StorageInterface method) write_project_metadata_from_dict() (tvb.storage.h5.file.files_helper.FilesHelper static method) (tvb.storage.storage_interface.StorageInterface method) write_time_slice() (tvb.adapters.datatypes.h5.time_series_h5.TimeSeriesH5 method) write_vertices_slice() (tvb.adapters.datatypes.h5.tracts_h5.TractsH5 method) write_zip_folder() (tvb.storage.h5.file.files_helper.TvbZip method) (tvb.storage.storage_interface.StorageInterface method) write_zip_folders() (tvb.storage.h5.file.files_helper.TvbZip method)

X

x0 (tvb.rateML.generatedModels.epileptor.EpileptorT attribute) (tvb.simulator.models.epileptor.Epileptor attribute) (tvb.simulator.models.epileptor.Epileptor2D attribute) XMLParser (class in tvb.adapters.uploaders.brco.parser)

XmlParserException XMLReader (class in tvb.storage.h5.file.xml_metadata_handlers) XMLWriter (class in tvb.storage.h5.file.xml_metadata_handlers) xo (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose attribute) XSD_validate_XML() (tvb.rateML.XML2model.RateML method)

Z

ZERLAUT_FIRST_ORDER (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) ZERLAUT_SECOND_ORDER (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) ZerlautAdaptationFirstOrderModelForm (class in tvb.adapters.forms.model_forms) ZerlautAdaptationSecondOrderModelForm (class in tvb.adapters.forms.model_forms) zero_based_triangles (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporterModel attribute) (tvb.datatypes.surfaces.Surface attribute) zeropad (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceModel attribute) ZETTERBERG_JANSEN (tvb.adapters.forms.model_forms.ModelsEnum attribute) (tvb.simulator.models.ModelsEnum attribute) ZetterbergJansen (class in tvb.simulator.models.jansen_rit)

ZetterbergJansenModelForm (class in tvb.adapters.forms.model_forms) zip_directory() (in module tvb.simulator.common) ZIPConnectivityImporter (class in tvb.adapters.uploaders.zip_connectivity_importer) ZIPConnectivityImporterForm (class in tvb.adapters.uploaders.zip_connectivity_importer) ZIPConnectivityImporterModel (class in tvb.adapters.uploaders.zip_connectivity_importer) ZipReader (class in tvb.basic.readers) ZIPSurfaceImporter (class in tvb.adapters.uploaders.zip_surface_importer) ZIPSurfaceImporterForm (class in tvb.adapters.uploaders.zip_surface_importer) ZIPSurfaceImporterModel (class in tvb.adapters.uploaders.zip_surface_importer) ZipSurfaceParser (class in tvb.adapters.uploaders.zip_surface.parser) ZipTxtTractsImporter (class in tvb.adapters.uploaders.tract_importer) ZT (tvb.simulator.models.larter_breakspear.LarterBreakspear attribute)