tvb Package¶
We want tvb package to extend over at least 3 folders: web framework, scientific library and storage.
Subpackages¶
adaptersPackage- Subpackages
analyzersPackagebct_adaptersbct_centrality_adaptersbct_clustering_adaptersbct_degree_adapterscross_correlation_adapterCrossCorrelateAdapterCrossCorrelateAdapterFormCrossCorrelateAdapterModelPearsonCorrelationCoefficientAdapterPearsonCorrelationCoefficientAdapter.configure()PearsonCorrelationCoefficientAdapter.get_form_class()PearsonCorrelationCoefficientAdapter.get_output()PearsonCorrelationCoefficientAdapter.get_required_disk_size()PearsonCorrelationCoefficientAdapter.get_required_memory_size()PearsonCorrelationCoefficientAdapter.launch()
PearsonCorrelationCoefficientAdapterFormPearsonCorrelationCoefficientAdapterModel
fcd_adapterFCDAdapterFormFCDAdapterModelFunctionalConnectivityDynamicsAdapterFunctionalConnectivityDynamicsAdapter.configure()FunctionalConnectivityDynamicsAdapter.get_form_class()FunctionalConnectivityDynamicsAdapter.get_output()FunctionalConnectivityDynamicsAdapter.get_required_disk_size()FunctionalConnectivityDynamicsAdapter.get_required_memory_size()FunctionalConnectivityDynamicsAdapter.launch()
fmri_balloon_adapterfourier_adapterica_adaptermetrics_group_timeseriesnode_coherence_adapternode_complex_coherence_adapterNodeComplexCoherenceAdapterNodeComplexCoherenceAdapter.configure()NodeComplexCoherenceAdapter.get_form_class()NodeComplexCoherenceAdapter.get_output()NodeComplexCoherenceAdapter.get_required_disk_size()NodeComplexCoherenceAdapter.get_required_memory_size()NodeComplexCoherenceAdapter.launch()NodeComplexCoherenceAdapter.result_size()
NodeComplexCoherenceFormNodeComplexCoherenceModelNodeComplexCoherenceModel.average_segmentsNodeComplexCoherenceModel.detrend_tsNodeComplexCoherenceModel.epoch_lengthNodeComplexCoherenceModel.max_freqNodeComplexCoherenceModel.npatNodeComplexCoherenceModel.segment_lengthNodeComplexCoherenceModel.segment_shiftNodeComplexCoherenceModel.subtract_epoch_averageNodeComplexCoherenceModel.time_seriesNodeComplexCoherenceModel.window_functionNodeComplexCoherenceModel.zeropad
node_covariance_adapterpca_adapterwavelet_adapterContinuousWaveletTransformAdapterContinuousWaveletTransformAdapter.configure()ContinuousWaveletTransformAdapter.get_form_class()ContinuousWaveletTransformAdapter.get_output()ContinuousWaveletTransformAdapter.get_required_disk_size()ContinuousWaveletTransformAdapter.get_required_memory_size()ContinuousWaveletTransformAdapter.launch()ContinuousWaveletTransformAdapter.result_shape()ContinuousWaveletTransformAdapter.result_size()
ContinuousWaveletTransformAdapterFormRangeFormWaveletAdapterModel
creatorsPackageallen_creatorAllenConnectModelAllenConnectomeBuilderAllenConnectomeBuilderFormResolutionOptionsEnumWeightsOptionsEnumareas_volume_threshold()construct_centres()construct_structural_conn()construct_tract_lengths()create_file_order()dictionary_builder()download_an_construct_matrix()infected_threshold()mouse_brain_visualizer()parents_and_grandparents_finder()pms_cleaner()rotate_reference()
connectivity_creatorlocal_connectivity_creatorLocalConnectivityCreatorLocalConnectivityCreator.KEY_CUTOFFLocalConnectivityCreator.KEY_DISPLAY_NAMELocalConnectivityCreator.KEY_EQUATIONLocalConnectivityCreator.KEY_SURFACELocalConnectivityCreator.get_form_class()LocalConnectivityCreator.get_output()LocalConnectivityCreator.get_required_disk_size()LocalConnectivityCreator.get_required_memory_size()LocalConnectivityCreator.launch()
LocalConnectivityCreatorFormLocalConnectivityCreatorForm.NAME_EQUATION_PARAMS_DIVLocalConnectivityCreatorForm.fill_from_trait()LocalConnectivityCreatorForm.get_filters()LocalConnectivityCreatorForm.get_input_name()LocalConnectivityCreatorForm.get_rendering_dict()LocalConnectivityCreatorForm.get_required_datatype()LocalConnectivityCreatorForm.get_view_model()
LocalConnectivityCreatorModelLocalConnectivitySelectorForm
siibra_baseComponent2Modalitycheck_atlas_parcellation_compatible()create_tvb_connectivity_measure()create_tvb_structural_connectivity()get_atlases_for_parcellation()get_cohorts_for_sc()get_connectivities_from_kg()get_connectivity_matrix()get_connectivity_measures_from_kg()get_functional_connectivity_matrix()get_hemispheres_for_regions()get_parcellations_for_atlas()get_regions_positions()get_structural_connectivities_from_kg()init_siibra_params()parse_subject_ids()
siibra_creatorstimulus_creatorRegionStimulusCreatorRegionStimulusCreatorFormRegionStimulusCreatorForm.NAME_TEMPORAL_PARAMS_DIVRegionStimulusCreatorForm.default_temporalRegionStimulusCreatorForm.fill_from_trait()RegionStimulusCreatorForm.get_filters()RegionStimulusCreatorForm.get_input_name()RegionStimulusCreatorForm.get_rendering_dict()RegionStimulusCreatorForm.get_required_datatype()RegionStimulusCreatorForm.get_view_model()
RegionStimulusCreatorModelStimulusRegionSelectorFormStimulusSurfaceSelectorFormSurfaceStimulusCreatorSurfaceStimulusCreator.KEY_FOCAL_POINTS_TRIANGLESSurfaceStimulusCreator.KEY_SPATIALSurfaceStimulusCreator.KEY_SURFACESurfaceStimulusCreator.KEY_TEMPORALSurfaceStimulusCreator.get_form_class()SurfaceStimulusCreator.get_output()SurfaceStimulusCreator.get_required_disk_size()SurfaceStimulusCreator.get_required_memory_size()SurfaceStimulusCreator.launch()SurfaceStimulusCreator.launch_modeSurfaceStimulusCreator.prepare_stimuli_surface_from_view_model()
SurfaceStimulusCreatorFormSurfaceStimulusCreatorForm.NAME_SPATIAL_PARAMS_DIVSurfaceStimulusCreatorForm.NAME_TEMPORAL_PARAMS_DIVSurfaceStimulusCreatorForm.default_spatialSurfaceStimulusCreatorForm.default_temporalSurfaceStimulusCreatorForm.fill_from_trait()SurfaceStimulusCreatorForm.get_filters()SurfaceStimulusCreatorForm.get_input_name()SurfaceStimulusCreatorForm.get_rendering_dict()SurfaceStimulusCreatorForm.get_required_datatype()SurfaceStimulusCreatorForm.get_view_model()
SurfaceStimulusCreatorModel
datatypesPackage- Subpackages
dbPackageannotationAnnotationTermConnectivityAnnotationsIndexConnectivityAnnotationsIndex.annotations_lengthConnectivityAnnotationsIndex.connectivityConnectivityAnnotationsIndex.create_dateConnectivityAnnotationsIndex.disk_sizeConnectivityAnnotationsIndex.fill_from_has_traits()ConnectivityAnnotationsIndex.fk_connectivity_gidConnectivityAnnotationsIndex.fk_datatype_groupConnectivityAnnotationsIndex.fk_from_operationConnectivityAnnotationsIndex.fk_parent_burstConnectivityAnnotationsIndex.gidConnectivityAnnotationsIndex.idConnectivityAnnotationsIndex.invalidConnectivityAnnotationsIndex.is_nanConnectivityAnnotationsIndex.moduleConnectivityAnnotationsIndex.parent_operationConnectivityAnnotationsIndex.stateConnectivityAnnotationsIndex.subjectConnectivityAnnotationsIndex.titleConnectivityAnnotationsIndex.typeConnectivityAnnotationsIndex.type_ConnectivityAnnotationsIndex.user_tag_1ConnectivityAnnotationsIndex.user_tag_2ConnectivityAnnotationsIndex.user_tag_3ConnectivityAnnotationsIndex.user_tag_4ConnectivityAnnotationsIndex.user_tag_5ConnectivityAnnotationsIndex.visible
connectivityConnectivityIndexConnectivityIndex.accepted_filters()ConnectivityIndex.create_dateConnectivityIndex.disk_sizeConnectivityIndex.display_nameConnectivityIndex.fill_from_has_traits()ConnectivityIndex.fk_datatype_groupConnectivityIndex.fk_from_operationConnectivityIndex.fk_parent_burstConnectivityIndex.gidConnectivityIndex.has_cortical_maskConnectivityIndex.has_hemispheres_maskConnectivityIndex.idConnectivityIndex.invalidConnectivityIndex.is_nanConnectivityIndex.moduleConnectivityIndex.number_of_connectionsConnectivityIndex.number_of_regionsConnectivityIndex.parent_operationConnectivityIndex.stateConnectivityIndex.subjectConnectivityIndex.titleConnectivityIndex.tract_lengths_maxConnectivityIndex.tract_lengths_meanConnectivityIndex.tract_lengths_minConnectivityIndex.typeConnectivityIndex.type_ConnectivityIndex.undirectedConnectivityIndex.user_tag_1ConnectivityIndex.user_tag_2ConnectivityIndex.user_tag_3ConnectivityIndex.user_tag_4ConnectivityIndex.user_tag_5ConnectivityIndex.visibleConnectivityIndex.weights_maxConnectivityIndex.weights_meanConnectivityIndex.weights_min
fcdFcdIndexFcdIndex.array_data_maxFcdIndex.array_data_meanFcdIndex.array_data_minFcdIndex.array_has_complexFcdIndex.array_is_finiteFcdIndex.create_dateFcdIndex.disk_sizeFcdIndex.fill_from_has_traits()FcdIndex.fk_datatype_groupFcdIndex.fk_from_operationFcdIndex.fk_parent_burstFcdIndex.fk_source_gidFcdIndex.get_extra_info()FcdIndex.gidFcdIndex.has_valid_time_seriesFcdIndex.has_volume_mappingFcdIndex.idFcdIndex.invalidFcdIndex.is_nanFcdIndex.labels_orderingFcdIndex.moduleFcdIndex.ndimFcdIndex.parent_operationFcdIndex.shapeFcdIndex.sourceFcdIndex.stateFcdIndex.subjectFcdIndex.subtypeFcdIndex.titleFcdIndex.typeFcdIndex.type_FcdIndex.user_tag_1FcdIndex.user_tag_2FcdIndex.user_tag_3FcdIndex.user_tag_4FcdIndex.user_tag_5FcdIndex.visible
graphConnectivityMeasureIndexConnectivityMeasureIndex.array_data_maxConnectivityMeasureIndex.array_data_meanConnectivityMeasureIndex.array_data_minConnectivityMeasureIndex.array_has_complexConnectivityMeasureIndex.array_is_finiteConnectivityMeasureIndex.connectivityConnectivityMeasureIndex.create_dateConnectivityMeasureIndex.disk_sizeConnectivityMeasureIndex.display_nameConnectivityMeasureIndex.fill_from_h5()ConnectivityMeasureIndex.fill_from_has_traits()ConnectivityMeasureIndex.fk_connectivity_gidConnectivityMeasureIndex.fk_datatype_groupConnectivityMeasureIndex.fk_from_operationConnectivityMeasureIndex.fk_parent_burstConnectivityMeasureIndex.gidConnectivityMeasureIndex.has_surface_mappingConnectivityMeasureIndex.has_valid_time_seriesConnectivityMeasureIndex.has_volume_mappingConnectivityMeasureIndex.idConnectivityMeasureIndex.invalidConnectivityMeasureIndex.is_nanConnectivityMeasureIndex.moduleConnectivityMeasureIndex.ndimConnectivityMeasureIndex.parent_operationConnectivityMeasureIndex.shapeConnectivityMeasureIndex.stateConnectivityMeasureIndex.subjectConnectivityMeasureIndex.subtypeConnectivityMeasureIndex.titleConnectivityMeasureIndex.typeConnectivityMeasureIndex.type_ConnectivityMeasureIndex.user_tag_1ConnectivityMeasureIndex.user_tag_2ConnectivityMeasureIndex.user_tag_3ConnectivityMeasureIndex.user_tag_4ConnectivityMeasureIndex.user_tag_5ConnectivityMeasureIndex.visible
CorrelationCoefficientsIndexCorrelationCoefficientsIndex.array_data_maxCorrelationCoefficientsIndex.array_data_meanCorrelationCoefficientsIndex.array_data_minCorrelationCoefficientsIndex.array_has_complexCorrelationCoefficientsIndex.array_is_finiteCorrelationCoefficientsIndex.create_dateCorrelationCoefficientsIndex.disk_sizeCorrelationCoefficientsIndex.fill_from_has_traits()CorrelationCoefficientsIndex.fk_datatype_groupCorrelationCoefficientsIndex.fk_from_operationCorrelationCoefficientsIndex.fk_parent_burstCorrelationCoefficientsIndex.fk_source_gidCorrelationCoefficientsIndex.get_extra_info()CorrelationCoefficientsIndex.gidCorrelationCoefficientsIndex.has_valid_time_seriesCorrelationCoefficientsIndex.has_volume_mappingCorrelationCoefficientsIndex.idCorrelationCoefficientsIndex.invalidCorrelationCoefficientsIndex.is_nanCorrelationCoefficientsIndex.labels_orderingCorrelationCoefficientsIndex.moduleCorrelationCoefficientsIndex.ndimCorrelationCoefficientsIndex.parent_operationCorrelationCoefficientsIndex.shapeCorrelationCoefficientsIndex.sourceCorrelationCoefficientsIndex.stateCorrelationCoefficientsIndex.subjectCorrelationCoefficientsIndex.subtypeCorrelationCoefficientsIndex.titleCorrelationCoefficientsIndex.typeCorrelationCoefficientsIndex.type_CorrelationCoefficientsIndex.user_tag_1CorrelationCoefficientsIndex.user_tag_2CorrelationCoefficientsIndex.user_tag_3CorrelationCoefficientsIndex.user_tag_4CorrelationCoefficientsIndex.user_tag_5CorrelationCoefficientsIndex.visible
CovarianceIndexCovarianceIndex.array_data_maxCovarianceIndex.array_data_meanCovarianceIndex.array_data_minCovarianceIndex.array_has_complexCovarianceIndex.array_is_finiteCovarianceIndex.create_dateCovarianceIndex.disk_sizeCovarianceIndex.fill_from_has_traits()CovarianceIndex.fk_datatype_groupCovarianceIndex.fk_from_operationCovarianceIndex.fk_parent_burstCovarianceIndex.fk_source_gidCovarianceIndex.gidCovarianceIndex.has_valid_time_seriesCovarianceIndex.has_volume_mappingCovarianceIndex.idCovarianceIndex.invalidCovarianceIndex.is_nanCovarianceIndex.moduleCovarianceIndex.ndimCovarianceIndex.parent_operationCovarianceIndex.shapeCovarianceIndex.sourceCovarianceIndex.stateCovarianceIndex.subjectCovarianceIndex.subtypeCovarianceIndex.titleCovarianceIndex.typeCovarianceIndex.type_CovarianceIndex.user_tag_1CovarianceIndex.user_tag_2CovarianceIndex.user_tag_3CovarianceIndex.user_tag_4CovarianceIndex.user_tag_5CovarianceIndex.visible
local_connectivityLocalConnectivityIndexLocalConnectivityIndex.create_dateLocalConnectivityIndex.disk_sizeLocalConnectivityIndex.fill_from_has_traits()LocalConnectivityIndex.fk_datatype_groupLocalConnectivityIndex.fk_from_operationLocalConnectivityIndex.fk_parent_burstLocalConnectivityIndex.fk_surface_gidLocalConnectivityIndex.gidLocalConnectivityIndex.idLocalConnectivityIndex.invalidLocalConnectivityIndex.is_nanLocalConnectivityIndex.matrix_non_zero_maxLocalConnectivityIndex.matrix_non_zero_meanLocalConnectivityIndex.matrix_non_zero_minLocalConnectivityIndex.moduleLocalConnectivityIndex.parent_operationLocalConnectivityIndex.stateLocalConnectivityIndex.subjectLocalConnectivityIndex.surfaceLocalConnectivityIndex.titleLocalConnectivityIndex.typeLocalConnectivityIndex.type_LocalConnectivityIndex.user_tag_1LocalConnectivityIndex.user_tag_2LocalConnectivityIndex.user_tag_3LocalConnectivityIndex.user_tag_4LocalConnectivityIndex.user_tag_5LocalConnectivityIndex.visible
mapped_valueDatatypeMeasureIndexDatatypeMeasureIndex.create_dateDatatypeMeasureIndex.disk_sizeDatatypeMeasureIndex.display_nameDatatypeMeasureIndex.fill_from_has_traits()DatatypeMeasureIndex.fk_datatype_groupDatatypeMeasureIndex.fk_from_operationDatatypeMeasureIndex.fk_parent_burstDatatypeMeasureIndex.fk_source_gidDatatypeMeasureIndex.gidDatatypeMeasureIndex.idDatatypeMeasureIndex.invalidDatatypeMeasureIndex.is_nanDatatypeMeasureIndex.metricsDatatypeMeasureIndex.moduleDatatypeMeasureIndex.parent_operationDatatypeMeasureIndex.sourceDatatypeMeasureIndex.stateDatatypeMeasureIndex.subjectDatatypeMeasureIndex.titleDatatypeMeasureIndex.typeDatatypeMeasureIndex.type_DatatypeMeasureIndex.user_tag_1DatatypeMeasureIndex.user_tag_2DatatypeMeasureIndex.user_tag_3DatatypeMeasureIndex.user_tag_4DatatypeMeasureIndex.user_tag_5DatatypeMeasureIndex.visible
ValueWrapperIndexValueWrapperIndex.create_dateValueWrapperIndex.data_nameValueWrapperIndex.data_typeValueWrapperIndex.data_valueValueWrapperIndex.disk_sizeValueWrapperIndex.display_nameValueWrapperIndex.fill_from_has_traits()ValueWrapperIndex.fk_datatype_groupValueWrapperIndex.fk_from_operationValueWrapperIndex.fk_parent_burstValueWrapperIndex.gidValueWrapperIndex.idValueWrapperIndex.invalidValueWrapperIndex.is_nanValueWrapperIndex.moduleValueWrapperIndex.parent_operationValueWrapperIndex.stateValueWrapperIndex.subjectValueWrapperIndex.titleValueWrapperIndex.typeValueWrapperIndex.type_ValueWrapperIndex.user_tag_1ValueWrapperIndex.user_tag_2ValueWrapperIndex.user_tag_3ValueWrapperIndex.user_tag_4ValueWrapperIndex.user_tag_5ValueWrapperIndex.visible
mode_decompositionsIndependentComponentsIndexIndependentComponentsIndex.array_has_complexIndependentComponentsIndex.create_dateIndependentComponentsIndex.disk_sizeIndependentComponentsIndex.fill_from_has_traits()IndependentComponentsIndex.fk_datatype_groupIndependentComponentsIndex.fk_from_operationIndependentComponentsIndex.fk_parent_burstIndependentComponentsIndex.fk_source_gidIndependentComponentsIndex.get_extra_info()IndependentComponentsIndex.gidIndependentComponentsIndex.idIndependentComponentsIndex.invalidIndependentComponentsIndex.is_nanIndependentComponentsIndex.moduleIndependentComponentsIndex.ndimIndependentComponentsIndex.parent_operationIndependentComponentsIndex.parsed_shapeIndependentComponentsIndex.shapeIndependentComponentsIndex.sourceIndependentComponentsIndex.stateIndependentComponentsIndex.subjectIndependentComponentsIndex.titleIndependentComponentsIndex.typeIndependentComponentsIndex.type_IndependentComponentsIndex.user_tag_1IndependentComponentsIndex.user_tag_2IndependentComponentsIndex.user_tag_3IndependentComponentsIndex.user_tag_4IndependentComponentsIndex.user_tag_5IndependentComponentsIndex.visible
