entities
Package¶
exportable
¶
generic_attributes
¶
- class tvb.core.entities.generic_attributes.GenericAttributes[source]¶
Bases:
object
Model class to hold generic attributes that we want to keep on all H5 file that correspond to a datatype. It is used by the H5 File in order to populate the corresponding H5 attributes (meta-data).
- create_date = None¶
- fill_from(extra_attributes: GenericAttributes) None [source]¶
- invalid = False¶
- is_nan = False¶
- operation_tag = ''¶
- parent_burst = None¶
- state = ''¶
- subject = ''¶
- user_tag_1 = ''¶
- user_tag_2 = ''¶
- user_tag_3 = ''¶
- user_tag_4 = ''¶
- user_tag_5 = ''¶
- visible = True¶
load
¶
Higher level entity loading. .. moduleauthor:: Mihai Andrei <mihai.andrei@codemart.ro>
- tvb.core.entities.load.get_class_by_name("package.module.class")[source]¶
is equivalent to from package.module import class
- tvb.core.entities.load.get_filtered_datatypes(project_id, data_type_cls, filters=None, page_size=50)[source]¶
Return all dataTypes that match a given name and some filters. :param data_type_cls: either a fully qualified class name or a class object
Subpackages¶
file
Packagefiles_update_manager
FilesUpdateManager
FilesUpdateManager.DATA_TYPES_PAGE_SIZE
FilesUpdateManager.MESSAGE
FilesUpdateManager.PROJECTS_PAGE_SIZE
FilesUpdateManager.STATUS
FilesUpdateManager.UPDATE_SCRIPTS_SUFFIX
FilesUpdateManager.get_all_h5_paths()
FilesUpdateManager.get_file_data_version()
FilesUpdateManager.is_file_up_to_date()
FilesUpdateManager.run_all_updates()
FilesUpdateManager.upgrade_file()
- Subpackages
file_update_scripts
Packagesimulator
Packageburst_configuration_h5
datatype_measure_h5
simulation_history_h5
SimulationHistory
SimulationHistory.current_state
SimulationHistory.current_step
SimulationHistory.fill_into()
SimulationHistory.history
SimulationHistory.integrator_noise_rng_state_algo
SimulationHistory.integrator_noise_rng_state_cached_gauss
SimulationHistory.integrator_noise_rng_state_has_gauss
SimulationHistory.integrator_noise_rng_state_keys
SimulationHistory.integrator_noise_rng_state_pos
SimulationHistory.monitor_names
SimulationHistory.monitor_stock_1
SimulationHistory.monitor_stock_10
SimulationHistory.monitor_stock_11
SimulationHistory.monitor_stock_12
SimulationHistory.monitor_stock_13
SimulationHistory.monitor_stock_14
SimulationHistory.monitor_stock_15
SimulationHistory.monitor_stock_2
SimulationHistory.monitor_stock_3
SimulationHistory.monitor_stock_4
SimulationHistory.monitor_stock_5
SimulationHistory.monitor_stock_6
SimulationHistory.monitor_stock_7
SimulationHistory.monitor_stock_8
SimulationHistory.monitor_stock_9
SimulationHistory.populate_from()
SimulationHistoryH5
view_model
AdditiveNoiseViewModel
BoldRegionROIViewModel
BoldViewModel
CortexViewModel
Dop853StochasticViewModel
Dop853ViewModel
Dopri5StochasticViewModel
Dopri5ViewModel
EEGViewModel
EulerDeterministicViewModel
EulerStochasticViewModel
GlobalAverageViewModel
HeunDeterministicViewModel
HeunStochasticViewModel
IdentityViewModel
IntegratorStochasticViewModel
IntegratorViewModel
IntegratorViewModelsEnum
IntegratorViewModelsEnum.DIFFERENCE_EQUATION
IntegratorViewModelsEnum.DOPRI_5