PrincipalComponentsIndexPrincipalComponentsIndex.create_datePrincipalComponentsIndex.disk_sizePrincipalComponentsIndex.fill_from_has_traits()PrincipalComponentsIndex.fk_datatype_groupPrincipalComponentsIndex.fk_from_operationPrincipalComponentsIndex.fk_parent_burstPrincipalComponentsIndex.fk_source_gidPrincipalComponentsIndex.get_extra_info()PrincipalComponentsIndex.gidPrincipalComponentsIndex.idPrincipalComponentsIndex.invalidPrincipalComponentsIndex.is_nanPrincipalComponentsIndex.modulePrincipalComponentsIndex.parent_operationPrincipalComponentsIndex.sourcePrincipalComponentsIndex.statePrincipalComponentsIndex.subjectPrincipalComponentsIndex.titlePrincipalComponentsIndex.typePrincipalComponentsIndex.type_PrincipalComponentsIndex.user_tag_1PrincipalComponentsIndex.user_tag_2PrincipalComponentsIndex.user_tag_3PrincipalComponentsIndex.user_tag_4PrincipalComponentsIndex.user_tag_5PrincipalComponentsIndex.visible
patternsSpatioTemporalPatternIndexSpatioTemporalPatternIndex.create_dateSpatioTemporalPatternIndex.disk_sizeSpatioTemporalPatternIndex.fill_from_has_traits()SpatioTemporalPatternIndex.fk_datatype_groupSpatioTemporalPatternIndex.fk_from_operationSpatioTemporalPatternIndex.fk_parent_burstSpatioTemporalPatternIndex.gidSpatioTemporalPatternIndex.idSpatioTemporalPatternIndex.invalidSpatioTemporalPatternIndex.is_nanSpatioTemporalPatternIndex.moduleSpatioTemporalPatternIndex.parent_operationSpatioTemporalPatternIndex.spatial_equationSpatioTemporalPatternIndex.spatial_parametersSpatioTemporalPatternIndex.stateSpatioTemporalPatternIndex.subjectSpatioTemporalPatternIndex.temporal_equationSpatioTemporalPatternIndex.temporal_parametersSpatioTemporalPatternIndex.titleSpatioTemporalPatternIndex.typeSpatioTemporalPatternIndex.type_SpatioTemporalPatternIndex.user_tag_1SpatioTemporalPatternIndex.user_tag_2SpatioTemporalPatternIndex.user_tag_3SpatioTemporalPatternIndex.user_tag_4SpatioTemporalPatternIndex.user_tag_5SpatioTemporalPatternIndex.visible
StimuliRegionIndexStimuliRegionIndex.connectivityStimuliRegionIndex.create_dateStimuliRegionIndex.disk_sizeStimuliRegionIndex.fill_from_has_traits()StimuliRegionIndex.fk_connectivity_gidStimuliRegionIndex.fk_datatype_groupStimuliRegionIndex.fk_from_operationStimuliRegionIndex.fk_parent_burstStimuliRegionIndex.gidStimuliRegionIndex.idStimuliRegionIndex.invalidStimuliRegionIndex.is_nanStimuliRegionIndex.moduleStimuliRegionIndex.parent_operationStimuliRegionIndex.spatial_equationStimuliRegionIndex.spatial_parametersStimuliRegionIndex.stateStimuliRegionIndex.subjectStimuliRegionIndex.temporal_equationStimuliRegionIndex.temporal_parametersStimuliRegionIndex.titleStimuliRegionIndex.typeStimuliRegionIndex.type_StimuliRegionIndex.user_tag_1StimuliRegionIndex.user_tag_2StimuliRegionIndex.user_tag_3StimuliRegionIndex.user_tag_4StimuliRegionIndex.user_tag_5StimuliRegionIndex.visible
StimuliSurfaceIndexStimuliSurfaceIndex.create_dateStimuliSurfaceIndex.disk_sizeStimuliSurfaceIndex.fill_from_has_traits()StimuliSurfaceIndex.fk_datatype_groupStimuliSurfaceIndex.fk_from_operationStimuliSurfaceIndex.fk_parent_burstStimuliSurfaceIndex.fk_surface_gidStimuliSurfaceIndex.gidStimuliSurfaceIndex.idStimuliSurfaceIndex.invalidStimuliSurfaceIndex.is_nanStimuliSurfaceIndex.moduleStimuliSurfaceIndex.parent_operationStimuliSurfaceIndex.spatial_equationStimuliSurfaceIndex.spatial_parametersStimuliSurfaceIndex.stateStimuliSurfaceIndex.subjectStimuliSurfaceIndex.surfaceStimuliSurfaceIndex.temporal_equationStimuliSurfaceIndex.temporal_parametersStimuliSurfaceIndex.titleStimuliSurfaceIndex.typeStimuliSurfaceIndex.type_StimuliSurfaceIndex.user_tag_1StimuliSurfaceIndex.user_tag_2StimuliSurfaceIndex.user_tag_3StimuliSurfaceIndex.user_tag_4StimuliSurfaceIndex.user_tag_5StimuliSurfaceIndex.visible
projectionsProjectionMatrixIndexProjectionMatrixIndex.brain_skullProjectionMatrixIndex.create_dateProjectionMatrixIndex.disk_sizeProjectionMatrixIndex.display_nameProjectionMatrixIndex.fill_from_has_traits()ProjectionMatrixIndex.fk_brain_skull_gidProjectionMatrixIndex.fk_datatype_groupProjectionMatrixIndex.fk_from_operationProjectionMatrixIndex.fk_parent_burstProjectionMatrixIndex.fk_sensors_gidProjectionMatrixIndex.fk_skin_air_gidProjectionMatrixIndex.fk_skull_skin_gidProjectionMatrixIndex.fk_source_gidProjectionMatrixIndex.get_subtype_attr()ProjectionMatrixIndex.gidProjectionMatrixIndex.idProjectionMatrixIndex.invalidProjectionMatrixIndex.is_nanProjectionMatrixIndex.moduleProjectionMatrixIndex.parent_operationProjectionMatrixIndex.projection_typeProjectionMatrixIndex.sensorsProjectionMatrixIndex.skin_airProjectionMatrixIndex.skull_skinProjectionMatrixIndex.sourceProjectionMatrixIndex.stateProjectionMatrixIndex.subjectProjectionMatrixIndex.titleProjectionMatrixIndex.typeProjectionMatrixIndex.type_ProjectionMatrixIndex.user_tag_1ProjectionMatrixIndex.user_tag_2ProjectionMatrixIndex.user_tag_3ProjectionMatrixIndex.user_tag_4ProjectionMatrixIndex.user_tag_5ProjectionMatrixIndex.visible
region_mappingRegionMappingIndexRegionMappingIndex.after_store()RegionMappingIndex.array_data_maxRegionMappingIndex.array_data_meanRegionMappingIndex.array_data_minRegionMappingIndex.connectivityRegionMappingIndex.create_dateRegionMappingIndex.disk_sizeRegionMappingIndex.fill_from_has_traits()RegionMappingIndex.fk_connectivity_gidRegionMappingIndex.fk_datatype_groupRegionMappingIndex.fk_from_operationRegionMappingIndex.fk_parent_burstRegionMappingIndex.fk_surface_gidRegionMappingIndex.gidRegionMappingIndex.idRegionMappingIndex.invalidRegionMappingIndex.is_nanRegionMappingIndex.moduleRegionMappingIndex.parent_operationRegionMappingIndex.stateRegionMappingIndex.subjectRegionMappingIndex.surfaceRegionMappingIndex.titleRegionMappingIndex.typeRegionMappingIndex.type_RegionMappingIndex.user_tag_1RegionMappingIndex.user_tag_2RegionMappingIndex.user_tag_3RegionMappingIndex.user_tag_4RegionMappingIndex.user_tag_5RegionMappingIndex.visible
RegionVolumeMappingIndexRegionVolumeMappingIndex.after_store()RegionVolumeMappingIndex.array_data_maxRegionVolumeMappingIndex.array_data_meanRegionVolumeMappingIndex.array_data_minRegionVolumeMappingIndex.array_has_complexRegionVolumeMappingIndex.array_is_finiteRegionVolumeMappingIndex.connectivityRegionVolumeMappingIndex.create_dateRegionVolumeMappingIndex.disk_sizeRegionVolumeMappingIndex.fill_from_has_traits()RegionVolumeMappingIndex.fk_connectivity_gidRegionVolumeMappingIndex.fk_datatype_groupRegionVolumeMappingIndex.fk_from_operationRegionVolumeMappingIndex.fk_parent_burstRegionVolumeMappingIndex.fk_volume_gidRegionVolumeMappingIndex.gidRegionVolumeMappingIndex.has_valid_time_seriesRegionVolumeMappingIndex.has_volume_mappingRegionVolumeMappingIndex.idRegionVolumeMappingIndex.invalidRegionVolumeMappingIndex.is_nanRegionVolumeMappingIndex.moduleRegionVolumeMappingIndex.ndimRegionVolumeMappingIndex.parent_operationRegionVolumeMappingIndex.shapeRegionVolumeMappingIndex.stateRegionVolumeMappingIndex.subjectRegionVolumeMappingIndex.subtypeRegionVolumeMappingIndex.titleRegionVolumeMappingIndex.typeRegionVolumeMappingIndex.type_RegionVolumeMappingIndex.user_tag_1RegionVolumeMappingIndex.user_tag_2RegionVolumeMappingIndex.user_tag_3RegionVolumeMappingIndex.user_tag_4RegionVolumeMappingIndex.user_tag_5RegionVolumeMappingIndex.visibleRegionVolumeMappingIndex.volume
sensorsSensorsIndexSensorsIndex.create_dateSensorsIndex.disk_sizeSensorsIndex.display_nameSensorsIndex.fill_from_has_traits()SensorsIndex.fk_datatype_groupSensorsIndex.fk_from_operationSensorsIndex.fk_parent_burstSensorsIndex.get_subtype_attr()SensorsIndex.gidSensorsIndex.idSensorsIndex.invalidSensorsIndex.is_nanSensorsIndex.moduleSensorsIndex.number_of_sensorsSensorsIndex.parent_operationSensorsIndex.sensors_typeSensorsIndex.stateSensorsIndex.subjectSensorsIndex.titleSensorsIndex.typeSensorsIndex.type_SensorsIndex.user_tag_1SensorsIndex.user_tag_2SensorsIndex.user_tag_3SensorsIndex.user_tag_4SensorsIndex.user_tag_5SensorsIndex.visible
simulation_historySimulationHistoryIndexSimulationHistoryIndex.create_dateSimulationHistoryIndex.disk_sizeSimulationHistoryIndex.fill_from_has_traits()SimulationHistoryIndex.fk_datatype_groupSimulationHistoryIndex.fk_from_operationSimulationHistoryIndex.fk_parent_burstSimulationHistoryIndex.gidSimulationHistoryIndex.idSimulationHistoryIndex.invalidSimulationHistoryIndex.is_nanSimulationHistoryIndex.moduleSimulationHistoryIndex.parent_operationSimulationHistoryIndex.stateSimulationHistoryIndex.subjectSimulationHistoryIndex.titleSimulationHistoryIndex.typeSimulationHistoryIndex.type_SimulationHistoryIndex.user_tag_1SimulationHistoryIndex.user_tag_2SimulationHistoryIndex.user_tag_3SimulationHistoryIndex.user_tag_4SimulationHistoryIndex.user_tag_5SimulationHistoryIndex.visible
spectralCoherenceSpectrumIndexCoherenceSpectrumIndex.array_data_maxCoherenceSpectrumIndex.array_data_meanCoherenceSpectrumIndex.array_data_minCoherenceSpectrumIndex.array_has_complexCoherenceSpectrumIndex.array_is_finiteCoherenceSpectrumIndex.create_dateCoherenceSpectrumIndex.disk_sizeCoherenceSpectrumIndex.fill_from_has_traits()CoherenceSpectrumIndex.fk_datatype_groupCoherenceSpectrumIndex.fk_from_operationCoherenceSpectrumIndex.fk_parent_burstCoherenceSpectrumIndex.fk_source_gidCoherenceSpectrumIndex.frequencies_maxCoherenceSpectrumIndex.frequencies_minCoherenceSpectrumIndex.get_extra_info()CoherenceSpectrumIndex.gidCoherenceSpectrumIndex.has_valid_time_seriesCoherenceSpectrumIndex.has_volume_mappingCoherenceSpectrumIndex.idCoherenceSpectrumIndex.invalidCoherenceSpectrumIndex.is_nanCoherenceSpectrumIndex.moduleCoherenceSpectrumIndex.ndimCoherenceSpectrumIndex.nfftCoherenceSpectrumIndex.parent_operationCoherenceSpectrumIndex.shapeCoherenceSpectrumIndex.sourceCoherenceSpectrumIndex.stateCoherenceSpectrumIndex.subjectCoherenceSpectrumIndex.subtypeCoherenceSpectrumIndex.titleCoherenceSpectrumIndex.typeCoherenceSpectrumIndex.type_CoherenceSpectrumIndex.user_tag_1CoherenceSpectrumIndex.user_tag_2CoherenceSpectrumIndex.user_tag_3CoherenceSpectrumIndex.user_tag_4CoherenceSpectrumIndex.user_tag_5CoherenceSpectrumIndex.visible
ComplexCoherenceSpectrumIndexComplexCoherenceSpectrumIndex.array_data_maxComplexCoherenceSpectrumIndex.array_data_meanComplexCoherenceSpectrumIndex.array_data_minComplexCoherenceSpectrumIndex.array_has_complexComplexCoherenceSpectrumIndex.array_is_finiteComplexCoherenceSpectrumIndex.create_dateComplexCoherenceSpectrumIndex.disk_sizeComplexCoherenceSpectrumIndex.epoch_lengthComplexCoherenceSpectrumIndex.fill_from_has_traits()ComplexCoherenceSpectrumIndex.fk_datatype_groupComplexCoherenceSpectrumIndex.fk_from_operationComplexCoherenceSpectrumIndex.fk_parent_burstComplexCoherenceSpectrumIndex.fk_source_gidComplexCoherenceSpectrumIndex.frequency_stepComplexCoherenceSpectrumIndex.get_extra_info()ComplexCoherenceSpectrumIndex.gidComplexCoherenceSpectrumIndex.has_valid_time_seriesComplexCoherenceSpectrumIndex.has_volume_mappingComplexCoherenceSpectrumIndex.idComplexCoherenceSpectrumIndex.invalidComplexCoherenceSpectrumIndex.is_nanComplexCoherenceSpectrumIndex.max_frequencyComplexCoherenceSpectrumIndex.moduleComplexCoherenceSpectrumIndex.ndimComplexCoherenceSpectrumIndex.parent_operationComplexCoherenceSpectrumIndex.segment_lengthComplexCoherenceSpectrumIndex.shapeComplexCoherenceSpectrumIndex.sourceComplexCoherenceSpectrumIndex.stateComplexCoherenceSpectrumIndex.subjectComplexCoherenceSpectrumIndex.subtypeComplexCoherenceSpectrumIndex.titleComplexCoherenceSpectrumIndex.typeComplexCoherenceSpectrumIndex.type_ComplexCoherenceSpectrumIndex.user_tag_1ComplexCoherenceSpectrumIndex.user_tag_2ComplexCoherenceSpectrumIndex.user_tag_3ComplexCoherenceSpectrumIndex.user_tag_4ComplexCoherenceSpectrumIndex.user_tag_5ComplexCoherenceSpectrumIndex.visibleComplexCoherenceSpectrumIndex.windowing_function
FourierSpectrumIndexFourierSpectrumIndex.array_data_maxFourierSpectrumIndex.array_data_meanFourierSpectrumIndex.array_data_minFourierSpectrumIndex.array_has_complexFourierSpectrumIndex.array_is_finiteFourierSpectrumIndex.create_dateFourierSpectrumIndex.disk_sizeFourierSpectrumIndex.fill_from_has_traits()FourierSpectrumIndex.fk_datatype_groupFourierSpectrumIndex.fk_from_operationFourierSpectrumIndex.fk_parent_burstFourierSpectrumIndex.fk_source_gidFourierSpectrumIndex.frequency_stepFourierSpectrumIndex.get_extra_info()FourierSpectrumIndex.gidFourierSpectrumIndex.has_valid_time_seriesFourierSpectrumIndex.has_volume_mappingFourierSpectrumIndex.idFourierSpectrumIndex.invalidFourierSpectrumIndex.is_nanFourierSpectrumIndex.max_frequencyFourierSpectrumIndex.moduleFourierSpectrumIndex.ndimFourierSpectrumIndex.parent_operationFourierSpectrumIndex.segment_lengthFourierSpectrumIndex.shapeFourierSpectrumIndex.sourceFourierSpectrumIndex.stateFourierSpectrumIndex.subjectFourierSpectrumIndex.subtypeFourierSpectrumIndex.titleFourierSpectrumIndex.typeFourierSpectrumIndex.type_FourierSpectrumIndex.user_tag_1FourierSpectrumIndex.user_tag_2FourierSpectrumIndex.user_tag_3FourierSpectrumIndex.user_tag_4FourierSpectrumIndex.user_tag_5FourierSpectrumIndex.visibleFourierSpectrumIndex.windowing_function
WaveletCoefficientsIndexWaveletCoefficientsIndex.array_data_maxWaveletCoefficientsIndex.array_data_meanWaveletCoefficientsIndex.array_data_minWaveletCoefficientsIndex.array_has_complexWaveletCoefficientsIndex.array_is_finiteWaveletCoefficientsIndex.create_dateWaveletCoefficientsIndex.disk_sizeWaveletCoefficientsIndex.fill_from_has_traits()WaveletCoefficientsIndex.fk_datatype_groupWaveletCoefficientsIndex.fk_from_operationWaveletCoefficientsIndex.fk_parent_burstWaveletCoefficientsIndex.fk_source_gidWaveletCoefficientsIndex.frequencies_maxWaveletCoefficientsIndex.frequencies_minWaveletCoefficientsIndex.get_extra_info()WaveletCoefficientsIndex.gidWaveletCoefficientsIndex.has_valid_time_seriesWaveletCoefficientsIndex.has_volume_mappingWaveletCoefficientsIndex.idWaveletCoefficientsIndex.invalidWaveletCoefficientsIndex.is_nanWaveletCoefficientsIndex.moduleWaveletCoefficientsIndex.motherWaveletCoefficientsIndex.ndimWaveletCoefficientsIndex.normalisationWaveletCoefficientsIndex.number_of_scalesWaveletCoefficientsIndex.parent_operationWaveletCoefficientsIndex.q_ratioWaveletCoefficientsIndex.sample_periodWaveletCoefficientsIndex.shapeWaveletCoefficientsIndex.sourceWaveletCoefficientsIndex.stateWaveletCoefficientsIndex.subjectWaveletCoefficientsIndex.subtypeWaveletCoefficientsIndex.titleWaveletCoefficientsIndex.typeWaveletCoefficientsIndex.type_WaveletCoefficientsIndex.user_tag_1WaveletCoefficientsIndex.user_tag_2WaveletCoefficientsIndex.user_tag_3WaveletCoefficientsIndex.user_tag_4WaveletCoefficientsIndex.user_tag_5WaveletCoefficientsIndex.visible
structuralStructuralMRIIndexStructuralMRIIndex.array_data_maxStructuralMRIIndex.array_data_meanStructuralMRIIndex.array_data_minStructuralMRIIndex.array_has_complexStructuralMRIIndex.array_is_finiteStructuralMRIIndex.create_dateStructuralMRIIndex.disk_sizeStructuralMRIIndex.fill_from_has_traits()StructuralMRIIndex.fk_datatype_groupStructuralMRIIndex.fk_from_operationStructuralMRIIndex.fk_parent_burstStructuralMRIIndex.fk_volume_gidStructuralMRIIndex.gidStructuralMRIIndex.has_valid_time_seriesStructuralMRIIndex.has_volume_mappingStructuralMRIIndex.idStructuralMRIIndex.invalidStructuralMRIIndex.is_nanStructuralMRIIndex.moduleStructuralMRIIndex.ndimStructuralMRIIndex.parent_operationStructuralMRIIndex.shapeStructuralMRIIndex.stateStructuralMRIIndex.subjectStructuralMRIIndex.subtypeStructuralMRIIndex.titleStructuralMRIIndex.typeStructuralMRIIndex.type_StructuralMRIIndex.user_tag_1StructuralMRIIndex.user_tag_2StructuralMRIIndex.user_tag_3StructuralMRIIndex.user_tag_4StructuralMRIIndex.user_tag_5StructuralMRIIndex.visibleStructuralMRIIndex.volumeStructuralMRIIndex.weighting
surfaceSurfaceIndexSurfaceIndex.bi_hemisphericSurfaceIndex.create_dateSurfaceIndex.disk_sizeSurfaceIndex.display_nameSurfaceIndex.edge_max_lengthSurfaceIndex.edge_mean_lengthSurfaceIndex.edge_min_lengthSurfaceIndex.fill_from_has_traits()SurfaceIndex.fk_datatype_groupSurfaceIndex.fk_from_operationSurfaceIndex.fk_parent_burstSurfaceIndex.get_subtype_attr()SurfaceIndex.gidSurfaceIndex.idSurfaceIndex.invalidSurfaceIndex.is_nanSurfaceIndex.moduleSurfaceIndex.number_of_edgesSurfaceIndex.number_of_trianglesSurfaceIndex.number_of_verticesSurfaceIndex.parent_operationSurfaceIndex.stateSurfaceIndex.subjectSurfaceIndex.surface_typeSurfaceIndex.titleSurfaceIndex.typeSurfaceIndex.type_SurfaceIndex.user_tag_1SurfaceIndex.user_tag_2SurfaceIndex.user_tag_3SurfaceIndex.user_tag_4SurfaceIndex.user_tag_5SurfaceIndex.valid_for_simulationsSurfaceIndex.visible
temporal_correlationsCrossCorrelationIndexCrossCorrelationIndex.array_data_maxCrossCorrelationIndex.array_data_meanCrossCorrelationIndex.array_data_minCrossCorrelationIndex.array_has_complexCrossCorrelationIndex.array_is_finiteCrossCorrelationIndex.create_dateCrossCorrelationIndex.disk_sizeCrossCorrelationIndex.fill_from_has_traits()CrossCorrelationIndex.fk_datatype_groupCrossCorrelationIndex.fk_from_operationCrossCorrelationIndex.fk_parent_burstCrossCorrelationIndex.fk_source_gidCrossCorrelationIndex.get_extra_info()CrossCorrelationIndex.gidCrossCorrelationIndex.has_valid_time_seriesCrossCorrelationIndex.has_volume_mappingCrossCorrelationIndex.idCrossCorrelationIndex.invalidCrossCorrelationIndex.is_nanCrossCorrelationIndex.labels_orderingCrossCorrelationIndex.moduleCrossCorrelationIndex.ndimCrossCorrelationIndex.parent_operationCrossCorrelationIndex.shapeCrossCorrelationIndex.sourceCrossCorrelationIndex.stateCrossCorrelationIndex.subjectCrossCorrelationIndex.subtypeCrossCorrelationIndex.titleCrossCorrelationIndex.typeCrossCorrelationIndex.type_CrossCorrelationIndex.user_tag_1CrossCorrelationIndex.user_tag_2CrossCorrelationIndex.user_tag_3CrossCorrelationIndex.user_tag_4CrossCorrelationIndex.user_tag_5CrossCorrelationIndex.visible
time_seriesTimeSeriesEEGIndexTimeSeriesEEGIndex.create_dateTimeSeriesEEGIndex.data_length_1dTimeSeriesEEGIndex.data_length_2dTimeSeriesEEGIndex.data_length_3dTimeSeriesEEGIndex.data_length_4dTimeSeriesEEGIndex.data_ndimTimeSeriesEEGIndex.disk_sizeTimeSeriesEEGIndex.fill_from_h5()TimeSeriesEEGIndex.fill_from_has_traits()TimeSeriesEEGIndex.fk_datatype_groupTimeSeriesEEGIndex.fk_from_operationTimeSeriesEEGIndex.fk_parent_burstTimeSeriesEEGIndex.fk_sensors_gidTimeSeriesEEGIndex.gidTimeSeriesEEGIndex.has_surface_mappingTimeSeriesEEGIndex.has_volume_mappingTimeSeriesEEGIndex.idTimeSeriesEEGIndex.invalidTimeSeriesEEGIndex.is_nanTimeSeriesEEGIndex.labels_dimensionsTimeSeriesEEGIndex.labels_orderingTimeSeriesEEGIndex.moduleTimeSeriesEEGIndex.parent_operationTimeSeriesEEGIndex.sample_periodTimeSeriesEEGIndex.sample_period_unitTimeSeriesEEGIndex.sample_rateTimeSeriesEEGIndex.sensorsTimeSeriesEEGIndex.start_timeTimeSeriesEEGIndex.stateTimeSeriesEEGIndex.subjectTimeSeriesEEGIndex.time_series_typeTimeSeriesEEGIndex.titleTimeSeriesEEGIndex.typeTimeSeriesEEGIndex.type_TimeSeriesEEGIndex.user_tag_1TimeSeriesEEGIndex.user_tag_2TimeSeriesEEGIndex.user_tag_3TimeSeriesEEGIndex.user_tag_4TimeSeriesEEGIndex.user_tag_5TimeSeriesEEGIndex.visible
TimeSeriesIndexTimeSeriesIndex.accepted_filters()TimeSeriesIndex.create_dateTimeSeriesIndex.data_length_1dTimeSeriesIndex.data_length_2dTimeSeriesIndex.data_length_3dTimeSeriesIndex.data_length_4dTimeSeriesIndex.data_ndimTimeSeriesIndex.disk_sizeTimeSeriesIndex.fill_from_h5()TimeSeriesIndex.fill_from_has_traits()TimeSeriesIndex.fill_shape()TimeSeriesIndex.fk_datatype_groupTimeSeriesIndex.fk_from_operationTimeSeriesIndex.fk_parent_burstTimeSeriesIndex.get_data_shape()TimeSeriesIndex.get_extra_info()TimeSeriesIndex.get_labels_for_dimension()TimeSeriesIndex.gidTimeSeriesIndex.has_surface_mappingTimeSeriesIndex.has_volume_mappingTimeSeriesIndex.idTimeSeriesIndex.invalidTimeSeriesIndex.is_nanTimeSeriesIndex.labels_dimensionsTimeSeriesIndex.labels_orderingTimeSeriesIndex.moduleTimeSeriesIndex.parent_operationTimeSeriesIndex.sample_periodTimeSeriesIndex.sample_period_unitTimeSeriesIndex.sample_rateTimeSeriesIndex.start_timeTimeSeriesIndex.stateTimeSeriesIndex.subjectTimeSeriesIndex.time_series_typeTimeSeriesIndex.titleTimeSeriesIndex.typeTimeSeriesIndex.type_TimeSeriesIndex.user_tag_1TimeSeriesIndex.user_tag_2TimeSeriesIndex.user_tag_3TimeSeriesIndex.user_tag_4TimeSeriesIndex.user_tag_5TimeSeriesIndex.visible
TimeSeriesMEGIndexTimeSeriesMEGIndex.create_dateTimeSeriesMEGIndex.data_length_1dTimeSeriesMEGIndex.data_length_2dTimeSeriesMEGIndex.data_length_3dTimeSeriesMEGIndex.data_length_4dTimeSeriesMEGIndex.data_ndimTimeSeriesMEGIndex.disk_sizeTimeSeriesMEGIndex.fill_from_h5()TimeSeriesMEGIndex.fill_from_has_traits()TimeSeriesMEGIndex.fk_datatype_groupTimeSeriesMEGIndex.fk_from_operationTimeSeriesMEGIndex.fk_parent_burstTimeSeriesMEGIndex.fk_sensors_gidTimeSeriesMEGIndex.gidTimeSeriesMEGIndex.has_surface_mappingTimeSeriesMEGIndex.has_volume_mappingTimeSeriesMEGIndex.idTimeSeriesMEGIndex.invalidTimeSeriesMEGIndex.is_nanTimeSeriesMEGIndex.labels_dimensionsTimeSeriesMEGIndex.labels_orderingTimeSeriesMEGIndex.moduleTimeSeriesMEGIndex.parent_operationTimeSeriesMEGIndex.sample_periodTimeSeriesMEGIndex.sample_period_unitTimeSeriesMEGIndex.sample_rateTimeSeriesMEGIndex.sensorsTimeSeriesMEGIndex.start_timeTimeSeriesMEGIndex.stateTimeSeriesMEGIndex.subjectTimeSeriesMEGIndex.time_series_typeTimeSeriesMEGIndex.titleTimeSeriesMEGIndex.typeTimeSeriesMEGIndex.type_TimeSeriesMEGIndex.user_tag_1TimeSeriesMEGIndex.user_tag_2TimeSeriesMEGIndex.user_tag_3TimeSeriesMEGIndex.user_tag_4TimeSeriesMEGIndex.user_tag_5TimeSeriesMEGIndex.visible
TimeSeriesRegionIndexTimeSeriesRegionIndex.connectivityTimeSeriesRegionIndex.create_dateTimeSeriesRegionIndex.data_length_1dTimeSeriesRegionIndex.data_length_2dTimeSeriesRegionIndex.data_length_3dTimeSeriesRegionIndex.data_length_4dTimeSeriesRegionIndex.data_ndimTimeSeriesRegionIndex.disk_sizeTimeSeriesRegionIndex.fill_from_h5()TimeSeriesRegionIndex.fill_from_has_traits()TimeSeriesRegionIndex.fk_connectivity_gidTimeSeriesRegionIndex.fk_datatype_groupTimeSeriesRegionIndex.fk_from_operationTimeSeriesRegionIndex.fk_parent_burstTimeSeriesRegionIndex.fk_region_mapping_gidTimeSeriesRegionIndex.fk_region_mapping_volume_gidTimeSeriesRegionIndex.gidTimeSeriesRegionIndex.has_surface_mappingTimeSeriesRegionIndex.has_volume_mappingTimeSeriesRegionIndex.idTimeSeriesRegionIndex.invalidTimeSeriesRegionIndex.is_nanTimeSeriesRegionIndex.labels_dimensionsTimeSeriesRegionIndex.labels_orderingTimeSeriesRegionIndex.moduleTimeSeriesRegionIndex.parent_operationTimeSeriesRegionIndex.region_mappingTimeSeriesRegionIndex.region_mapping_volumeTimeSeriesRegionIndex.sample_periodTimeSeriesRegionIndex.sample_period_unitTimeSeriesRegionIndex.sample_rateTimeSeriesRegionIndex.start_timeTimeSeriesRegionIndex.stateTimeSeriesRegionIndex.subjectTimeSeriesRegionIndex.time_series_typeTimeSeriesRegionIndex.titleTimeSeriesRegionIndex.typeTimeSeriesRegionIndex.type_TimeSeriesRegionIndex.user_tag_1TimeSeriesRegionIndex.user_tag_2TimeSeriesRegionIndex.user_tag_3TimeSeriesRegionIndex.user_tag_4TimeSeriesRegionIndex.user_tag_5TimeSeriesRegionIndex.visible
TimeSeriesSEEGIndexTimeSeriesSEEGIndex.create_dateTimeSeriesSEEGIndex.data_length_1dTimeSeriesSEEGIndex.data_length_2dTimeSeriesSEEGIndex.data_length_3dTimeSeriesSEEGIndex.data_length_4dTimeSeriesSEEGIndex.data_ndimTimeSeriesSEEGIndex.disk_sizeTimeSeriesSEEGIndex.fill_from_h5()TimeSeriesSEEGIndex.fill_from_has_traits()TimeSeriesSEEGIndex.fk_datatype_groupTimeSeriesSEEGIndex.fk_from_operationTimeSeriesSEEGIndex.fk_parent_burstTimeSeriesSEEGIndex.fk_sensors_gidTimeSeriesSEEGIndex.gidTimeSeriesSEEGIndex.has_surface_mappingTimeSeriesSEEGIndex.has_volume_mappingTimeSeriesSEEGIndex.idTimeSeriesSEEGIndex.invalidTimeSeriesSEEGIndex.is_nanTimeSeriesSEEGIndex.labels_dimensionsTimeSeriesSEEGIndex.labels_orderingTimeSeriesSEEGIndex.moduleTimeSeriesSEEGIndex.parent_operationTimeSeriesSEEGIndex.sample_periodTimeSeriesSEEGIndex.sample_period_unitTimeSeriesSEEGIndex.sample_rateTimeSeriesSEEGIndex.sensorsTimeSeriesSEEGIndex.start_timeTimeSeriesSEEGIndex.stateTimeSeriesSEEGIndex.subjectTimeSeriesSEEGIndex.time_series_typeTimeSeriesSEEGIndex.titleTimeSeriesSEEGIndex.typeTimeSeriesSEEGIndex.type_TimeSeriesSEEGIndex.user_tag_1TimeSeriesSEEGIndex.user_tag_2TimeSeriesSEEGIndex.user_tag_3TimeSeriesSEEGIndex.user_tag_4TimeSeriesSEEGIndex.user_tag_5TimeSeriesSEEGIndex.visible
TimeSeriesSurfaceIndexTimeSeriesSurfaceIndex.create_dateTimeSeriesSurfaceIndex.data_length_1dTimeSeriesSurfaceIndex.data_length_2dTimeSeriesSurfaceIndex.data_length_3dTimeSeriesSurfaceIndex.data_length_4dTimeSeriesSurfaceIndex.data_ndimTimeSeriesSurfaceIndex.disk_sizeTimeSeriesSurfaceIndex.fill_from_h5()TimeSeriesSurfaceIndex.fill_from_has_traits()TimeSeriesSurfaceIndex.fk_datatype_groupTimeSeriesSurfaceIndex.fk_from_operationTimeSeriesSurfaceIndex.fk_parent_burstTimeSeriesSurfaceIndex.fk_surface_gidTimeSeriesSurfaceIndex.gidTimeSeriesSurfaceIndex.has_surface_mappingTimeSeriesSurfaceIndex.has_volume_mappingTimeSeriesSurfaceIndex.idTimeSeriesSurfaceIndex.invalidTimeSeriesSurfaceIndex.is_nanTimeSeriesSurfaceIndex.labels_dimensionsTimeSeriesSurfaceIndex.labels_orderingTimeSeriesSurfaceIndex.moduleTimeSeriesSurfaceIndex.parent_operationTimeSeriesSurfaceIndex.sample_periodTimeSeriesSurfaceIndex.sample_period_unitTimeSeriesSurfaceIndex.sample_rateTimeSeriesSurfaceIndex.start_timeTimeSeriesSurfaceIndex.stateTimeSeriesSurfaceIndex.subjectTimeSeriesSurfaceIndex.surfaceTimeSeriesSurfaceIndex.time_series_typeTimeSeriesSurfaceIndex.titleTimeSeriesSurfaceIndex.typeTimeSeriesSurfaceIndex.type_TimeSeriesSurfaceIndex.user_tag_1TimeSeriesSurfaceIndex.user_tag_2TimeSeriesSurfaceIndex.user_tag_3TimeSeriesSurfaceIndex.user_tag_4TimeSeriesSurfaceIndex.user_tag_5TimeSeriesSurfaceIndex.visible
TimeSeriesVolumeIndexTimeSeriesVolumeIndex.create_dateTimeSeriesVolumeIndex.data_length_1dTimeSeriesVolumeIndex.data_length_2dTimeSeriesVolumeIndex.data_length_3dTimeSeriesVolumeIndex.data_length_4dTimeSeriesVolumeIndex.data_ndimTimeSeriesVolumeIndex.disk_sizeTimeSeriesVolumeIndex.fill_from_h5()TimeSeriesVolumeIndex.fill_from_has_traits()TimeSeriesVolumeIndex.fk_datatype_groupTimeSeriesVolumeIndex.fk_from_operationTimeSeriesVolumeIndex.fk_parent_burstTimeSeriesVolumeIndex.fk_volume_gidTimeSeriesVolumeIndex.gidTimeSeriesVolumeIndex.has_surface_mappingTimeSeriesVolumeIndex.has_volume_mappingTimeSeriesVolumeIndex.idTimeSeriesVolumeIndex.invalidTimeSeriesVolumeIndex.is_nanTimeSeriesVolumeIndex.labels_dimensionsTimeSeriesVolumeIndex.labels_orderingTimeSeriesVolumeIndex.moduleTimeSeriesVolumeIndex.parent_operationTimeSeriesVolumeIndex.sample_periodTimeSeriesVolumeIndex.sample_period_unitTimeSeriesVolumeIndex.sample_rateTimeSeriesVolumeIndex.start_timeTimeSeriesVolumeIndex.stateTimeSeriesVolumeIndex.subjectTimeSeriesVolumeIndex.time_series_typeTimeSeriesVolumeIndex.titleTimeSeriesVolumeIndex.typeTimeSeriesVolumeIndex.type_TimeSeriesVolumeIndex.user_tag_1TimeSeriesVolumeIndex.user_tag_2TimeSeriesVolumeIndex.user_tag_3TimeSeriesVolumeIndex.user_tag_4TimeSeriesVolumeIndex.user_tag_5TimeSeriesVolumeIndex.visibleTimeSeriesVolumeIndex.volume
tractsTractsIndexTractsIndex.create_dateTractsIndex.disk_sizeTractsIndex.fill_from_has_traits()TractsIndex.fk_datatype_groupTractsIndex.fk_from_operationTractsIndex.fk_parent_burstTractsIndex.fk_region_volume_map_gidTractsIndex.gidTractsIndex.idTractsIndex.invalidTractsIndex.is_nanTractsIndex.moduleTractsIndex.parent_operationTractsIndex.region_volume_mapTractsIndex.stateTractsIndex.subjectTractsIndex.titleTractsIndex.typeTractsIndex.type_TractsIndex.user_tag_1TractsIndex.user_tag_2TractsIndex.user_tag_3TractsIndex.user_tag_4TractsIndex.user_tag_5TractsIndex.visible
volumeVolumeIndexVolumeIndex.create_dateVolumeIndex.disk_sizeVolumeIndex.fill_from_has_traits()VolumeIndex.fk_datatype_groupVolumeIndex.fk_from_operationVolumeIndex.fk_parent_burstVolumeIndex.gidVolumeIndex.idVolumeIndex.invalidVolumeIndex.is_nanVolumeIndex.moduleVolumeIndex.originVolumeIndex.parent_operationVolumeIndex.parsed_originVolumeIndex.parsed_voxel_sizeVolumeIndex.stateVolumeIndex.subjectVolumeIndex.titleVolumeIndex.typeVolumeIndex.type_VolumeIndex.user_tag_1VolumeIndex.user_tag_2VolumeIndex.user_tag_3VolumeIndex.user_tag_4VolumeIndex.user_tag_5VolumeIndex.visibleVolumeIndex.voxel_sizeVolumeIndex.voxel_unit
h5Packageannotation_h5connectivity_h5fcd_h5graph_h5local_connectivity_h5mapped_value_h5mode_decompositions_h5patterns_h5projections_h5region_mapping_h5sensors_h5spectral_h5structural_h5surface_h5SurfaceH5SurfaceH5.center()SurfaceH5.get_lines_slice()SurfaceH5.get_number_of_split_slices()SurfaceH5.get_pick_triangles_slice()SurfaceH5.get_pick_vertex_normals_slice()SurfaceH5.get_pick_vertices_slice()SurfaceH5.get_slice_vertex_boundaries()SurfaceH5.get_slices_to_hemisphere_mask()SurfaceH5.get_triangles_slice()SurfaceH5.get_vertex_normals_slice()SurfaceH5.get_vertices_slice()SurfaceH5.prepare_slices()SurfaceH5.read_subtype_attr()SurfaceH5.store()
temporal_correlations_h5time_series_h5TimeSeriesEEGH5TimeSeriesH5TimeSeriesH5.get_default_selection()TimeSeriesH5.get_grouped_space_labels()TimeSeriesH5.get_measure_points_selection_gid()TimeSeriesH5.get_min_max_values()TimeSeriesH5.get_space_labels()TimeSeriesH5.read_channels_page()TimeSeriesH5.read_data_page()TimeSeriesH5.read_data_shape()TimeSeriesH5.read_data_slice()TimeSeriesH5.read_time_page()TimeSeriesH5.store_references()TimeSeriesH5.write_data_slice()TimeSeriesH5.write_data_slice_on_grow_dimension()TimeSeriesH5.write_time_slice()
TimeSeriesMEGH5TimeSeriesRegionH5TimeSeriesSEEGH5TimeSeriesSensorsH5TimeSeriesSurfaceH5TimeSeriesVolumeH5
tracts_h5volumes_h5
- Subpackages
exportersPackageformsPackagecoupling_formsequation_formsAbsoluteEquationFormAlphaEquationFormBoldMonitorEquationsEnumCosineEquationFormDoubleExponentialEquationFormDoubleGaussianEquationFormEquationFormFirstOrderVolterraEquationFormGammaEquationFormGaussianEquationFormGeneralizedSigmoidEquationFormIdentityEquationFormLinearEquationFormLogarithmEquationFormMixtureOfGammasEquationFormPulseTrainEquationFormRescaleIntervalEquationFormSigmoidEquationFormSinusoidEquationFormSpatialEquationsEnumSurfaceModelEquationsEnumTemporalEquationsEnumTransferVectorEquationsEnumget_equation_to_form_dict()get_form_for_equation()get_ui_name_to_monitor_equation_dict()
equation_plot_formsform_with_rangesFormWithRangesFormWithRanges.CORTEX_FRAGMENT_KEYFormWithRanges.COUPLING_FRAGMENT_KEYFormWithRanges.MODEL_FRAGMENT_KEYFormWithRanges.NOISE_FRAGMENT_KEYFormWithRanges.ensure_correct_prefix_for_param_name()FormWithRanges.get_params_configurable_in_phase_plane()FormWithRanges.get_range_param_prefixes_dict()FormWithRanges.get_range_parameters()
integrator_formsmodel_formsCoombesByrne2DModelFormCoombesByrneModelFormDumontGutkinModelFormEpileptor2DModelFormEpileptorCodim3ModelFormEpileptorCodim3SlowModModelFormEpileptorModelFormEpileptorRestingStateModelFormGastSchmidtKnoscheSDModelFormGastSchmidtKnoscheSFModelFormGeneric2dOscillatorModelFormHopfieldModelFormJansenRitModelFormKuramotoModelFormLarterBreakspearModelFormLinearModelFormModelFormModelsEnumModelsEnum.COOMBES_BYRNEModelsEnum.COOMBES_BYRNE_2DModelsEnum.DUMONT_GUTKINModelsEnum.EPILEPTORModelsEnum.EPILEPTOR_2DModelsEnum.EPILEPTOR_CODIM_3ModelsEnum.EPILEPTOR_CODIM_3_SLOWModelsEnum.EPILEPTOR_RSModelsEnum.GAST_SCHMIDT_KNOSCHE_SDModelsEnum.GAST_SCHMIDT_KNOSCHE_SFModelsEnum.GENERIC_2D_OSCILLATORModelsEnum.HOPFIELDModelsEnum.JANSEN_RITModelsEnum.KURAMOTOModelsEnum.LARTER_BREAKSPEARModelsEnum.LINEARModelsEnum.MONTBRIO_PAZO_ROXINModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMOModelsEnum.REDUCED_SET_HINDMARSH_ROSEModelsEnum.REDUCED_WONG_WANGModelsEnum.REDUCED_WONG_WANG_EXC_INHModelsEnum.SUP_HOPFModelsEnum.WILSON_COWANModelsEnum.ZERLAUT_FIRST_ORDERModelsEnum.ZERLAUT_SECOND_ORDERModelsEnum.ZETTERBERG_JANSEN