IntegratorViewModelsEnum.DOPRI_5_STOCHASTIC
IntegratorViewModelsEnum.DOP_853
IntegratorViewModelsEnum.DOP_853_STOCHASTIC
IntegratorViewModelsEnum.EULER
IntegratorViewModelsEnum.EULER_MARUYAMA
IntegratorViewModelsEnum.HEUN
IntegratorViewModelsEnum.RUNGE_KUTTA
IntegratorViewModelsEnum.STOCHASTIC_HEUN
IntegratorViewModelsEnum.STOCHASTIC_VARIABLE_ODER_ADAMS
IntegratorViewModelsEnum.VARIABLE_ORDER_ADAMS
MEGViewModel
MonitorViewModel
MultiplicativeNoiseViewModel
NoiseViewModel
ProjectionViewModel
RawViewModel
RungeKutta4thOrderDeterministicViewModel
SimulatorAdapterModel
SimulatorAdapterModel.connectivity
SimulatorAdapterModel.determine_indexes_for_chosen_vars_of_interest()
SimulatorAdapterModel.first_monitor
SimulatorAdapterModel.get_variables_of_interest_indexes()
SimulatorAdapterModel.history_gid
SimulatorAdapterModel.integrator
SimulatorAdapterModel.linked_has_traits
SimulatorAdapterModel.monitors
SimulatorAdapterModel.stimulus
SimulatorAdapterModel.surface
SpatialAverageViewModel
SubSampleViewModel
TemporalAverageViewModel
VODEStochasticViewModel
VODEViewModel
iEEGViewModel
filters
Packagechain
FilterChain
FilterChain.add_condition()
FilterChain.algorithm
FilterChain.algorithm_category
FilterChain.algorithm_category_replacement
FilterChain.algorithm_replacement
FilterChain.datatype
FilterChain.datatype_replacement
FilterChain.from_json()
FilterChain.get_filters_for_type()
FilterChain.get_python_filter_equivalent()
FilterChain.get_sql_filter_equivalent()
FilterChain.operation
FilterChain.operation_replacement
FilterChain.to_json()
UIFilter
exceptions
factory
model
Packagemodel_burst
BurstConfiguration
BurstConfiguration.BURST_CANCELED
BurstConfiguration.BURST_ERROR
BurstConfiguration.BURST_FINISHED
BurstConfiguration.BURST_RUNNING
BurstConfiguration.clone()
BurstConfiguration.create_date
BurstConfiguration.datatypes_number
BurstConfiguration.dynamic_ids
BurstConfiguration.error_message
BurstConfiguration.finish_time
BurstConfiguration.fk_metric_operation_group
BurstConfiguration.fk_operation_group
BurstConfiguration.fk_project
BurstConfiguration.fk_simulation
BurstConfiguration.gid
BurstConfiguration.id
BurstConfiguration.is_finished
BurstConfiguration.is_group
BurstConfiguration.is_pse_burst()
BurstConfiguration.metric_operation_group
BurstConfiguration.name
BurstConfiguration.operation_group
BurstConfiguration.operation_info_for_burst_removal
BurstConfiguration.parent_burst_object
BurstConfiguration.process_time
BurstConfiguration.project
BurstConfiguration.range1
BurstConfiguration.range2
BurstConfiguration.ranges
BurstConfiguration.selected_tab
BurstConfiguration.simulator_gid
BurstConfiguration.start_time
BurstConfiguration.status
BurstConfiguration.title
BurstConfiguration.type_
Dynamic
model_datatype
DataType
DataType.accepted_filters()
DataType.after_store()
DataType.create_date
DataType.disk_size
DataType.display_name
DataType.display_type
DataType.fill_from_generic_attributes()
DataType.fill_from_h5()
DataType.fill_from_has_traits()
DataType.fixed_generic_attributes
DataType.fk_datatype_group
DataType.fk_from_operation
DataType.fk_parent_burst
DataType.get_extra_info()