MontbrioPazoRoxinModelFormReducedSetFitzHughNagumoModelFormReducedSetHindmarshRoseModelFormReducedWongWangExcInhModelFormReducedWongWangModelFormStateVariableRangesFormSupHopfModelFormWilsonCowanModelFormZerlautAdaptationFirstOrderModelFormZerlautAdaptationSecondOrderModelFormZetterbergJansenModelFormget_form_for_model()get_model_to_form_dict()
monitor_formsnoise_formssimulator_fragmentssurface_model_parameters_formSurfaceModelEquationsEnumSurfaceModelParametersFormSurfaceModelParametersForm.NAME_EQATION_PARAMS_DIVSurfaceModelParametersForm.default_equationSurfaceModelParametersForm.equation_field_labelSurfaceModelParametersForm.fill_from_trait()SurfaceModelParametersForm.get_filters()SurfaceModelParametersForm.get_input_name()SurfaceModelParametersForm.get_required_datatype()
transfer_vector_form
simulatorPackagehpc_simulator_adapterrange_parameterssimulator_adapterSimulatorAdapterSimulatorAdapter.algorithmSimulatorAdapter.branch_simulation_state_gidSimulatorAdapter.configure()SimulatorAdapter.get_adapter_fragments()SimulatorAdapter.get_execution_time_approximation()SimulatorAdapter.get_form_class()SimulatorAdapter.get_output()SimulatorAdapter.get_required_disk_size()SimulatorAdapter.get_required_memory_size()SimulatorAdapter.launch()
SimulatorAdapterForm
uploadersPackagebids_importerBIDSImporterBIDSImporter.COORDS_ROWS_KEYBIDSImporter.COORDS_TOKENBIDSImporter.DISTANCES_FILEBIDSImporter.JSON_EXTENSIONBIDSImporter.NET_TOKENBIDSImporter.NORMALS_FILEBIDSImporter.SPATIAL_TOKENBIDSImporter.SUBJECT_PREFIXBIDSImporter.TRIANGLES_FILEBIDSImporter.TSV_EXTENSIONBIDSImporter.TS_TOKENBIDSImporter.VERTICES_FILEBIDSImporter.WEIGHTS_FILEBIDSImporter.WEIGHTS_JSON_FILEBIDSImporter.get_form_class()BIDSImporter.get_output()BIDSImporter.launch()
BIDSImporterFormBIDSImporterModel
brco_importerconnectivity_measure_importercsv_connectivity_importergifti_surface_importergifti_timeseries_importermat_timeseries_eeg_importermat_timeseries_importerRegionMatTimeSeriesImporterFormRegionMatTimeSeriesImporterModelRegionMatTimeSeriesImporterModel.data_fileRegionMatTimeSeriesImporterModel.dataset_nameRegionMatTimeSeriesImporterModel.datatypeRegionMatTimeSeriesImporterModel.sampling_rateRegionMatTimeSeriesImporterModel.sliceRegionMatTimeSeriesImporterModel.start_timeRegionMatTimeSeriesImporterModel.structure_pathRegionMatTimeSeriesImporterModel.transpose
RegionTimeSeriesImporter
networkx_importernifti_importerobj_importerprojection_matrix_importerregion_mapping_importersensors_importertract_importertumor_dataset_importerTumorDatasetImporterTumorDatasetImporter.CONN_ZIP_FILETumorDatasetImporter.FC_DATASET_NAMETumorDatasetImporter.FC_MAT_FILETumorDatasetImporter.MAXIMUM_DOWNLOAD_RETRIESTumorDatasetImporter.SLEEP_TIMETumorDatasetImporter.TIME_SERIES_CSV_FILETumorDatasetImporter.get_form_class()TumorDatasetImporter.get_output()TumorDatasetImporter.get_required_disk_size()TumorDatasetImporter.get_required_memory_size()TumorDatasetImporter.launch()
TumorDatasetImporterFormTumorDatasetImporterModel
tvb_importerzip_connectivity_importerZIPConnectivityImporterZIPConnectivityImporter.AREA_TOKENZIPConnectivityImporter.CENTRES_TOKENZIPConnectivityImporter.CENTRES_TOKEN2ZIPConnectivityImporter.CORTICAL_INFOZIPConnectivityImporter.HEMISPHERE_INFOZIPConnectivityImporter.ORIENTATION_TOKENZIPConnectivityImporter.TRACT_TOKENZIPConnectivityImporter.WEIGHT_TOKENZIPConnectivityImporter.get_form_class()ZIPConnectivityImporter.get_output()ZIPConnectivityImporter.launch()
ZIPConnectivityImporterFormZIPConnectivityImporterModel
zip_surface_importer- Subpackages
brcoPackageparserXMLParserXMLParser.ATTR_ONTOLOGY_DEFINITIONXMLParser.ATTR_ONTOLOGY_LABELXMLParser.ATTR_ONTOLOGY_RELATIONXMLParser.ATTR_ONTOLOGY_SYNXMLParser.ATTR_ONTOLOGY_URIXMLParser.ATTR_TVB_IDXMLParser.ATTR_TVB_LABELXMLParser.LOGGERXMLParser.PREFIX_LEFTXMLParser.PREFIX_RIGHTXMLParser.PREFIX_TVB_IDXMLParser.read_annotation_terms()
giftiPackagematPackagenetworkx_connectivityPackageparserNetworkxParserNetworkxParser.HEMISPHERE_RIGHTNetworkxParser.KEY_EDGE_TRACTNetworkxParser.KEY_EDGE_WEIGHTNetworkxParser.KEY_NODE_COORDINATESNetworkxParser.KEY_NODE_HEMISPHERENetworkxParser.KEY_NODE_LABELNetworkxParser.KEY_NODE_REGIONNetworkxParser.OPERATORSNetworkxParser.REGION_CORTICALNetworkxParser.parse()
niftiPackageobjPackagezip_surfacePackage
visualizersPackageannotations_viewerbraincomplex_imaginary_coherenceconnectivityConnectivity2DViewerConnectivity2DViewer.DEFAULT_COLORConnectivity2DViewer.MAX_RAYConnectivity2DViewer.MAX_WEIGHT_VALUEConnectivity2DViewer.MIN_RAYConnectivity2DViewer.MIN_WEIGHT_VALUEConnectivity2DViewer.OTHER_COLORConnectivity2DViewer.compute_parameters()Connectivity2DViewer.compute_preview_parameters()Connectivity2DViewer.point2json()
Connectivity3DViewerConnectivityViewerConnectivityViewerFormConnectivityViewerModel
connectivity_edge_bundlecross_coherencecross_correlationeeg_monitorfourier_spectrumhistogramicalocal_connectivity_viewmatrix_viewerpcapearson_cross_correlationpearson_edge_bundlephase_plane_interactivepsepse_discretepse_isoclineregion_volume_mappingBaseVolumeVisualizerFormBaseVolumeVisualizerModelConnectivityMeasureVolumeVisualizerConnectivityMeasureVolumeVisualizerFormConnectivityMeasureVolumeVisualizerModelMappedArrayVolumeVisualizerMriVolumeVisualizerMriVolumeVisualizerFormRegionVolumeMappingVisualiserRegionVolumeMappingVisualiserFormRegionVolumeMappingVisualiserModelVolumeVisualizerFormVolumeVisualizerModel
sensorssurface_viewtime_seriestime_series_volumetopographictractwavelet_spectrogram
- Subpackages
configPackagealgorithm_categoriesprofile_settings- Subpackages
initPackagedatatypes_registryinitializerintrospector_registryIntrospectionRegistryIntrospectionRegistry.ADAPTERSIntrospectionRegistry.ALLEN_CREATOR_CLASSIntrospectionRegistry.ALLEN_CREATOR_MODULEIntrospectionRegistry.CONNECTIVITY_CLASSIntrospectionRegistry.CONNECTIVITY_MODULEIntrospectionRegistry.DATATYPESIntrospectionRegistry.DISCRETE_PSE_ADAPTER_CLASSIntrospectionRegistry.DISCRETE_PSE_ADAPTER_MODULEIntrospectionRegistry.ISOCLINE_PSE_ADAPTER_CLASSIntrospectionRegistry.ISOCLINE_PSE_ADAPTER_MODULEIntrospectionRegistry.MEASURE_METRICS_CLASSIntrospectionRegistry.MEASURE_METRICS_MODULEIntrospectionRegistry.SIIBRA_CREATOR_CLASSIntrospectionRegistry.SIIBRA_CREATOR_MODULEIntrospectionRegistry.SIMULATOR_CLASSIntrospectionRegistry.SIMULATOR_MODULE
import_adapters()import_dt_index()
model_manager
loggerPackage
corePackagedecoratorsoperation_async_launcheroperation_hpc_launcherremovers_factoryutils- Subpackages
adaptersPackageabcadapterABCAdapterABCAdapter.add_operation_additional_info()ABCAdapter.array_size2kb()ABCAdapter.build_adapter()ABCAdapter.build_adapter_from_class()ABCAdapter.can_be_active()ABCAdapter.configure()ABCAdapter.determine_adapter_class()ABCAdapter.extract_operation_data()ABCAdapter.fill_index_from_h5()ABCAdapter.get_adapter_fragments()ABCAdapter.get_execution_time_approximation()ABCAdapter.get_form()ABCAdapter.get_form_class()ABCAdapter.get_group_description()ABCAdapter.get_group_name()ABCAdapter.get_output()ABCAdapter.get_required_disk_size()ABCAdapter.get_required_memory_size()ABCAdapter.get_storage_path()ABCAdapter.get_ui_description()ABCAdapter.get_ui_name()ABCAdapter.get_ui_subsection()ABCAdapter.get_view_model_class()ABCAdapter.launch()ABCAdapter.launch_modeABCAdapter.load_entity_by_gid()ABCAdapter.load_traited_by_gid()ABCAdapter.load_view_model()ABCAdapter.load_with_references()ABCAdapter.path_for()ABCAdapter.store_complete()ABCAdapter.stored_adapterABCAdapter.submit_form()ABCAdapter.view_model_to_has_traits()
ABCAdapterFormAdapterLaunchModeEnumnan_allowed()nan_not_allowed()
abcdisplayerABCDisplayerABCDisplayer.KEY_CONTENTABCDisplayer.KEY_IS_ADAPTERABCDisplayer.VISUALIZERS_ROOTABCDisplayer.build_display_result()ABCDisplayer.dump_with_precision()ABCDisplayer.get_one_dimensional_list()ABCDisplayer.get_output()ABCDisplayer.get_required_disk_size()ABCDisplayer.handle_infinite_values()ABCDisplayer.launch_modeABCDisplayer.prepare_shell_surface_params()
URLGenerator
abcremoverabcuploaderarguments_serialisationconstantsexceptionsinputs_processor
code_versionsPackageentitiesPackageexportablegeneric_attributesGenericAttributesGenericAttributes.create_dateGenericAttributes.fill_from()GenericAttributes.invalidGenericAttributes.is_nanGenericAttributes.operation_tagGenericAttributes.parent_burstGenericAttributes.stateGenericAttributes.subjectGenericAttributes.user_tag_1GenericAttributes.user_tag_2GenericAttributes.user_tag_3GenericAttributes.user_tag_4GenericAttributes.user_tag_5GenericAttributes.visible
load- Subpackages
filePackagefiles_update_managerFilesUpdateManagerFilesUpdateManager.DATA_TYPES_PAGE_SIZEFilesUpdateManager.MESSAGEFilesUpdateManager.PROJECTS_PAGE_SIZEFilesUpdateManager.STATUSFilesUpdateManager.UPDATE_SCRIPTS_SUFFIXFilesUpdateManager.get_all_h5_paths()FilesUpdateManager.get_file_data_version()FilesUpdateManager.is_file_up_to_date()FilesUpdateManager.run_all_updates()FilesUpdateManager.upgrade_file()
- Subpackages
file_update_scriptsPackagesimulatorPackageburst_configuration_h5datatype_measure_h5simulation_history_h5SimulationHistorySimulationHistory.current_stateSimulationHistory.current_stepSimulationHistory.fill_into()SimulationHistory.historySimulationHistory.integrator_noise_rng_state_algoSimulationHistory.integrator_noise_rng_state_cached_gaussSimulationHistory.integrator_noise_rng_state_has_gaussSimulationHistory.integrator_noise_rng_state_keysSimulationHistory.integrator_noise_rng_state_posSimulationHistory.monitor_namesSimulationHistory.monitor_stock_1SimulationHistory.monitor_stock_10SimulationHistory.monitor_stock_11SimulationHistory.monitor_stock_12SimulationHistory.monitor_stock_13SimulationHistory.monitor_stock_14SimulationHistory.monitor_stock_15SimulationHistory.monitor_stock_2SimulationHistory.monitor_stock_3SimulationHistory.monitor_stock_4SimulationHistory.monitor_stock_5SimulationHistory.monitor_stock_6SimulationHistory.monitor_stock_7SimulationHistory.monitor_stock_8SimulationHistory.monitor_stock_9SimulationHistory.populate_from()
SimulationHistoryH5
view_modelAdditiveNoiseViewModelBoldRegionROIViewModelBoldViewModelCortexViewModelDop853StochasticViewModelDop853ViewModelDopri5StochasticViewModelDopri5ViewModelEEGViewModelEulerDeterministicViewModelEulerStochasticViewModelGlobalAverageViewModelHeunDeterministicViewModelHeunStochasticViewModelIdentityViewModelIntegratorStochasticViewModelIntegratorViewModelIntegratorViewModelsEnumIntegratorViewModelsEnum.DIFFERENCE_EQUATIONIntegratorViewModelsEnum.DOPRI_5IntegratorViewModelsEnum.DOPRI_5_STOCHASTICIntegratorViewModelsEnum.DOP_853IntegratorViewModelsEnum.DOP_853_STOCHASTICIntegratorViewModelsEnum.EULERIntegratorViewModelsEnum.EULER_MARUYAMAIntegratorViewModelsEnum.HEUNIntegratorViewModelsEnum.RUNGE_KUTTAIntegratorViewModelsEnum.STOCHASTIC_HEUNIntegratorViewModelsEnum.STOCHASTIC_VARIABLE_ODER_ADAMSIntegratorViewModelsEnum.VARIABLE_ORDER_ADAMS
MEGViewModelMonitorViewModelMultiplicativeNoiseViewModelNoiseViewModelProjectionViewModelRawViewModelRungeKutta4thOrderDeterministicViewModelSimulatorAdapterModelSimulatorAdapterModel.connectivitySimulatorAdapterModel.determine_indexes_for_chosen_vars_of_interest()SimulatorAdapterModel.first_monitorSimulatorAdapterModel.get_variables_of_interest_indexes()SimulatorAdapterModel.history_gidSimulatorAdapterModel.integratorSimulatorAdapterModel.linked_has_traitsSimulatorAdapterModel.monitorsSimulatorAdapterModel.stimulusSimulatorAdapterModel.surface
SpatialAverageViewModelSubSampleViewModelTemporalAverageViewModelVODEStochasticViewModelVODEViewModeliEEGViewModel
filtersPackagechainFilterChainFilterChain.add_condition()FilterChain.algorithmFilterChain.algorithm_categoryFilterChain.algorithm_category_replacementFilterChain.algorithm_replacementFilterChain.datatypeFilterChain.datatype_replacementFilterChain.from_json()FilterChain.get_filters_for_type()FilterChain.get_python_filter_equivalent()FilterChain.get_sql_filter_equivalent()FilterChain.operationFilterChain.operation_replacementFilterChain.to_json()
UIFilter
exceptionsfactory
modelPackagemodel_burstBurstConfigurationBurstConfiguration.BURST_CANCELEDBurstConfiguration.BURST_ERRORBurstConfiguration.BURST_FINISHEDBurstConfiguration.BURST_RUNNINGBurstConfiguration.clone()BurstConfiguration.create_dateBurstConfiguration.datatypes_numberBurstConfiguration.dynamic_idsBurstConfiguration.error_messageBurstConfiguration.finish_timeBurstConfiguration.fk_metric_operation_groupBurstConfiguration.fk_operation_groupBurstConfiguration.fk_projectBurstConfiguration.fk_simulationBurstConfiguration.gidBurstConfiguration.idBurstConfiguration.is_finishedBurstConfiguration.is_groupBurstConfiguration.is_pse_burst()BurstConfiguration.metric_operation_groupBurstConfiguration.nameBurstConfiguration.operation_groupBurstConfiguration.operation_info_for_burst_removalBurstConfiguration.parent_burst_objectBurstConfiguration.process_timeBurstConfiguration.projectBurstConfiguration.range1BurstConfiguration.range2BurstConfiguration.rangesBurstConfiguration.selected_tabBurstConfiguration.simulator_gidBurstConfiguration.start_timeBurstConfiguration.statusBurstConfiguration.titleBurstConfiguration.type_
Dynamic
model_datatypeDataTypeDataType.accepted_filters()DataType.after_store()DataType.create_dateDataType.disk_sizeDataType.display_nameDataType.display_typeDataType.fill_from_generic_attributes()DataType.fill_from_h5()DataType.fill_from_has_traits()DataType.fixed_generic_attributesDataType.fk_datatype_groupDataType.fk_from_operationDataType.fk_parent_burstDataType.get_extra_info()DataType.gidDataType.idDataType.invalidDataType.is_nanDataType.is_tsDataType.moduleDataType.parent_operationDataType.stateDataType.subjectDataType.summary_infoDataType.titleDataType.typeDataType.type_DataType.user_tag_1DataType.user_tag_2DataType.user_tag_3DataType.user_tag_4DataType.user_tag_5DataType.visible
DataTypeGroupDataTypeGroup.count_resultsDataTypeGroup.create_dateDataTypeGroup.disk_sizeDataTypeGroup.fk_datatype_groupDataTypeGroup.fk_from_operationDataTypeGroup.fk_operation_groupDataTypeGroup.fk_parent_burstDataTypeGroup.gidDataTypeGroup.idDataTypeGroup.invalidDataTypeGroup.is_data_a_group()DataTypeGroup.is_nanDataTypeGroup.moduleDataTypeGroup.no_of_rangesDataTypeGroup.parent_operationDataTypeGroup.parent_operation_groupDataTypeGroup.stateDataTypeGroup.subjectDataTypeGroup.titleDataTypeGroup.typeDataTypeGroup.type_DataTypeGroup.user_tag_1DataTypeGroup.user_tag_2DataTypeGroup.user_tag_3DataTypeGroup.user_tag_4DataTypeGroup.user_tag_5DataTypeGroup.visible
DataTypeMatrixDataTypeMatrix.array_data_maxDataTypeMatrix.array_data_meanDataTypeMatrix.array_data_minDataTypeMatrix.array_has_complexDataTypeMatrix.array_is_finiteDataTypeMatrix.create_dateDataTypeMatrix.disk_sizeDataTypeMatrix.fill_from_has_traits()DataTypeMatrix.fk_datatype_groupDataTypeMatrix.fk_from_operationDataTypeMatrix.fk_parent_burstDataTypeMatrix.gidDataTypeMatrix.has_valid_time_seriesDataTypeMatrix.has_volume_mappingDataTypeMatrix.idDataTypeMatrix.invalidDataTypeMatrix.is_nanDataTypeMatrix.moduleDataTypeMatrix.ndimDataTypeMatrix.parent_operationDataTypeMatrix.parsed_shapeDataTypeMatrix.shapeDataTypeMatrix.stateDataTypeMatrix.subjectDataTypeMatrix.subtypeDataTypeMatrix.titleDataTypeMatrix.typeDataTypeMatrix.type_DataTypeMatrix.user_tag_1DataTypeMatrix.user_tag_2DataTypeMatrix.user_tag_3DataTypeMatrix.user_tag_4DataTypeMatrix.user_tag_5DataTypeMatrix.visible
LinksMeasurePointsSelectionStoredPSEFilter
model_operationAlgorithmAlgorithm.algorithm_categoryAlgorithm.classnameAlgorithm.datatype_filterAlgorithm.descriptionAlgorithm.displaynameAlgorithm.fk_categoryAlgorithm.group_descriptionAlgorithm.group_nameAlgorithm.idAlgorithm.last_introspection_checkAlgorithm.moduleAlgorithm.outputlistAlgorithm.parameter_nameAlgorithm.removedAlgorithm.required_datatypeAlgorithm.subsection_name
AlgorithmCategoryAlgorithmTransientGroupOperationOperation.additional_infoOperation.algorithmOperation.completion_dateOperation.create_dateOperation.estimated_disk_sizeOperation.fk_from_algoOperation.fk_launched_byOperation.fk_launched_inOperation.fk_operation_groupOperation.from_dict()Operation.gidOperation.has_finishedOperation.idOperation.mark_complete()Operation.operation_groupOperation.projectOperation.queue_fullOperation.range_valuesOperation.start_dateOperation.start_now()Operation.statusOperation.to_dict()Operation.userOperation.user_groupOperation.view_model_disk_sizeOperation.view_model_gidOperation.visible
OperationGroupOperationProcessIdentifierResultFigurehas_finished()
model_projectProjectProject.administratorProject.descriptionProject.disable_importsProject.fk_adminProject.from_dict()Project.gidProject.idProject.last_updatedProject.max_operation_sizeProject.membersProject.nameProject.operations_canceledProject.operations_errorProject.operations_finishedProject.operations_pendingProject.operations_startedProject.refresh_update_date()Project.to_dict()Project.version
UserUser.display_nameUser.emailUser.get_preference()User.get_project_structure_grouping()User.get_viewers_color_scheme()User.gidUser.idUser.is_administrator()User.is_online_help_active()User.passwordUser.preferencesUser.roleUser.selected_projectUser.set_preference()User.set_project_structure_grouping()User.set_viewers_color_scheme()User.switch_online_help_state()User.usernameUser.validated
UserPreferencesUser_to_Project
storagePackageDAOburst_daodatatype_daoDatatypeDAODatatypeDAO.compute_bursts_disk_size()DatatypeDAO.count_all_datatypes()DatatypeDAO.count_datatypes()DatatypeDAO.count_datatypes_in_burst()DatatypeDAO.count_datatypes_in_group()DatatypeDAO.get_all_datatypes()DatatypeDAO.get_data_in_project()DatatypeDAO.get_datatype_by_gid()DatatypeDAO.get_datatype_details()DatatypeDAO.get_datatype_extra_info()DatatypeDAO.get_datatype_group_by_gid()DatatypeDAO.get_datatype_group_disk_size()DatatypeDAO.get_datatype_in_group()DatatypeDAO.get_datatype_measure_group_from_ts_from_pse()DatatypeDAO.get_datatypegroup_by_op_group_id()DatatypeDAO.get_datatypegroup_for_project()DatatypeDAO.get_datatypes_for_range()DatatypeDAO.get_datatypes_from_datatype_group()DatatypeDAO.get_datatypes_in_project()DatatypeDAO.get_disk_size_for_operation()DatatypeDAO.get_last_data_with_uid()DatatypeDAO.get_linked_datatypes_in_project()DatatypeDAO.get_links_for_datatype()DatatypeDAO.get_number_of_bursts()DatatypeDAO.get_selections_for_project()DatatypeDAO.get_stored_pse_filters()DatatypeDAO.get_summary_for_group()DatatypeDAO.get_values_of_datatype()DatatypeDAO.is_datatype_group()DatatypeDAO.sessionDatatypeDAO.set_datatype_visibility()DatatypeDAO.try_load_last_entity_of_type()
exceptionsoperation_daoOperationDAOOperationDAO.compute_disk_size_for_started_ops()OperationDAO.count_resulted_datatypes()OperationDAO.filter_category()OperationDAO.get_adapters_from_categories()OperationDAO.get_algorithm_by_id()OperationDAO.get_algorithm_by_module()OperationDAO.get_algorithm_categories()OperationDAO.get_all_algorithms()OperationDAO.get_all_operations_for_uploaders()OperationDAO.get_applicable_adapters()OperationDAO.get_category_by_id()OperationDAO.get_figure_count()OperationDAO.get_filtered_operations()OperationDAO.get_launchable_categories()OperationDAO.get_operation_by_gid()OperationDAO.get_operation_by_id()OperationDAO.get_operation_lazy_by_gid()OperationDAO.get_operation_numbers()OperationDAO.get_operation_process_for_operation()OperationDAO.get_operationgroup_by_gid()OperationDAO.get_operationgroup_by_id()OperationDAO.get_operations()OperationDAO.get_operations_for_hpc_job()OperationDAO.get_operations_in_group()OperationDAO.get_operations_with_error_in_project()OperationDAO.get_previews()OperationDAO.get_raw_categories()OperationDAO.get_results_for_operation()OperationDAO.get_uploader_categories()OperationDAO.get_visualisers_categories()OperationDAO.is_upload_operation()OperationDAO.load_figure()OperationDAO.sessionOperationDAO.set_operation_and_group_visibility()OperationDAO.try_get_operation_by_id()
project_daoCaseDAOCaseDAO.add_members_to_project()CaseDAO.compute_user_generated_disk_size()CaseDAO.count_projects_for_name()CaseDAO.count_users_for_name()CaseDAO.delete_members_for_project()CaseDAO.delete_project()CaseDAO.get_administrators()CaseDAO.get_all_projects()CaseDAO.get_all_users()CaseDAO.get_link()CaseDAO.get_linkable_projects_for_user()CaseDAO.get_links_to_project()CaseDAO.get_members_of_project()CaseDAO.get_project_by_gid()CaseDAO.get_project_by_id()CaseDAO.get_project_by_name()CaseDAO.get_project_disk_size()CaseDAO.get_project_for_operation()CaseDAO.get_project_lazy_by_gid()CaseDAO.get_projects_for_user()CaseDAO.get_system_user()CaseDAO.get_user_by_email()CaseDAO.get_user_by_gid()CaseDAO.get_user_by_id()CaseDAO.get_user_by_name()CaseDAO.get_user_for_datatype()CaseDAO.session
root_daosession_makerworkflow_dao
transientPackagecontext_overlayCommonDetailsDataTypeOverlayDetailsDataTypeOverlayDetails.DATA_STATEDataTypeOverlayDetails.DATA_SUBJECTDataTypeOverlayDetails.DATA_TAG_1DataTypeOverlayDetails.DATA_TAG_2DataTypeOverlayDetails.DATA_TAG_3DataTypeOverlayDetails.DATA_TAG_4DataTypeOverlayDetails.DATA_TAG_5DataTypeOverlayDetails.DATA_TITLEDataTypeOverlayDetails.fill_from_datatype()
OperationOverlayDetails
range_parameterstructure_entitiesDataTypeMetaDataDataTypeMetaData.DEFAULT_SUBJECTDataTypeMetaData.KEY_AUTHORDataTypeMetaData.KEY_BURSTDataTypeMetaData.KEY_CLASS_NAMEDataTypeMetaData.KEY_COUNTDataTypeMetaData.KEY_CREATE_DATA_DAYDataTypeMetaData.KEY_CREATE_DATA_MONTHDataTypeMetaData.KEY_DATATYPE_IDDataTypeMetaData.KEY_DATEDataTypeMetaData.KEY_FK_OPERATION_GROUPDataTypeMetaData.KEY_GIDDataTypeMetaData.KEY_INVALIDDataTypeMetaData.KEY_LINKDataTypeMetaData.KEY_MODULEDataTypeMetaData.KEY_NODE_TYPEDataTypeMetaData.KEY_OPERATION_ALGORITHMDataTypeMetaData.KEY_OPERATION_GROUP_NAMEDataTypeMetaData.KEY_OPERATION_TAGDataTypeMetaData.KEY_OPERATION_TYPEDataTypeMetaData.KEY_OP_GROUP_IDDataTypeMetaData.KEY_RELEVANCYDataTypeMetaData.KEY_STATEDataTypeMetaData.KEY_SUBJECTDataTypeMetaData.KEY_TAG_1DataTypeMetaData.KEY_TAG_2DataTypeMetaData.KEY_TAG_3DataTypeMetaData.KEY_TAG_4DataTypeMetaData.KEY_TAG_5DataTypeMetaData.KEY_TITLEDataTypeMetaData.STATESDataTypeMetaData.create_dateDataTypeMetaData.get_filterable_meta()DataTypeMetaData.gidDataTypeMetaData.groupDataTypeMetaData.mark_invalid()DataTypeMetaData.merge_data()DataTypeMetaData.subject
StructureNodeStructureNode.PREFIX_ID_LEAFStructureNode.PREFIX_ID_NODEStructureNode.PREFIX_ID_PROJECTStructureNode.SEPStructureNode.TYPE_FILEStructureNode.TYPE_FOLDERStructureNode.TYPE_INVALIDStructureNode.has_childrenStructureNode.is_groupStructureNode.is_irelevantStructureNode.is_linkStructureNode.metadata2tree()StructureNode.type
neocomPackage_h5loader_registryh5determine_filepath()gather_all_references_by_index()gather_references_of_view_model()h5_file_for_gid()h5_file_for_index()index_for_h5_file()load()load_from_dir()load_from_gid()load_from_index()load_ht()load_view_model()load_view_model_from_file()load_with_links()load_with_links_from_dir()load_with_references()load_with_references_from_dir()path_by_dir()path_for()path_for_stored_index()store()store_complete()store_complete_to_dir()store_ht()store_to_dir()store_view_model()
neotraitsPackage_h5accessors_h5coreH5FileH5File.KEY_WRITTEN_BYH5File.close()H5File.determine_datatype_from_file()H5File.determine_type()H5File.file_name_base()H5File.from_file()H5File.gather_references()H5File.get_class_path()H5File.get_metadata_param()H5File.h5_class_from_file()H5File.is_new_fileH5File.iter_accessors()H5File.iter_datasets()H5File.load_generic_attributes()H5File.load_into()H5File.read_subtype_attr()H5File.store()H5File.store_generic_attributes()H5File.store_metadata_param()
ViewModelH5
dbformsh5spatial_modeluploader_view_modelview_model
project_versionsPackageservicesPackagealgorithm_serviceAlgorithmServiceAlgorithmService.create_link()AlgorithmService.fill_adapter_form()AlgorithmService.fill_selectfield_with_datatypes()AlgorithmService.get_algorithm_by_identifier()AlgorithmService.get_algorithm_by_module_and_class()AlgorithmService.get_analyze_groups()AlgorithmService.get_category_by_id()AlgorithmService.get_generic_entity()AlgorithmService.get_launchable_algorithms()AlgorithmService.get_launchable_algorithms_for_datatype()AlgorithmService.get_operation_numbers()AlgorithmService.get_raw_categories()AlgorithmService.get_selections_for_project()AlgorithmService.get_stored_pse_filters()AlgorithmService.get_upload_algorithms()AlgorithmService.get_visualisers_category()AlgorithmService.get_visualizers_for_group()AlgorithmService.prepare_adapter()AlgorithmService.prepare_adapter_form()AlgorithmService.remove_link()AlgorithmService.save_measure_points_selection()AlgorithmService.save_pse_filter()
authorizationbackend_client_factoryburst_config_serializationburst_serviceBurstServiceBurstService.LAUNCH_BRANCHBurstService.LAUNCH_NEWBurstService.get_available_bursts()BurstService.get_burst_for_operation_id()BurstService.get_range_param_by_name()BurstService.handle_range_params_at_loading()BurstService.load_burst_configuration()BurstService.load_burst_configuration_from_folder()BurstService.load_simulation_from_zip()BurstService.mark_burst_finished()BurstService.persist_operation_state()BurstService.populate_burst_disk_usage()BurstService.prepare_burst_for_pse()BurstService.prepare_data_for_burst_copy()BurstService.prepare_index_for_metric_result()BurstService.prepare_indexes_for_simulation_results()BurstService.prepare_metrics_operation()BurstService.prepare_simulation_name()BurstService.remove_burst_configuration()BurstService.rename_burst()BurstService.store_burst()BurstService.store_burst_configuration()BurstService.update_burst_status()BurstService.update_history_status()BurstService.update_simulation_fields()
email_senderexceptionsfigure_servicehpc_operation_serviceimport_serviceImportServiceImportService.build_operation_from_file()ImportService.check_import_references()ImportService.create_view_model()ImportService.import_list_of_operations()ImportService.import_operation()ImportService.import_project_structure()ImportService.import_simulator_configuration_zip()ImportService.load_datatype_from_file()ImportService.store_datatype()ImportService.store_or_link_datatype()
Operation2ImportData
operation_serviceOperationServiceOperationService.ATT_UIDOperationService.fire_operation()OperationService.fits_max_operation_size()OperationService.group_operation_launch()OperationService.initiate_operation()OperationService.initiate_prelaunch()OperationService.launch_operation()OperationService.load_operation()OperationService.prepare_metadata()OperationService.prepare_operation()OperationService.stop_operation()OperationService.store_view_model()
project_serviceProjectServiceProjectService.count_filtered_operations()ProjectService.find_project()ProjectService.find_project_lazy_by_gid()ProjectService.get_all_datatypes_from_data()ProjectService.get_all_operations_for_uploaders()ProjectService.get_datatype_by_id()ProjectService.get_datatype_details()ProjectService.get_datatype_in_group()ProjectService.get_datatypegroup_by_gid()ProjectService.get_datatypegroup_by_op_group_id()ProjectService.get_datatypes_from_datatype_group()ProjectService.get_datatypes_in_project()ProjectService.get_filterable_meta()ProjectService.get_linkable_projects_for_user()ProjectService.get_linked_datatypes_storage_path()ProjectService.get_operation_details()ProjectService.get_operation_group_by_gid()ProjectService.get_operation_group_by_id()ProjectService.get_operations_in_group()ProjectService.get_project_structure()ProjectService.get_results_for_operation()ProjectService.is_datatype_group()ProjectService.is_upload_operation()ProjectService.load_operation_by_gid()ProjectService.load_operation_lazy_by_gid()ProjectService.remove_datatype()ProjectService.remove_member_from_project()ProjectService.remove_operation()ProjectService.remove_project()ProjectService.retrieve_all_user_projects()ProjectService.retrieve_project_full()ProjectService.retrieve_projects_for_user()ProjectService.set_datatype_visibility()ProjectService.set_operation_and_group_visibility()ProjectService.store_project()ProjectService.update_metadata()
initialize_storage()
settings_serviceSettingsServiceSettingsService.KEYS_DISPLAY_ORDERSettingsService.KEY_ADMIN_DISPLAY_NAMESettingsService.KEY_ADMIN_EMAILSettingsService.KEY_ADMIN_NAMESettingsService.KEY_ADMIN_PWDSettingsService.KEY_CLUSTERSettingsService.KEY_CLUSTER_SCHEDULERSettingsService.KEY_DB_URLSettingsService.KEY_ENABLE_KC_LOGINSettingsService.KEY_KC_CONFIGSettingsService.KEY_KC_WEB_CONFIGSettingsService.KEY_MAX_DISK_SPACE_USRSettingsService.KEY_MAX_NR_SURFACE_VERTEXSettingsService.KEY_MAX_NR_THREADSSettingsService.KEY_MAX_RANGESettingsService.KEY_PORTSettingsService.KEY_SELECTED_DBSettingsService.KEY_STORAGESettingsService.check_db_url()SettingsService.get_disk_free_space()SettingsService.save_settings()
simulator_serviceSimulatorServiceSimulatorService.async_launch_and_prepare_pse()SimulatorService.async_launch_and_prepare_simulation()SimulatorService.async_launch_simulation_on_server()SimulatorService.compute_conn_branch_conditions()SimulatorService.get_simulation_state_index()SimulatorService.prepare_simulation_on_server()SimulatorService.reset_at_connectivity_change()SimulatorService.reset_at_surface_change()SimulatorService.validate_first_fragment()
texture_to_jsonuser_serviceUserServiceUserService.USER_ROLESUserService.check_login()UserService.compute_user_generated_disk_size()UserService.create_user()UserService.delete_user()UserService.edit_user()UserService.get_administrators()UserService.get_external_db_user()UserService.get_user_by_gid()UserService.get_user_by_id()UserService.get_user_by_name()UserService.get_users_for_project()UserService.is_username_valid()UserService.reset_password()UserService.retrieve_users_except()UserService.save_project_to_user()UserService.validate_user()
- Subpackages
backend_clientsPackagebackend_clientcluster_scheduler_clienthpc_scheduler_clientHPCJobStatusHPCOperationThreadHPCSchedulerClientHPCSchedulerClient.CONTAINER_INPUT_FOLDERHPCSchedulerClient.CSCS_DATA_FOLDERHPCSchedulerClient.CSCS_LOGIN_TOKEN_ENV_KEYHPCSchedulerClient.CSCS_PROJECTHPCSchedulerClient.HOME_FOLDER_MOUNTHPCSchedulerClient.OUTPUT_FOLDERHPCSchedulerClient.TVB_BIN_ENV_KEYHPCSchedulerClient.compute_available_disk_space()HPCSchedulerClient.execute()HPCSchedulerClient.stage_out_to_operation_folder()HPCSchedulerClient.stop_operation()HPCSchedulerClient.storage_interfaceHPCSchedulerClient.update_datatype_groups()HPCSchedulerClient.update_db_with_results()
get_op_thread()
standalone_client
interfacesPackage- Subpackages
commandPackagerestPackage- Subpackages
bids_monitorPackagebids_data_builderBIDSDataBuilderBIDSDataBuilder.create_archive()BIDSDataBuilder.create_dataset_json_files()BIDSDataBuilder.create_dataset_subjects()BIDSDataBuilder.files_build_data_check()BIDSDataBuilder.get_abs_path()BIDSDataBuilder.get_complete_paths()BIDSDataBuilder.get_connected_dependencies_paths()BIDSDataBuilder.get_data_files()BIDSDataBuilder.init_paths()BIDSDataBuilder.subject_build_data_check()
bids_dir_monitorlaunch_bids_monitor- Subpackages
testsPackagebids_monitor_testTestBIDSDataBuilderTestBIDSDataBuilder.TS_JSON_TO_COPYTestBIDSDataBuilder.TS_TO_COPYTestBIDSDataBuilder.extract_data()TestBIDSDataBuilder.extract_file_names()TestBIDSDataBuilder.get_storage_path()TestBIDSDataBuilder.pytestmarkTestBIDSDataBuilder.setup()TestBIDSDataBuilder.teardown_method()TestBIDSDataBuilder.test_create_bids_dataset()TestBIDSDataBuilder.test_monitor_bids_dataset()
clientPackageclient_decoratorsmain_apitvb_clientTVBClientTVBClient.add_members_to_project()TVBClient.browser_login()TVBClient.create_project()TVBClient.fire_simulation()TVBClient.get_data_in_project()TVBClient.get_extra_info()TVBClient.get_operation_results()TVBClient.get_operation_status()TVBClient.get_operations_for_datatype()TVBClient.get_operations_in_project()TVBClient.get_project_list()TVBClient.get_users()TVBClient.launch_operation()TVBClient.load_datatype_from_file()TVBClient.load_datatype_with_full_references()TVBClient.load_datatype_with_links()TVBClient.logout()TVBClient.open_browser()TVBClient.quick_launch_operation()TVBClient.retrieve_datatype()TVBClient.update_auth_token()
- Subpackages