DataType.gid
DataType.id
DataType.invalid
DataType.is_nan
DataType.is_ts
DataType.module
DataType.parent_operation
DataType.state
DataType.subject
DataType.summary_info
DataType.title
DataType.type
DataType.type_
DataType.user_tag_1
DataType.user_tag_2
DataType.user_tag_3
DataType.user_tag_4
DataType.user_tag_5
DataType.visible
DataTypeGroup
DataTypeGroup.count_results
DataTypeGroup.create_date
DataTypeGroup.disk_size
DataTypeGroup.fk_datatype_group
DataTypeGroup.fk_from_operation
DataTypeGroup.fk_operation_group
DataTypeGroup.fk_parent_burst
DataTypeGroup.gid
DataTypeGroup.id
DataTypeGroup.invalid
DataTypeGroup.is_data_a_group()
DataTypeGroup.is_nan
DataTypeGroup.module
DataTypeGroup.no_of_ranges
DataTypeGroup.parent_operation
DataTypeGroup.parent_operation_group
DataTypeGroup.state
DataTypeGroup.subject
DataTypeGroup.title
DataTypeGroup.type
DataTypeGroup.type_
DataTypeGroup.user_tag_1
DataTypeGroup.user_tag_2
DataTypeGroup.user_tag_3
DataTypeGroup.user_tag_4
DataTypeGroup.user_tag_5
DataTypeGroup.visible
DataTypeMatrix
DataTypeMatrix.array_data_max
DataTypeMatrix.array_data_mean
DataTypeMatrix.array_data_min
DataTypeMatrix.array_has_complex
DataTypeMatrix.array_is_finite
DataTypeMatrix.create_date
DataTypeMatrix.disk_size
DataTypeMatrix.fill_from_has_traits()
DataTypeMatrix.fk_datatype_group
DataTypeMatrix.fk_from_operation
DataTypeMatrix.fk_parent_burst
DataTypeMatrix.gid
DataTypeMatrix.has_valid_time_series
DataTypeMatrix.has_volume_mapping
DataTypeMatrix.id
DataTypeMatrix.invalid
DataTypeMatrix.is_nan
DataTypeMatrix.module
DataTypeMatrix.ndim
DataTypeMatrix.parent_operation
DataTypeMatrix.parsed_shape
DataTypeMatrix.shape
DataTypeMatrix.state
DataTypeMatrix.subject
DataTypeMatrix.subtype
DataTypeMatrix.title
DataTypeMatrix.type
DataTypeMatrix.type_
DataTypeMatrix.user_tag_1
DataTypeMatrix.user_tag_2
DataTypeMatrix.user_tag_3
DataTypeMatrix.user_tag_4
DataTypeMatrix.user_tag_5
DataTypeMatrix.visible
Links
MeasurePointsSelection
StoredPSEFilter
model_operation
Algorithm
Algorithm.algorithm_category
Algorithm.classname
Algorithm.datatype_filter
Algorithm.description
Algorithm.displayname
Algorithm.fk_category
Algorithm.group_description
Algorithm.group_name
Algorithm.id
Algorithm.last_introspection_check
Algorithm.module
Algorithm.outputlist
Algorithm.parameter_name
Algorithm.removed
Algorithm.required_datatype
Algorithm.subsection_name
AlgorithmCategory
AlgorithmTransientGroup
Operation
Operation.additional_info
Operation.algorithm
Operation.completion_date
Operation.create_date
Operation.estimated_disk_size
Operation.fk_from_algo
Operation.fk_launched_by
Operation.fk_launched_in
Operation.fk_operation_group
Operation.from_dict()
Operation.gid
Operation.has_finished
Operation.id
Operation.mark_complete()
Operation.operation_group
Operation.project
Operation.queue_full
Operation.range_values
Operation.start_date
Operation.start_now()
Operation.status
Operation.to_dict()
Operation.user
Operation.user_group
Operation.view_model_disk_size
Operation.view_model_gid
Operation.visible
OperationGroup
OperationProcessIdentifier
ResultFigure
has_finished()
model_project
Project
Project.administrator