commonsPackagedecodersdtosexceptionsfiles_helperstatus_codesstringsFormKeyInputLinkPlaceholderRequestFileKeyRestLinkRestLink.DATATYPE_EXTRA_INFORestLink.DATATYPE_OPERATIONSRestLink.DATA_IN_PROJECTRestLink.FIRE_SIMULATIONRestLink.GET_DATATYPERestLink.IS_DATA_ENCRYPTEDRestLink.LAUNCH_OPERATIONRestLink.LOGINRestLink.OPERATIONS_IN_PROJECTRestLink.OPERATION_RESULTSRestLink.OPERATION_STATUSRestLink.PROJECTSRestLink.PROJECT_MEMBERSRestLink.USEFUL_URLSRestLink.compute_url()
RestNamespaceStrings
serverPackage
- Subpackages
webPackageoperations_assignerrequest_handlerrunrun_landing_pagestructureWebStructureWebStructure.ANALYZERS_ONLINE_HELP_SHORTCUTSWebStructure.SECTION_ANALYZEWebStructure.SECTION_BURSTWebStructure.SECTION_CONNECTIVITYWebStructure.SECTION_PROJECTWebStructure.SECTION_STIMULUSWebStructure.SECTION_USERWebStructure.SUB_SECTION_ACCOUNTWebStructure.SUB_SECTION_ALLENWebStructure.SUB_SECTION_ANALYZE_1WebStructure.SUB_SECTION_ANALYZE_10WebStructure.SUB_SECTION_ANALYZE_11WebStructure.SUB_SECTION_ANALYZE_12WebStructure.SUB_SECTION_ANALYZE_13WebStructure.SUB_SECTION_ANALYZE_14WebStructure.SUB_SECTION_ANALYZE_15WebStructure.SUB_SECTION_ANALYZE_16WebStructure.SUB_SECTION_ANALYZE_17WebStructure.SUB_SECTION_ANALYZE_18WebStructure.SUB_SECTION_ANALYZE_2WebStructure.SUB_SECTION_ANALYZE_3WebStructure.SUB_SECTION_ANALYZE_4WebStructure.SUB_SECTION_ANALYZE_5WebStructure.SUB_SECTION_ANALYZE_6WebStructure.SUB_SECTION_ANALYZE_7WebStructure.SUB_SECTION_ANALYZE_8WebStructure.SUB_SECTION_ANALYZE_9WebStructure.SUB_SECTION_ANALYZE_MENUWebStructure.SUB_SECTION_BURSTWebStructure.SUB_SECTION_CONNECTIVITYWebStructure.SUB_SECTION_CONNECTIVITY_MENUWebStructure.SUB_SECTION_DATA_STRUCTUREWebStructure.SUB_SECTION_FIGURESWebStructure.SUB_SECTION_LIST_PROJECTSWebStructure.SUB_SECTION_LOCAL_CONNECTIVITYWebStructure.SUB_SECTION_LOGINWebStructure.SUB_SECTION_MODEL_REGIONSWebStructure.SUB_SECTION_MODEL_SURFACEWebStructure.SUB_SECTION_NOISE_CONFIGURATIONWebStructure.SUB_SECTION_OPERATIONSWebStructure.SUB_SECTION_PHASE_PLANEWebStructure.SUB_SECTION_PROJECT_MENUWebStructure.SUB_SECTION_PROPERTIES_PROJECTWebStructure.SUB_SECTION_SIIBRAWebStructure.SUB_SECTION_STIMULUS_MENUWebStructure.SUB_SECTION_STIMULUS_REGIONWebStructure.SUB_SECTION_STIMULUS_SURFACEWebStructure.SUB_SECTION_VIEW_0WebStructure.SUB_SECTION_VIEW_1WebStructure.SUB_SECTION_VIEW_10WebStructure.SUB_SECTION_VIEW_11WebStructure.SUB_SECTION_VIEW_12WebStructure.SUB_SECTION_VIEW_13WebStructure.SUB_SECTION_VIEW_14WebStructure.SUB_SECTION_VIEW_15WebStructure.SUB_SECTION_VIEW_16WebStructure.SUB_SECTION_VIEW_17WebStructure.SUB_SECTION_VIEW_18WebStructure.SUB_SECTION_VIEW_19WebStructure.SUB_SECTION_VIEW_2WebStructure.SUB_SECTION_VIEW_20WebStructure.SUB_SECTION_VIEW_21WebStructure.SUB_SECTION_VIEW_22WebStructure.SUB_SECTION_VIEW_23WebStructure.SUB_SECTION_VIEW_24WebStructure.SUB_SECTION_VIEW_25WebStructure.SUB_SECTION_VIEW_3WebStructure.SUB_SECTION_VIEW_4WebStructure.SUB_SECTION_VIEW_5WebStructure.SUB_SECTION_VIEW_6WebStructure.SUB_SECTION_VIEW_7WebStructure.SUB_SECTION_VIEW_8WebStructure.SUB_SECTION_VIEW_9WebStructure.VISUALIZERS_ONLINE_HELP_SHORTCUTSWebStructure.WEB_SECTION_TITLESWebStructure.WEB_SUBSECTION_TITLES
- Subpackages
controllersPackageautologgingbase_controllerBaseControllerBaseController.MAX_SIZE_ERROR_MSGBaseController.build_path()BaseController.error()BaseController.fill_default_attributes()BaseController.fill_overlay_attributes()BaseController.get_url_adapter()BaseController.index()BaseController.mark_file_for_delete()BaseController.redirect()BaseController.render_adapter_form()BaseController.showBlockerOverlay()BaseController.tvb()BaseController.update_operations_count()
commonInvalidFormValuesMissingDataExceptionNotAllowedNotAuthenticatedadd2session()expire_session()get_current_project()get_from_session()get_logged_user()get_message_from_session()has_error_message()pop_message_from_session()remove_from_session()remove_project_from_session()set_error_message()set_important_message()set_info_message()set_message()set_warning_message()
decoratorsflow_controllerFlowControllerFlowController.NEW_SELECTION_NAMEFlowController.cancel_or_remove_operation()FlowController.create_row_of_specs()FlowController.default()FlowController.execute_post()FlowController.fill_default_attributes()FlowController.get_adapter_template()FlowController.get_available_selections()FlowController.get_filtered_datatypes()FlowController.get_pse_filters()FlowController.get_simple_adapter_interface()FlowController.get_template_for_adapter()FlowController.getadapterinterface()FlowController.invoke_adapter()FlowController.prepare_group_launch()FlowController.read_binary_datatype_attribute()FlowController.read_datatype_attribute()FlowController.read_from_h5_file()FlowController.readserverstaticfile()FlowController.refresh_subform()FlowController.reload_burst_operation()FlowController.reloadoperation()FlowController.show_group_of_algorithms()FlowController.step_analyzers()FlowController.step_connectivity()FlowController.store_exploration_section()FlowController.store_measure_points_selection()FlowController.store_pse_filter()
hpc_controllerkube_controllersettings_controllerusers_controllerEditUserFormKeycloakLoginFormLoginFormRecoveryFormRegisterFormUniqueUsernameUserControllerUserController.base_url()UserController.check_sso()UserController.create_new()UserController.fill_default_attributes()UserController.get_color_schemes_json()UserController.get_viewer_color_scheme()UserController.index()UserController.is_storage_ready()UserController.keycloak_web_config()UserController.logout()UserController.profile()UserController.recoverpassword()UserController.register()UserController.set_viewer_color_scheme()UserController.switch_online_help()UserController.usermanagement()UserController.validate()
- Subpackages
burstPackagebase_controllerdynamic_model_controllerDynamicDynamicModelControllerDynamicModelController.KEY_CACHED_DYNAMIC_MODELDynamicModelController.LOGGERDynamicModelController.dynamic_detail()DynamicModelController.fill_default_attributes()DynamicModelController.get_cached_dynamic()DynamicModelController.graph_changed()DynamicModelController.index()DynamicModelController.integrator_parameters_changed()DynamicModelController.model_changed()DynamicModelController.parameters_changed()DynamicModelController.refresh_subform()DynamicModelController.submit()DynamicModelController.trajectories()
SessionCache
exploration_controllerParameterExplorationControllerParameterExplorationController.draw_discrete_exploration()ParameterExplorationController.draw_isocline_exploration()ParameterExplorationController.get_default_pse_viewer()ParameterExplorationController.get_metric_matrix()ParameterExplorationController.get_node_matrix()ParameterExplorationController.get_series_array_discrete()ParameterExplorationController.pse_error()
matjaxnoise_configuration_controllerregion_model_parameters_controllertransfer_vector_controllerTransferVectorControllerTransferVectorController.apply_transfer_function()TransferVectorController.base_urlTransferVectorController.clear_histogram()TransferVectorController.fill_default_attributes()TransferVectorController.get_equation_chart()TransferVectorController.index()TransferVectorController.no_connectivity_measure_page()TransferVectorController.set_connectivity_measure()TransferVectorController.set_model_parameter()TransferVectorController.set_transfer_function_param()TransferVectorController.submit_model_parameter()TransferVectorController.title
helpPackageprojectPackagefigure_controllerproject_controllerEditFormProjectControllerProjectController.KEY_OPERATION_FILTERSProjectController.NODE_OPERATION_GROUP_TYPEProjectController.NODE_OPERATION_TYPEProjectController.PRROJECTS_FOR_LINK_KEYProjectController.PRROJECTS_LINKED_KEYProjectController.createlink()ProjectController.downloaddatatype()ProjectController.downloadproject()ProjectController.editone()ProjectController.editstructure()ProjectController.fill_default_attributes()ProjectController.generate_call_out_control()ProjectController.get_data_uploader_overlay()ProjectController.get_datatype_details()ProjectController.get_linkable_projects()ProjectController.get_operation_details()ProjectController.get_project_structure_grouping()ProjectController.get_project_uploader_overlay()ProjectController.getmemberspage()ProjectController.index()ProjectController.launchloader()ProjectController.noderemove()ProjectController.projectupload()ProjectController.readjsonstructure()ProjectController.removelink()ProjectController.set_project_structure_grouping()ProjectController.set_visibility()ProjectController.show_confirmation_overlay()ProjectController.updatemetadata()ProjectController.viewall()ProjectController.viewoperations()
simulatorPackagemonitors_wizard_handlerMonitorsWizardHandlerMonitorsWizardHandler.get_current_and_next_monitor_form()MonitorsWizardHandler.get_fragment_after_monitors()MonitorsWizardHandler.handle_next_fragment_for_monitors()MonitorsWizardHandler.prepare_monitor_fragment()MonitorsWizardHandler.prepare_monitor_legend()MonitorsWizardHandler.prepare_next_fragment_after_noise()MonitorsWizardHandler.set_monitors_list_on_simulator()MonitorsWizardHandler.update_monitor()
simulator_controllerSimulatorControllerSimulatorController.BRANCH_NAME_FORMATSimulatorController.COPY_NAME_FORMATSimulatorController.KEY_IS_LOAD_AFTER_REDIRECTSimulatorController.KEY_KEEP_SAME_SIM_WIZARDSimulatorController.branch_simulator_configuration()SimulatorController.build_monitor_url()SimulatorController.cancel_or_remove_burst()SimulatorController.cancel_or_remove_operation()SimulatorController.copy_simulator_configuration()SimulatorController.export()SimulatorController.get_first_monitor_fragment_url()SimulatorController.get_history_status()SimulatorController.get_last_fragment_url()SimulatorController.get_upload_overlay()SimulatorController.get_url_after_monitor_equation()SimulatorController.get_url_after_monitors()SimulatorController.get_url_for_final_fragment()SimulatorController.get_urls_for_next_monitor_fragment()SimulatorController.index()SimulatorController.launch_pse()SimulatorController.launch_simulation()SimulatorController.load_burst_history()SimulatorController.load_burst_read_only()SimulatorController.load_simulator_configuration_from_zip()SimulatorController.prepare_first_fragment()SimulatorController.rename_burst()SimulatorController.reset_simulator_configuration()SimulatorController.set_connectivity()SimulatorController.set_cortex()SimulatorController.set_coupling_params()SimulatorController.set_fragment_url()SimulatorController.set_integrator()SimulatorController.set_integrator_params()SimulatorController.set_model()SimulatorController.set_model_params()SimulatorController.set_monitor_equation()SimulatorController.set_monitor_params()SimulatorController.set_monitors()SimulatorController.set_noise_equation_params()SimulatorController.set_noise_params()SimulatorController.set_pse_params()SimulatorController.set_stimulus()SimulatorController.set_surface()SimulatorController.setup_pse()
simulator_fragment_rendering_rulesSimulatorFragmentRenderingRulesSimulatorFragmentRenderingRules.FIRST_FORM_URLSimulatorFragmentRenderingRules.disable_fieldsSimulatorFragmentRenderingRules.hide_launch_and_setup_pse_buttonSimulatorFragmentRenderingRules.hide_previous_buttonSimulatorFragmentRenderingRules.include_branch_buttonSimulatorFragmentRenderingRules.include_launch_buttonSimulatorFragmentRenderingRules.include_launch_pse_buttonSimulatorFragmentRenderingRules.include_next_buttonSimulatorFragmentRenderingRules.include_previous_buttonSimulatorFragmentRenderingRules.include_setup_noiseSimulatorFragmentRenderingRules.include_setup_pseSimulatorFragmentRenderingRules.include_setup_region_modelSimulatorFragmentRenderingRules.include_setup_surface_modelSimulatorFragmentRenderingRules.load_readonlySimulatorFragmentRenderingRules.to_dict()
simulator_wizzard_urlsSimulatorWizzardURLsSimulatorWizzardURLs.LAUNCH_PSE_URLSimulatorWizzardURLs.SETUP_PSE_URLSimulatorWizzardURLs.SET_CONNECTIVITY_URLSimulatorWizzardURLs.SET_CORTEX_URLSimulatorWizzardURLs.SET_COUPLING_PARAMS_URLSimulatorWizzardURLs.SET_INTEGRATOR_PARAMS_URLSimulatorWizzardURLs.SET_INTEGRATOR_URLSimulatorWizzardURLs.SET_MODEL_PARAMS_URLSimulatorWizzardURLs.SET_MODEL_URLSimulatorWizzardURLs.SET_MONITORS_URLSimulatorWizzardURLs.SET_MONITOR_EQUATION_URLSimulatorWizzardURLs.SET_MONITOR_PARAMS_URLSimulatorWizzardURLs.SET_NOISE_EQUATION_PARAMS_URLSimulatorWizzardURLs.SET_NOISE_PARAMS_URLSimulatorWizzardURLs.SET_PSE_PARAMS_URLSimulatorWizzardURLs.SET_STIMULUS_URLSimulatorWizzardURLs.SET_SURFACE_URL
spatialPackagebase_spatio_temporal_controllerSpatioTemporalControllerSpatioTemporalController.MSG_MISSING_SURFACESpatioTemporalController.display_surface()SpatioTemporalController.fill_default_attributes()SpatioTemporalController.get_series_json()SpatioTemporalController.get_ui_message()SpatioTemporalController.get_x_axis_range()SpatioTemporalController.index()SpatioTemporalController.render_spatial_form()
local_connectivity_controllerLocalConnectivityControllerLocalConnectivityController.CUTOFF_FIELDLocalConnectivityController.DISPLAY_NAME_FIELDLocalConnectivityController.EQUATION_FIELDLocalConnectivityController.EQUATION_PARAMS_FIELDLocalConnectivityController.SURFACE_FIELDLocalConnectivityController.base_urlLocalConnectivityController.compute_data_for_gradient_view()LocalConnectivityController.create_local_connectivity()LocalConnectivityController.fill_default_attributes()LocalConnectivityController.get_equation_chart()LocalConnectivityController.get_series_json()LocalConnectivityController.load_local_connectivity()LocalConnectivityController.reset_local_connectivity()LocalConnectivityController.set_cutoff_value()LocalConnectivityController.set_display_name()LocalConnectivityController.set_equation_param()LocalConnectivityController.set_surface()LocalConnectivityController.step_1()LocalConnectivityController.step_2()
region_stimulus_controllerRegionStimulusControllerRegionStimulusController.CONNECTIVITY_FIELDRegionStimulusController.DISPLAY_NAME_FIELDRegionStimulusController.MSG_MISSING_CONNECTIVITYRegionStimulusController.TEMPORAL_FIELDRegionStimulusController.TEMPORAL_PARAMS_FIELDRegionStimulusController.base_urlRegionStimulusController.create_stimulus()RegionStimulusController.display_connectivity()RegionStimulusController.do_step()RegionStimulusController.fill_default_attributes()RegionStimulusController.get_equation_chart()RegionStimulusController.load_region_stimulus()RegionStimulusController.reset_region_stimulus()RegionStimulusController.set_connectivity()RegionStimulusController.set_display_name()RegionStimulusController.set_temporal_param()RegionStimulusController.step_1()RegionStimulusController.step_1_submit()RegionStimulusController.step_2()RegionStimulusController.step_2_submit()RegionStimulusController.update_scaling()
surface_model_parameters_controllerSurfaceModelParametersControllerSurfaceModelParametersController.EQUATION_FIELDSurfaceModelParametersController.EQUATION_PARAMS_FIELDSurfaceModelParametersController.MODEL_PARAM_FIELDSurfaceModelParametersController.apply_equation()SurfaceModelParametersController.apply_focal_point()SurfaceModelParametersController.base_urlSurfaceModelParametersController.edit_model_parameters()SurfaceModelParametersController.fill_default_attributes()SurfaceModelParametersController.get_data_from_burst_configuration()SurfaceModelParametersController.get_equation_chart()SurfaceModelParametersController.get_focal_points()SurfaceModelParametersController.remove_focal_point()SurfaceModelParametersController.set_equation_param()SurfaceModelParametersController.set_model_parameter()SurfaceModelParametersController.submit_model_parameters()
surface_stimulus_controllerSurfaceStimulusControllerSurfaceStimulusController.DISPLAY_NAME_FIELDSurfaceStimulusController.SPATIAL_FIELDSurfaceStimulusController.SPATIAL_PARAMS_FIELDSurfaceStimulusController.SURFACE_FIELDSurfaceStimulusController.TEMPORAL_FIELDSurfaceStimulusController.TEMPORAL_PARAMS_FIELDSurfaceStimulusController.base_urlSurfaceStimulusController.create_stimulus()SurfaceStimulusController.do_step()SurfaceStimulusController.fill_default_attributes()SurfaceStimulusController.get_spatial_equation_chart()SurfaceStimulusController.get_stimulus_chunk()SurfaceStimulusController.get_temporal_equation_chart()SurfaceStimulusController.load_surface_stimulus()SurfaceStimulusController.reload_default()SurfaceStimulusController.set_display_name()SurfaceStimulusController.set_spatial_param()SurfaceStimulusController.set_surface()SurfaceStimulusController.set_temporal_param()SurfaceStimulusController.step_1()SurfaceStimulusController.step_1_submit()SurfaceStimulusController.step_2()SurfaceStimulusController.step_2_submit()SurfaceStimulusController.view_stimulus()
entitiesPackagecontext_model_parametersSurfaceContextModelParametersSurfaceContextModelParameters.apply_equation()SurfaceContextModelParameters.apply_focal_point()SurfaceContextModelParameters.get_configure_info()SurfaceContextModelParameters.get_data_for_model_param()SurfaceContextModelParameters.get_equation_for_parameter()SurfaceContextModelParameters.get_equation_information()SurfaceContextModelParameters.get_focal_points_for_parameter()SurfaceContextModelParameters.remove_focal_point()SurfaceContextModelParameters.reset_equations_for_all_parameters()SurfaceContextModelParameters.reset_param_equation()
context_overlaycontext_selected_adaptercontext_simulatorSimulatorContextSimulatorContext.KEY_BURST_CONFIGSimulatorContext.KEY_IS_SIMULATOR_BRANCHSimulatorContext.KEY_IS_SIMULATOR_COPYSimulatorContext.KEY_IS_SIMULATOR_LOADSimulatorContext.KEY_LAST_LOADED_FORM_URLSimulatorContext.KEY_SIMULATOR_CONFIGSimulatorContext.add_branch_and_copy_to_session()SimulatorContext.add_last_loaded_form_url_to_session()SimulatorContext.add_simulator_load_to_session()SimulatorContext.burst_configSimulatorContext.clean_project_data_from_session()SimulatorContext.get_common_params()SimulatorContext.init_session_at_burst_loading()SimulatorContext.init_session_at_copy_preparation()SimulatorContext.init_session_at_sim_config_from_zip()SimulatorContext.init_session_at_sim_reset()SimulatorContext.last_loaded_fragment_urlSimulatorContext.logged_userSimulatorContext.projectSimulatorContext.remove_burst_config_from_session()SimulatorContext.set_burst_config()SimulatorContext.set_simulator()SimulatorContext.set_warning_message()SimulatorContext.simulator
context_transfer_vector
- Subpackages
storagePackagestorage_interfaceStorageInterfaceStorageInterface.EXPORTED_SIMULATION_DTS_DIRStorageInterface.EXPORTED_SIMULATION_NAMEStorageInterface.EXPORT_FOLDERStorageInterface.EXPORT_FOLDER_NAMEStorageInterface.FILE_NAME_STRUCTUREStorageInterface.IMAGES_FOLDERStorageInterface.OPERATION_FOLDER_PREFIXStorageInterface.PROJECTS_FOLDERStorageInterface.ROOT_NODE_PATHStorageInterface.TEMP_FOLDERStorageInterface.TVB_PROJECT_FILEStorageInterface.TVB_STORAGE_FILE_EXTENSIONStorageInterface.TVB_XML_FILE_EXTENSIONStorageInterface.TVB_ZIP_FILE_EXTENSIONStorageInterface.app_encryption_handler()StorageInterface.check_and_delete()StorageInterface.check_created()StorageInterface.compute_recursive_h5_disk_usage()StorageInterface.compute_size_on_disk()StorageInterface.copy_file()StorageInterface.dec_running_op_count()StorageInterface.encryption_enabled()StorageInterface.ends_with_tvb_file_extension()StorageInterface.ends_with_tvb_storage_file_extension()StorageInterface.export_datatype_from_rest_server()StorageInterface.export_datatypes()StorageInterface.export_datatypes_structure()StorageInterface.export_project()StorageInterface.export_simulator_configuration()StorageInterface.get_allen_mouse_cache_folder()StorageInterface.get_encryption_handler()StorageInterface.get_filename()StorageInterface.get_filenames_in_zip()StorageInterface.get_images_folder()StorageInterface.get_import_export_encryption_handler()StorageInterface.get_project_folder()StorageInterface.get_project_meta_file_path()StorageInterface.get_projects_folder()StorageInterface.get_storage_manager()StorageInterface.get_temp_folder()StorageInterface.import_datatype_to_rest_client()StorageInterface.inc_project_usage_count()StorageInterface.inc_running_op_count()StorageInterface.is_in_usage()StorageInterface.join()StorageInterface.loggerStorageInterface.mark_stop()StorageInterface.move_datatype_with_sync()StorageInterface.open_tvb_zip()StorageInterface.path_by_dir()StorageInterface.path_for()StorageInterface.prepare_encryption()StorageInterface.push_folder_to_sync()StorageInterface.read_metadata_from_xml()StorageInterface.read_project_metadata()StorageInterface.remove_figure()StorageInterface.remove_files()StorageInterface.remove_folder()StorageInterface.remove_operation_data()StorageInterface.remove_project()StorageInterface.rename_project()StorageInterface.run()StorageInterface.set_project_active()StorageInterface.set_project_inactive()StorageInterface.start()StorageInterface.startup_cleanup()StorageInterface.sync_folders()StorageInterface.unpack_zip()StorageInterface.write_image_metadata()StorageInterface.write_metadata_in_xml()StorageInterface.write_project_metadata()StorageInterface.write_project_metadata_from_dict()StorageInterface.write_zip_folder()
- Subpackages
h5Packagedecoratorsutils- Subpackages
encryptionPackagedata_encryption_handlerDataEncryptionHandlerDataEncryptionHandler.APP_ENCRYPTION_HANDLERDataEncryptionHandler.CRYPTO_PASSDataEncryptionHandler.ENCRYPTED_FOLDER_SUFFIXDataEncryptionHandler.KEYS_FOLDERDataEncryptionHandler.app_encryption_handler()DataEncryptionHandler.check_and_delete()DataEncryptionHandler.compute_encrypted_folder_path()DataEncryptionHandler.dec_queue_count()DataEncryptionHandler.dec_running_op_count()DataEncryptionHandler.encryption_enabled()DataEncryptionHandler.file_helperDataEncryptionHandler.inc_project_usage_count()DataEncryptionHandler.inc_running_op_count()DataEncryptionHandler.is_in_usage()DataEncryptionHandler.linked_projectsDataEncryptionHandler.lockDataEncryptionHandler.marked_for_deleteDataEncryptionHandler.project_key_path()DataEncryptionHandler.push_folder_to_sync()DataEncryptionHandler.queue_elements_countDataEncryptionHandler.running_operationsDataEncryptionHandler.set_project_active()DataEncryptionHandler.set_project_inactive()DataEncryptionHandler.startup_cleanup()DataEncryptionHandler.sync_folders()DataEncryptionHandler.sync_project_queueDataEncryptionHandler.users_project_usage
DataEncryptionHandlerBuilderDataEncryptionHandlerMetaDataEncryptionRemoteHandlerDataEncryptionRemoteHandler.check_and_delete()DataEncryptionRemoteHandler.dec_queue_count()DataEncryptionRemoteHandler.dec_running_op_count()DataEncryptionRemoteHandler.inc_project_usage_count()DataEncryptionRemoteHandler.inc_running_op_count()DataEncryptionRemoteHandler.is_in_usage()DataEncryptionRemoteHandler.lockDataEncryptionRemoteHandler.push_folder_to_sync()DataEncryptionRemoteHandler.set_project_active()DataEncryptionRemoteHandler.set_project_inactive()DataEncryptionRemoteHandler.startup_cleanup()DataEncryptionRemoteHandler.sync_folders()
FoldersQueueConsumerInvalidStorageEncryptionException
encryption_handlerEncryptionHandlerEncryptionHandler.cleanup_encryption_handler()EncryptionHandler.decrypt_files_to_dir()EncryptionHandler.decrypt_results_to_dir()EncryptionHandler.encrypt_inputs()EncryptionHandler.encrypted_dir_name_regexEncryptionHandler.encrypted_suffixEncryptionHandler.generate_random_password()EncryptionHandler.get_encrypted_dir()EncryptionHandler.get_password_file()
import_export_encryption_handlerImportExportEncryptionHandlerImportExportEncryptionHandler.DECRYPTED_DATA_SUFFIXImportExportEncryptionHandler.ENCRYPTED_DATA_SUFFIXImportExportEncryptionHandler.ENCRYPTED_PASSWORD_NAMEImportExportEncryptionHandler.PRIVATE_KEY_NAMEImportExportEncryptionHandler.PUBLIC_KEY_NAMEImportExportEncryptionHandler.add_encrypted_suffix()ImportExportEncryptionHandler.decrypt_content()ImportExportEncryptionHandler.encrypt_and_save_password()ImportExportEncryptionHandler.encrypt_data_at_export()ImportExportEncryptionHandler.encrypt_password()ImportExportEncryptionHandler.extract_encrypted_password_from_list()ImportExportEncryptionHandler.generate_public_private_key_pair()ImportExportEncryptionHandler.get_path_to_encrypt()ImportExportEncryptionHandler.load_public_key()ImportExportEncryptionHandler.save_encrypted_password()
filePackageexceptionsfiles_helperFilesHelperFilesHelper.ALLEN_MOUSE_CONNECTIVITY_CACHE_FOLDERFilesHelper.PROJECTS_FOLDERFilesHelper.check_created()FilesHelper.compute_recursive_h5_disk_usage()FilesHelper.compute_size_on_disk()FilesHelper.copy_file()FilesHelper.get_allen_mouse_cache_folder()FilesHelper.get_images_folder()FilesHelper.get_project_folder()FilesHelper.get_project_folder_from_h5()FilesHelper.get_project_meta_file_path()FilesHelper.get_projects_folder()FilesHelper.move_datatype()FilesHelper.read_project_metadata()FilesHelper.remove_figure()FilesHelper.remove_files()FilesHelper.remove_folder()FilesHelper.remove_operation_data()FilesHelper.rename_project_structure()FilesHelper.write_image_metadata()FilesHelper.write_project_metadata()FilesHelper.write_project_metadata_from_dict()
TvbZip
hdf5_storage_managerHDF5StorageManagerHDF5StorageManager.BOOL_VALUE_PREFIXHDF5StorageManager.DATETIME_VALUE_PREFIXHDF5StorageManager.DATE_TIME_FORMATHDF5StorageManager.H5pyStorageBufferHDF5StorageManager.LOCKSHDF5StorageManager.ROOT_NODE_PATHHDF5StorageManager.TVB_ATTRIBUTE_PREFIXHDF5StorageManager.append_data()HDF5StorageManager.close_file()HDF5StorageManager.get_data()HDF5StorageManager.get_data_shape()HDF5StorageManager.get_file_data_version()HDF5StorageManager.get_metadata()HDF5StorageManager.is_valid_tvb_file()HDF5StorageManager.remove_data()HDF5StorageManager.remove_metadata()HDF5StorageManager.serialize_bool()HDF5StorageManager.set_metadata()HDF5StorageManager.store_data()
xml_metadata_handlers
kubePackage
analyzersPackagefftfmri_balloonBalloonModelBalloonModel.E0BalloonModel.RBMBalloonModel.TEBalloonModel.V0BalloonModel.alphaBalloonModel.balloon_dfun()BalloonModel.bold_modelBalloonModel.compute_derived_parameters()BalloonModel.epsilonBalloonModel.evaluate()BalloonModel.extended_result_size()BalloonModel.input_transformation()BalloonModel.integratorBalloonModel.neural_input_transformationBalloonModel.normalize_neural_inputBalloonModel.nu_0BalloonModel.r_0BalloonModel.result_shape()BalloonModel.result_size()BalloonModel.tau_fBalloonModel.tau_oBalloonModel.tau_sBalloonModel.time_series
BoldModelsNeuralInputTransformations
graphicaica_algorithminfometric_kuramoto_indexmetric_proxy_metastabilitymetric_variance_globalmetric_variance_of_node_variancenode_coherencenode_complex_coherencepcawavelet
basicPackageexceptionsprofileTvbProfileTvbProfile.ALLTvbProfile.COMMAND_PROFILETvbProfile.CURRENT_PROFILE_NAMETvbProfile.LIBRARY_PROFILETvbProfile.MATLAB_PROFILETvbProfile.REGISTERED_PROFILESTvbProfile.TEST_LIBRARY_PROFILETvbProfile.TEST_POSTGRES_PROFILETvbProfile.TEST_SQLITE_PROFILETvbProfile.WEB_PROFILETvbProfile.currentTvbProfile.envTvbProfile.is_first_run()TvbProfile.is_library_mode()TvbProfile.set_profile()
readers- Subpackages
configPackageenvironmentEnvironmentEnvironment.PYTHON_FOLDEREnvironment.append_to_path()Environment.get_library_folder()Environment.is_distribution()Environment.is_framework_present()Environment.is_linux()Environment.is_linux_deployment()Environment.is_mac()Environment.is_mac_deployment()Environment.is_windows()Environment.is_windows_deployment()Environment.setup_python_path()Environment.setup_tk_tcl_environ()
profile_settingsBaseSettingsProfileBaseSettingsProfile.ACCESS_MODE_TVB_FILESBaseSettingsProfile.BIN_FOLDERBaseSettingsProfile.DEFAULT_STORAGEBaseSettingsProfile.FIRST_RUN_STORAGEBaseSettingsProfile.LOGGER_CONFIG_FILE_NAMEBaseSettingsProfile.MAGIC_NUMBERBaseSettingsProfile.PYTHON_INTERPRETER_PATHBaseSettingsProfile.TVB_CONFIG_FILEBaseSettingsProfile.TVB_USER_HOMEBaseSettingsProfile.initialize_for_deployment()BaseSettingsProfile.initialize_profile()BaseSettingsProfile.prepare_for_operation_mode()
LibrarySettingsProfileMATLABLibraryProfileTestLibraryProfile
settingsClusterSettingsClusterSettings.CLUSTER_NODE_NAMEClusterSettings.IN_OPERATION_EXECUTION_PROCESSClusterSettings.IS_RUNNING_ON_CLUSTER_NODEClusterSettings.JOB_ID_STRINGClusterSettings.NODE_ENVClusterSettings.SCHEDULER_OARClusterSettings.SCHEDULER_SLURMClusterSettings.SCHEDULE_COMMANDClusterSettings.STATUS_COMMANDClusterSettings.STOP_COMMAND
DBSettingsHPCSettingsHPCSettings.CAN_RUN_HPCHPCSettings.CRYPT_BUFFER_SIZEHPCSettings.CRYPT_PASS_SIZEHPCSettings.HPC_LAUNCHER_SH_SCRIPTHPCSettings.IN_OPERATION_EXECUTION_PROCESSHPCSettings.JOB_MOUNT_POINT_KEYHPCSettings.JOB_STATUS_KEYHPCSettings.UNICORE_ARGS_KEYHPCSettings.UNICORE_EXE_KEYHPCSettings.UNICORE_PROJECT_KEYHPCSettings.UNICORE_RESOURCER_KEY
VersionSettingsWebAdminSettingsWebSettings
storedutils
loggerPackageneotraitsPackage
datatypesPackageconnectivityConnectivityConnectivity.areasConnectivity.binarized_weightsConnectivity.centresConnectivity.centres_annular()Connectivity.centres_cubic()Connectivity.centres_spherical()Connectivity.centres_toroidal()Connectivity.compute_region_labels()Connectivity.compute_tract_lengths()Connectivity.configure()Connectivity.corticalConnectivity.create_region_labels()Connectivity.delaysConnectivity.from_bytes_stream()Connectivity.from_file()Connectivity.generate_surrogate_connectivity()Connectivity.get_default_selection()Connectivity.get_grouped_space_labels()Connectivity.hemisphere_order_indicesConnectivity.hemispheresConnectivity.horizonConnectivity.idelaysConnectivity.is_right_hemisphere()Connectivity.motif_all_to_all()Connectivity.motif_chain_directed()Connectivity.motif_chain_undirected()Connectivity.motif_linear_directed()Connectivity.motif_linear_undirected()Connectivity.number_of_connectionsConnectivity.number_of_regionsConnectivity.ordered_centresConnectivity.ordered_labelsConnectivity.ordered_tractsConnectivity.ordered_weightsConnectivity.orientationsConnectivity.parent_connectivityConnectivity.region_labelsConnectivity.saved_selectionConnectivity.saved_selection_labelsConnectivity.scaled_weights()Connectivity.set_areas()Connectivity.set_centres()Connectivity.set_cortical()Connectivity.set_hemispheres()Connectivity.set_idelays()Connectivity.set_orientations()Connectivity.set_region_labels()Connectivity.set_tract_lengths()Connectivity.set_weights()Connectivity.speedConnectivity.subcortical_indicesConnectivity.summary_info()Connectivity.tract_lengthsConnectivity.transform_binarize_matrix()Connectivity.transform_remove_self_connections()Connectivity.try_compute_hemispheres()Connectivity.undirectedConnectivity.unmapped_indices()Connectivity.weights
cortexCortexCortex.compute_local_connectivity()Cortex.configure()Cortex.coupling_strengthCortex.from_file()Cortex.local_connectivityCortex.number_of_trianglesCortex.number_of_verticesCortex.prepare_local_coupling()Cortex.region_mappingCortex.region_mapping_dataCortex.surfaceCortex.trianglesCortex.vertex_normalsCortex.vertices
equationsAbsoluteAlphaCosineDiscreteEquationDoubleExponentialDoubleGaussianEquationEquationsEnumFiniteSupportEquationFirstOrderVolterraGammaGaussianGeneralizedSigmoidHRFKernelEquationIdentityLinearLogarithmMixtureOfGammasPulseTrainRescaleIntervalSigmoidSinusoidSpatialApplicableEquationTemporalApplicableEquation
fcdgraphlocal_connectivitymode_decompositionsIndependentComponentsIndependentComponents.component_time_seriesIndependentComponents.compute_component_time_series()IndependentComponents.compute_mixing_matrix()IndependentComponents.compute_norm_source()IndependentComponents.compute_normalised_component_time_series()IndependentComponents.mixing_matrixIndependentComponents.n_componentsIndependentComponents.norm_sourceIndependentComponents.normalised_component_time_seriesIndependentComponents.prewhitening_matrixIndependentComponents.sourceIndependentComponents.summary_info()IndependentComponents.unmixing_matrix
PrincipalComponentsPrincipalComponents.component_time_seriesPrincipalComponents.compute_component_time_series()PrincipalComponents.compute_norm_source()PrincipalComponents.compute_normalised_component_time_series()PrincipalComponents.fractionsPrincipalComponents.norm_sourcePrincipalComponents.normalised_component_time_seriesPrincipalComponents.sourcePrincipalComponents.summary_info()PrincipalComponents.weights