Project.description
Project.disable_imports
Project.fk_admin
Project.from_dict()
Project.gid
Project.id
Project.last_updated
Project.max_operation_size
Project.members
Project.name
Project.operations_canceled
Project.operations_error
Project.operations_finished
Project.operations_pending
Project.operations_started
Project.refresh_update_date()
Project.to_dict()
Project.version
User
User.display_name
User.email
User.get_preference()
User.get_project_structure_grouping()
User.get_viewers_color_scheme()
User.gid
User.id
User.is_administrator()
User.is_online_help_active()
User.password
User.preferences
User.role
User.selected_project
User.set_preference()
User.set_project_structure_grouping()
User.set_viewers_color_scheme()
User.switch_online_help_state()
User.username
User.validated
UserPreferences
User_to_Project
storage
PackageDAO
burst_dao
datatype_dao
DatatypeDAO
DatatypeDAO.compute_bursts_disk_size()
DatatypeDAO.count_all_datatypes()
DatatypeDAO.count_datatypes()
DatatypeDAO.count_datatypes_in_burst()
DatatypeDAO.count_datatypes_in_group()
DatatypeDAO.get_all_datatypes()
DatatypeDAO.get_data_in_project()
DatatypeDAO.get_datatype_by_gid()
DatatypeDAO.get_datatype_details()
DatatypeDAO.get_datatype_extra_info()
DatatypeDAO.get_datatype_group_by_gid()
DatatypeDAO.get_datatype_group_disk_size()
DatatypeDAO.get_datatype_in_group()
DatatypeDAO.get_datatype_measure_group_from_ts_from_pse()
DatatypeDAO.get_datatypegroup_by_op_group_id()
DatatypeDAO.get_datatypegroup_for_project()
DatatypeDAO.get_datatypes_for_range()
DatatypeDAO.get_datatypes_from_datatype_group()
DatatypeDAO.get_datatypes_in_project()
DatatypeDAO.get_disk_size_for_operation()
DatatypeDAO.get_last_data_with_uid()
DatatypeDAO.get_linked_datatypes_in_project()
DatatypeDAO.get_links_for_datatype()
DatatypeDAO.get_number_of_bursts()
DatatypeDAO.get_selections_for_project()
DatatypeDAO.get_stored_pse_filters()
DatatypeDAO.get_summary_for_group()
DatatypeDAO.get_values_of_datatype()
DatatypeDAO.is_datatype_group()
DatatypeDAO.session
DatatypeDAO.set_datatype_visibility()
DatatypeDAO.try_load_last_entity_of_type()
exceptions
operation_dao
OperationDAO
OperationDAO.compute_disk_size_for_started_ops()
OperationDAO.count_resulted_datatypes()
OperationDAO.filter_category()
OperationDAO.get_adapters_from_categories()
OperationDAO.get_algorithm_by_id()
OperationDAO.get_algorithm_by_module()
OperationDAO.get_algorithm_categories()
OperationDAO.get_all_algorithms()
OperationDAO.get_all_operations_for_uploaders()
OperationDAO.get_applicable_adapters()
OperationDAO.get_category_by_id()
OperationDAO.get_figure_count()
OperationDAO.get_filtered_operations()
OperationDAO.get_launchable_categories()
OperationDAO.get_operation_by_gid()
OperationDAO.get_operation_by_id()
OperationDAO.get_operation_lazy_by_gid()
OperationDAO.get_operation_numbers()
OperationDAO.get_operation_process_for_operation()
OperationDAO.get_operationgroup_by_gid()
OperationDAO.get_operationgroup_by_id()
OperationDAO.get_operations()
OperationDAO.get_operations_for_hpc_job()
OperationDAO.get_operations_in_group()
OperationDAO.get_operations_with_error_in_project()