patternsprojectionsregion_mappingsensorsspectralCoherenceSpectrumComplexCoherenceSpectrumComplexCoherenceSpectrum.array_dataComplexCoherenceSpectrum.cross_spectrumComplexCoherenceSpectrum.epoch_lengthComplexCoherenceSpectrum.freq_stepComplexCoherenceSpectrum.frequencyComplexCoherenceSpectrum.max_freqComplexCoherenceSpectrum.segment_lengthComplexCoherenceSpectrum.sourceComplexCoherenceSpectrum.spectrum_typesComplexCoherenceSpectrum.summary_info()ComplexCoherenceSpectrum.windowing_function
FourierSpectrumFourierSpectrum.amplitudeFourierSpectrum.array_dataFourierSpectrum.average_powerFourierSpectrum.compute_amplitude()FourierSpectrum.compute_average_power()FourierSpectrum.compute_normalised_average_power()FourierSpectrum.compute_phase()FourierSpectrum.compute_power()FourierSpectrum.configure()FourierSpectrum.freq_stepFourierSpectrum.frequencyFourierSpectrum.max_freqFourierSpectrum.normalised_average_powerFourierSpectrum.phaseFourierSpectrum.powerFourierSpectrum.segment_lengthFourierSpectrum.sourceFourierSpectrum.summary_info()FourierSpectrum.windowing_function
WaveletCoefficientsWaveletCoefficients.amplitudeWaveletCoefficients.array_dataWaveletCoefficients.compute_amplitude()WaveletCoefficients.compute_phase()WaveletCoefficients.compute_power()WaveletCoefficients.frequenciesWaveletCoefficients.frequencyWaveletCoefficients.motherWaveletCoefficients.normalisationWaveletCoefficients.phaseWaveletCoefficients.powerWaveletCoefficients.q_ratioWaveletCoefficients.sample_periodWaveletCoefficients.sourceWaveletCoefficients.summary_info()
WindowingFunctionsEnum
structuralsurfacesBrainSkullCorticalSurfaceEEGCapFaceSurfaceSkinAirSkullSkinSurfaceSurface.bi_hemisphericSurface.center()Surface.compute_equation()Surface.compute_geodesic_distance_matrix()Surface.compute_topological_constants()Surface.compute_triangle_normals()Surface.compute_vertex_normals()Surface.configure()Surface.edge_lengthsSurface.edge_max_lengthSurface.edge_mean_lengthSurface.edge_min_lengthSurface.edge_trianglesSurface.edgesSurface.from_bytes_stream()Surface.from_file()Surface.geodesic_distance()Surface.geodesic_distance_matrixSurface.hemisphere_maskSurface.laplace_beltrami()Surface.nth_ring()Surface.number_of_edgesSurface.number_of_trianglesSurface.number_of_verticesSurface.set_scaled_vertices()Surface.summary_info()Surface.surface_typeSurface.triangle_anglesSurface.triangle_areasSurface.triangle_centresSurface.triangle_normalsSurface.trianglesSurface.valid_for_simulationsSurface.validate()Surface.validate_topology_for_simulations()Surface.vertex_neighboursSurface.vertex_normalsSurface.vertex_trianglesSurface.verticesSurface.zero_based_triangles
SurfaceTypesEnumValidationResultWhiteMatterSurfacecenter_vertices()make_surface()
temporal_correlationstime_seriesSensorsTSBaseTimeSeriesTimeSeries.dataTimeSeries.duplicate()TimeSeries.from_bytes_stream()TimeSeries.get_state_variable()TimeSeries.get_subspace_by_index()TimeSeries.get_subspace_by_labels()TimeSeries.labels_dimensionsTimeSeries.labels_orderingTimeSeries.nr_dimensionsTimeSeries.sample_periodTimeSeries.sample_period_msTimeSeries.sample_period_unitTimeSeries.sample_rateTimeSeries.shapeTimeSeries.space_labelsTimeSeries.start_timeTimeSeries.summary_info()TimeSeries.timeTimeSeries.time_unitTimeSeries.titleTimeSeries.variables_labels
TimeSeriesEEGTimeSeriesMEGTimeSeriesRegionTimeSeriesSEEGTimeSeriesSurfaceTimeSeriesVolume
tractsvolumes
rateMLPackageXML2modelRateMLRateML.XSD_validate_XML()RateML.default_XML_folder()RateML.default_generation_folder()RateML.familiarize_TVB()RateML.init_statevariables()RateML.load_model()RateML.parse_args()RateML.pp_bound()RateML.pp_cplist()RateML.pp_noise()RateML.render()RateML.render_driver()RateML.render_model()RateML.set_XML_model_folder()RateML.set_driver_location()RateML.set_generated_model_location()RateML.set_template()RateML.swap_language_specific_terms()RateML.write_model_file()
tmpl8_cudatmpl8_drivertmpl8_python- Subpackages
generatedModelsPackageepileptorEpileptorTEpileptorT.IextEpileptorT.Iext2EpileptorT.KfEpileptorT.KsEpileptorT.KvfEpileptorT.aEpileptorT.aaEpileptorT.bEpileptorT.bbEpileptorT.cEpileptorT.cvarEpileptorT.dEpileptorT.dfun()EpileptorT.modificationEpileptorT.rEpileptorT.sEpileptorT.slopeEpileptorT.state_variable_rangeEpileptorT.state_variablesEpileptorT.tauEpileptorT.ttEpileptorT.variables_of_interestEpileptorT.x0
kuramotomontbriooscillatorOscillatorTOscillatorT.IOscillatorT.aOscillatorT.alphaOscillatorT.bOscillatorT.betaOscillatorT.cOscillatorT.cvarOscillatorT.dOscillatorT.dfun()OscillatorT.eOscillatorT.fOscillatorT.gOscillatorT.gammaOscillatorT.state_variable_boundariesOscillatorT.state_variable_rangeOscillatorT.state_variablesOscillatorT.tauOscillatorT.variables_of_interest
rwongwangRwongwangTRwongwangT.GRwongwangT.I_0RwongwangT.JIRwongwangT.J_IRwongwangT.J_NRwongwangT.J_NMDARwongwangT.a_ERwongwangT.a_IRwongwangT.b_ERwongwangT.b_IRwongwangT.cvarRwongwangT.d_ERwongwangT.d_IRwongwangT.dfun()RwongwangT.gamma_ERwongwangT.gamma_IRwongwangT.lamdaRwongwangT.state_variable_boundariesRwongwangT.state_variable_rangeRwongwangT.state_variablesRwongwangT.tau_ERwongwangT.tau_IRwongwangT.variables_of_interestRwongwangT.w_ERwongwangT.w_IRwongwangT.w_plus
- Subpackages
runPackagemodel_driverDriver_ExecuteDriver_Execute.cf()Driver_Execute.compare_with_ref()Driver_Execute.gpu_mem_info()Driver_Execute.make_gpu_data()Driver_Execute.make_kernel()Driver_Execute.nbytes()Driver_Execute.plot_output()Driver_Execute.release_gpumem()Driver_Execute.run_all()Driver_Execute.run_simulation()Driver_Execute.set_CUDA_ref_model_dir()Driver_Execute.set_CUDAmodel_dir()Driver_Execute.write_output()
Driver_Setup
model_driver_boldDriver_ExecuteDriver_Execute.cf()Driver_Execute.compare_with_ref()Driver_Execute.gpu_mem_info()Driver_Execute.make_gpu_data()Driver_Execute.make_kernel()Driver_Execute.nbytes()Driver_Execute.plot_output()Driver_Execute.release_gpumem()Driver_Execute.run_all()Driver_Execute.run_simulation()Driver_Execute.set_CUDA_ref_model_dir()Driver_Execute.set_CUDAmodel_dir()Driver_Execute.write_output()
Driver_Setup
model_driver_heunmodel_driver_zerlautDriver_ExecuteDriver_Execute.cf()Driver_Execute.compare_with_ref()Driver_Execute.gpu_mem_info()Driver_Execute.make_gpu_data()Driver_Execute.make_kernel()Driver_Execute.nbytes()Driver_Execute.plot_output()Driver_Execute.release_gpumem()Driver_Execute.run_all()Driver_Execute.run_simulation()Driver_Execute.set_CUDA_ref_model_dir()Driver_Execute.set_CUDAmodel_dir()Driver_Execute.write_output()
Driver_Setup
regular_run
simulatorPackageSimulatorSimulatorSimulator.TYPES_TO_DEEPCOPYSimulator.backendSimulator.callsSimulator.conduction_speedSimulator.configure()Simulator.configure_integration_for_model()Simulator.connectivitySimulator.couplingSimulator.current_stepSimulator.duplicate()Simulator.gidSimulator.good_history_shapeSimulator.historySimulator.initial_conditionsSimulator.integrate_next_stepSimulator.integratorSimulator.is_surface_simulationSimulator.memory_requirement()Simulator.modelSimulator.monitorsSimulator.number_of_nodesSimulator.preconfigure()Simulator.run()Simulator.runtime()Simulator.set_title()Simulator.simulation_lengthSimulator.stimulusSimulator.storage_requirement()Simulator.summary_info()Simulator.surfaceSimulator.tag()Simulator.tagsSimulator.validate()
CouplingmodelsPackageModelsEnumModelsEnum.BASE_MODELModelsEnum.COOMBES_BYRNEModelsEnum.COOMBES_BYRNE_2DModelsEnum.DECO_BALANCED_EXC_INHModelsEnum.DUMONT_GUTKINModelsEnum.EPILEPTORModelsEnum.EPILEPTOR_2DModelsEnum.EPILEPTOR_CODIM_3ModelsEnum.EPILEPTOR_CODIM_3_SLOWModelsEnum.EPILEPTOR_RSModelsEnum.GAST_SCHMIDT_KNOSCHE_SDModelsEnum.GAST_SCHMIDT_KNOSCHE_SFModelsEnum.GENERIC_2D_OSCILLATORModelsEnum.HOPFIELDModelsEnum.JANSEN_RITModelsEnum.KURAMOTOModelsEnum.K_ION_EXCHANGEModelsEnum.LARTER_BREAKSPEARModelsEnum.LINEARModelsEnum.MONTBRIO_PAZO_ROXINModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMOModelsEnum.REDUCED_SET_HINDMARSH_ROSEModelsEnum.REDUCED_WONG_WANGModelsEnum.REDUCED_WONG_WANG_EXC_INHModelsEnum.SUP_HOPFModelsEnum.WILSON_COWANModelsEnum.ZERLAUT_FIRST_ORDERModelsEnum.ZERLAUT_SECOND_ORDERModelsEnum.ZETTERBERG_JANSENModelsEnum.get_base_model_subclasses()ModelsEnum.get_class()
baseModelModel.configure()Model.cvarModel.dfun()Model.global_parameter_namesModel.has_nonint_varsModel.initial()Model.initial_for_simulator()Model.nintvarModel.nnonintvarModel.non_integrated_variablesModel.number_of_modesModel.nvarModel.spatial_param_reshapeModel.spatial_parameter_matrixModel.spatial_parameter_namesModel.state_variable_boundariesModel.state_variable_maskModel.state_variablesModel.stationary_trajectory()Model.stvarModel.update_derived_parameters()Model.update_state_variables_after_integration()Model.update_state_variables_before_integration()Model.variables_of_interest
ModelNumbaDfun
epileptorEpileptorEpileptor.IextEpileptor.Iext2Epileptor.KfEpileptor.KsEpileptor.KvfEpileptor.aEpileptor.aaEpileptor.bEpileptor.bbEpileptor.cEpileptor.cvarEpileptor.dEpileptor.dfun()Epileptor.modificationEpileptor.rEpileptor.sEpileptor.slopeEpileptor.state_variable_rangeEpileptor.state_variablesEpileptor.tauEpileptor.ttEpileptor.variables_of_interestEpileptor.x0
Epileptor2DEpileptor2D.IextEpileptor2D.KsEpileptor2D.KvfEpileptor2D.aEpileptor2D.bEpileptor2D.cEpileptor2D.cvarEpileptor2D.dEpileptor2D.dfun()Epileptor2D.modificationEpileptor2D.rEpileptor2D.slopeEpileptor2D.state_variable_rangeEpileptor2D.state_variablesEpileptor2D.ttEpileptor2D.variables_of_interestEpileptor2D.x0
hopfieldjansen_ritJansenRitJansenRit.AJansenRit.BJansenRit.JJansenRit.aJansenRit.a_1JansenRit.a_2JansenRit.a_3JansenRit.a_4JansenRit.bJansenRit.cvarJansenRit.dfun()JansenRit.muJansenRit.nu_maxJansenRit.p_maxJansenRit.p_minJansenRit.rJansenRit.state_variable_rangeJansenRit.state_variablesJansenRit.v0JansenRit.variables_of_interest
ZetterbergJansenZetterbergJansen.HeZetterbergJansen.HekeZetterbergJansen.HiZetterbergJansen.HikiZetterbergJansen.PZetterbergJansen.QZetterbergJansen.UZetterbergJansen.cvarZetterbergJansen.dfun()ZetterbergJansen.e0ZetterbergJansen.gamma_1ZetterbergJansen.gamma_1TZetterbergJansen.gamma_2ZetterbergJansen.gamma_2TZetterbergJansen.gamma_3ZetterbergJansen.gamma_3TZetterbergJansen.gamma_4ZetterbergJansen.gamma_5ZetterbergJansen.keZetterbergJansen.ke_2ZetterbergJansen.kekeZetterbergJansen.kiZetterbergJansen.ki_2ZetterbergJansen.kikiZetterbergJansen.rho_1ZetterbergJansen.rho_2ZetterbergJansen.sigma_fun()ZetterbergJansen.state_variable_rangeZetterbergJansen.state_variablesZetterbergJansen.update_derived_parameters()ZetterbergJansen.variables_of_interest
larter_breakspearLarterBreakspearLarterBreakspear.CLarterBreakspear.IextLarterBreakspear.QV_maxLarterBreakspear.QZ_maxLarterBreakspear.TCaLarterBreakspear.TKLarterBreakspear.TNaLarterBreakspear.VCaLarterBreakspear.VKLarterBreakspear.VLLarterBreakspear.VNaLarterBreakspear.VTLarterBreakspear.ZTLarterBreakspear.aeeLarterBreakspear.aeiLarterBreakspear.aieLarterBreakspear.aneLarterBreakspear.aniLarterBreakspear.bLarterBreakspear.cvarLarterBreakspear.d_CaLarterBreakspear.d_KLarterBreakspear.d_NaLarterBreakspear.d_VLarterBreakspear.d_ZLarterBreakspear.dfun()LarterBreakspear.gCaLarterBreakspear.gKLarterBreakspear.gLLarterBreakspear.gNaLarterBreakspear.phiLarterBreakspear.rNMDALarterBreakspear.state_variable_rangeLarterBreakspear.state_variablesLarterBreakspear.t_scaleLarterBreakspear.tau_KLarterBreakspear.variables_of_interest
linearoscillatorGeneric2dOscillatorGeneric2dOscillator.dfun()Generic2dOscillator.IGeneric2dOscillator.aGeneric2dOscillator.alphaGeneric2dOscillator.bGeneric2dOscillator.betaGeneric2dOscillator.cGeneric2dOscillator.cvarGeneric2dOscillator.dGeneric2dOscillator.dfun()Generic2dOscillator.eGeneric2dOscillator.fGeneric2dOscillator.gGeneric2dOscillator.gammaGeneric2dOscillator.state_variable_rangeGeneric2dOscillator.state_variablesGeneric2dOscillator.tauGeneric2dOscillator.variables_of_interest
KuramotoSupHopf
stefanescu_jirsaReducedSetBaseReducedSetFitzHughNagumoReducedSetFitzHughNagumo.update_derived_parameters()ReducedSetFitzHughNagumo.AikReducedSetFitzHughNagumo.BikReducedSetFitzHughNagumo.CikReducedSetFitzHughNagumo.IE_iReducedSetFitzHughNagumo.II_iReducedSetFitzHughNagumo.K11ReducedSetFitzHughNagumo.K12ReducedSetFitzHughNagumo.K21ReducedSetFitzHughNagumo.aReducedSetFitzHughNagumo.bReducedSetFitzHughNagumo.cvarReducedSetFitzHughNagumo.dfun()ReducedSetFitzHughNagumo.e_iReducedSetFitzHughNagumo.f_iReducedSetFitzHughNagumo.m_iReducedSetFitzHughNagumo.muReducedSetFitzHughNagumo.n_iReducedSetFitzHughNagumo.sigmaReducedSetFitzHughNagumo.state_variable_rangeReducedSetFitzHughNagumo.state_variablesReducedSetFitzHughNagumo.tauReducedSetFitzHughNagumo.update_derived_parameters()ReducedSetFitzHughNagumo.variables_of_interest
ReducedSetHindmarshRoseReducedSetHindmarshRose.update_derived_parameters()ReducedSetHindmarshRose.A_ikReducedSetHindmarshRose.B_ikReducedSetHindmarshRose.C_ikReducedSetHindmarshRose.IE_iReducedSetHindmarshRose.II_iReducedSetHindmarshRose.K11ReducedSetHindmarshRose.K12ReducedSetHindmarshRose.K21ReducedSetHindmarshRose.aReducedSetHindmarshRose.a_iReducedSetHindmarshRose.bReducedSetHindmarshRose.b_iReducedSetHindmarshRose.cReducedSetHindmarshRose.c_iReducedSetHindmarshRose.cvarReducedSetHindmarshRose.dReducedSetHindmarshRose.d_iReducedSetHindmarshRose.dfun()ReducedSetHindmarshRose.e_iReducedSetHindmarshRose.f_iReducedSetHindmarshRose.h_iReducedSetHindmarshRose.m_iReducedSetHindmarshRose.muReducedSetHindmarshRose.n_iReducedSetHindmarshRose.p_iReducedSetHindmarshRose.rReducedSetHindmarshRose.sReducedSetHindmarshRose.sigmaReducedSetHindmarshRose.state_variable_rangeReducedSetHindmarshRose.state_variablesReducedSetHindmarshRose.update_derived_parameters()ReducedSetHindmarshRose.variables_of_interestReducedSetHindmarshRose.xo
wilson_cowanWilsonCowanWilsonCowan.PWilsonCowan.QWilsonCowan.a_eWilsonCowan.a_iWilsonCowan.alpha_eWilsonCowan.alpha_iWilsonCowan.b_eWilsonCowan.b_iWilsonCowan.c_eWilsonCowan.c_eeWilsonCowan.c_eiWilsonCowan.c_iWilsonCowan.c_ieWilsonCowan.c_iiWilsonCowan.cvarWilsonCowan.dfun()WilsonCowan.k_eWilsonCowan.k_iWilsonCowan.r_eWilsonCowan.r_iWilsonCowan.shift_sigmoidWilsonCowan.state_variable_rangeWilsonCowan.state_variablesWilsonCowan.tau_eWilsonCowan.tau_iWilsonCowan.theta_eWilsonCowan.theta_iWilsonCowan.variables_of_interest
wong_wangReducedWongWangReducedWongWang.I_oReducedWongWang.J_NReducedWongWang.aReducedWongWang.bReducedWongWang.configure()ReducedWongWang.cvarReducedWongWang.dReducedWongWang.dfun()ReducedWongWang.gammaReducedWongWang.sigma_noiseReducedWongWang.state_variable_boundariesReducedWongWang.state_variable_rangeReducedWongWang.state_variablesReducedWongWang.tau_sReducedWongWang.variables_of_interestReducedWongWang.w
IntegratorsIntegratorIntegrator.dtIntegrator.bounded_state_variable_indicesIntegrator.state_variable_boundariesIntegrator.clamped_state_variable_indicesIntegrator.clamped_state_variable_valuesIntegrator.scheme()Integrator.set_random_state()Integrator.configure()Integrator.configure_boundaries()Integrator.reconfigure_boundaries_and_clamping_for_integration_state_variables()Integrator.bound_state()Integrator.bound_integration_state()Integrator.clamp_state()Integrator.clamp_integration_state()Integrator.bound_and_clamp()Integrator.integration_bound_and_clamp()Integrator.integrate_with_update()Integrator.integrate()
IntegratorStochasticHeunDeterministicHeunStochasticEulerDeterministicEulerStochasticRungeKutta4thOrderDeterministicIdentityIdentityStochasticSciPyODEBaseSciPyODESciPySDEVODEVODEStochasticDopri5Dopri5StochasticDop853Dop853Stochastic
NoiseMonitors- Suggested Coding Conventions.
historyBaseHistoryDenseHistorySparseHistorySparseHistory.const_indicesSparseHistory.n_nnzrSparseHistory.n_nnzwSparseHistory.nbytesSparseHistory.nnz_col_el_idxSparseHistory.nnz_idelaysSparseHistory.nnz_maskSparseHistory.nnz_row_el_idxSparseHistory.nnz_row_idxSparseHistory.nnz_weightsSparseHistory.query()SparseHistory.query_sparse()SparseHistory.time_stride
commondescriptors