OperationDAO.get_previews()
OperationDAO.get_raw_categories()
OperationDAO.get_results_for_operation()
OperationDAO.get_uploader_categories()
OperationDAO.get_visualisers_categories()
OperationDAO.is_upload_operation()
OperationDAO.load_figure()
OperationDAO.session
OperationDAO.set_operation_and_group_visibility()
OperationDAO.try_get_operation_by_id()
project_dao
CaseDAO
CaseDAO.add_members_to_project()
CaseDAO.compute_user_generated_disk_size()
CaseDAO.count_projects_for_name()
CaseDAO.count_users_for_name()
CaseDAO.delete_members_for_project()
CaseDAO.delete_project()
CaseDAO.get_administrators()
CaseDAO.get_all_projects()
CaseDAO.get_all_users()
CaseDAO.get_link()
CaseDAO.get_linkable_projects_for_user()
CaseDAO.get_links_to_project()
CaseDAO.get_members_of_project()
CaseDAO.get_project_by_gid()
CaseDAO.get_project_by_id()
CaseDAO.get_project_by_name()
CaseDAO.get_project_disk_size()
CaseDAO.get_project_for_operation()
CaseDAO.get_project_lazy_by_gid()
CaseDAO.get_projects_for_user()
CaseDAO.get_system_user()
CaseDAO.get_user_by_email()
CaseDAO.get_user_by_gid()
CaseDAO.get_user_by_id()
CaseDAO.get_user_by_name()
CaseDAO.get_user_for_datatype()
CaseDAO.session
root_dao
session_maker
workflow_dao
transient
Packagecontext_overlay
CommonDetails
DataTypeOverlayDetails
DataTypeOverlayDetails.DATA_STATE
DataTypeOverlayDetails.DATA_SUBJECT
DataTypeOverlayDetails.DATA_TAG_1
DataTypeOverlayDetails.DATA_TAG_2
DataTypeOverlayDetails.DATA_TAG_3
DataTypeOverlayDetails.DATA_TAG_4
DataTypeOverlayDetails.DATA_TAG_5
DataTypeOverlayDetails.DATA_TITLE
DataTypeOverlayDetails.fill_from_datatype()
OperationOverlayDetails
range_parameter
structure_entities
DataTypeMetaData
DataTypeMetaData.DEFAULT_SUBJECT
DataTypeMetaData.KEY_AUTHOR
DataTypeMetaData.KEY_BURST
DataTypeMetaData.KEY_CLASS_NAME
DataTypeMetaData.KEY_COUNT
DataTypeMetaData.KEY_CREATE_DATA_DAY
DataTypeMetaData.KEY_CREATE_DATA_MONTH
DataTypeMetaData.KEY_DATATYPE_ID
DataTypeMetaData.KEY_DATE
DataTypeMetaData.KEY_FK_OPERATION_GROUP
DataTypeMetaData.KEY_GID
DataTypeMetaData.KEY_INVALID
DataTypeMetaData.KEY_LINK
DataTypeMetaData.KEY_MODULE
DataTypeMetaData.KEY_NODE_TYPE
DataTypeMetaData.KEY_OPERATION_ALGORITHM
DataTypeMetaData.KEY_OPERATION_GROUP_NAME
DataTypeMetaData.KEY_OPERATION_TAG
DataTypeMetaData.KEY_OPERATION_TYPE
DataTypeMetaData.KEY_OP_GROUP_ID
DataTypeMetaData.KEY_RELEVANCY
DataTypeMetaData.KEY_STATE
DataTypeMetaData.KEY_SUBJECT
DataTypeMetaData.KEY_TAG_1
DataTypeMetaData.KEY_TAG_2
DataTypeMetaData.KEY_TAG_3
DataTypeMetaData.KEY_TAG_4
DataTypeMetaData.KEY_TAG_5
DataTypeMetaData.KEY_TITLE
DataTypeMetaData.STATES
DataTypeMetaData.create_date
DataTypeMetaData.get_filterable_meta()
DataTypeMetaData.gid
DataTypeMetaData.group
DataTypeMetaData.mark_invalid()
DataTypeMetaData.merge_data()
DataTypeMetaData.subject
StructureNode
StructureNode.PREFIX_ID_LEAF
StructureNode.PREFIX_ID_NODE
StructureNode.PREFIX_ID_PROJECT
StructureNode.SEP
StructureNode.TYPE_FILE
StructureNode.TYPE_FOLDER
StructureNode.TYPE_INVALID
StructureNode.has_children
StructureNode.is_group
StructureNode.is_irelevant
StructureNode.is_link
StructureNode.metadata2tree()
StructureNode.type