entities Package¶
exportable¶
generic_attributes¶
- class tvb.core.entities.generic_attributes.GenericAttributes[source]¶
Bases:
objectModel class to hold generic attributes that we want to keep on all H5 file that correspond to a datatype. It is used by the H5 File in order to populate the corresponding H5 attributes (meta-data).
- create_date = None¶
- fill_from(extra_attributes: GenericAttributes) None[source]¶
- invalid = False¶
- is_nan = False¶
- operation_tag = ''¶
- parent_burst = None¶
- state = ''¶
- subject = ''¶
- user_tag_1 = ''¶
- user_tag_2 = ''¶
- user_tag_3 = ''¶
- user_tag_4 = ''¶
- user_tag_5 = ''¶
- visible = True¶
load¶
Higher level entity loading. .. moduleauthor:: Mihai Andrei <mihai.andrei@codemart.ro>
- tvb.core.entities.load.get_class_by_name("package.module.class")[source]¶
is equivalent to from package.module import class
- tvb.core.entities.load.get_filtered_datatypes(project_id, data_type_cls, filters=None, page_size=50)[source]¶
Return all dataTypes that match a given name and some filters. :param data_type_cls: either a fully qualified class name or a class object
Subpackages¶
filePackagefiles_update_managerFilesUpdateManagerFilesUpdateManager.DATA_TYPES_PAGE_SIZEFilesUpdateManager.MESSAGEFilesUpdateManager.PROJECTS_PAGE_SIZEFilesUpdateManager.STATUSFilesUpdateManager.UPDATE_SCRIPTS_SUFFIXFilesUpdateManager.get_all_h5_paths()FilesUpdateManager.get_file_data_version()FilesUpdateManager.is_file_up_to_date()FilesUpdateManager.run_all_updates()FilesUpdateManager.upgrade_file()
- Subpackages
file_update_scriptsPackagesimulatorPackageburst_configuration_h5datatype_measure_h5simulation_history_h5SimulationHistorySimulationHistory.current_stateSimulationHistory.current_stepSimulationHistory.fill_into()SimulationHistory.historySimulationHistory.integrator_noise_rng_state_algoSimulationHistory.integrator_noise_rng_state_cached_gaussSimulationHistory.integrator_noise_rng_state_has_gaussSimulationHistory.integrator_noise_rng_state_keysSimulationHistory.integrator_noise_rng_state_posSimulationHistory.monitor_namesSimulationHistory.monitor_stock_1SimulationHistory.monitor_stock_10SimulationHistory.monitor_stock_11SimulationHistory.monitor_stock_12SimulationHistory.monitor_stock_13SimulationHistory.monitor_stock_14SimulationHistory.monitor_stock_15SimulationHistory.monitor_stock_2SimulationHistory.monitor_stock_3SimulationHistory.monitor_stock_4SimulationHistory.monitor_stock_5SimulationHistory.monitor_stock_6SimulationHistory.monitor_stock_7SimulationHistory.monitor_stock_8SimulationHistory.monitor_stock_9SimulationHistory.populate_from()
SimulationHistoryH5
view_modelAdditiveNoiseViewModelBoldRegionROIViewModelBoldViewModelCortexViewModelDop853StochasticViewModelDop853ViewModelDopri5StochasticViewModelDopri5ViewModelEEGViewModelEulerDeterministicViewModelEulerStochasticViewModelGlobalAverageViewModelHeunDeterministicViewModelHeunStochasticViewModelIdentityViewModelIntegratorStochasticViewModelIntegratorViewModelIntegratorViewModelsEnumIntegratorViewModelsEnum.DIFFERENCE_EQUATIONIntegratorViewModelsEnum.DOPRI_5IntegratorViewModelsEnum.DOPRI_5_STOCHASTICIntegratorViewModelsEnum.DOP_853IntegratorViewModelsEnum.DOP_853_STOCHASTICIntegratorViewModelsEnum.EULERIntegratorViewModelsEnum.EULER_MARUYAMAIntegratorViewModelsEnum.HEUNIntegratorViewModelsEnum.RUNGE_KUTTAIntegratorViewModelsEnum.STOCHASTIC_HEUNIntegratorViewModelsEnum.STOCHASTIC_VARIABLE_ODER_ADAMSIntegratorViewModelsEnum.VARIABLE_ORDER_ADAMS
MEGViewModelMonitorViewModelMultiplicativeNoiseViewModelNoiseViewModelProjectionViewModelRawViewModelRungeKutta4thOrderDeterministicViewModelSimulatorAdapterModelSimulatorAdapterModel.connectivitySimulatorAdapterModel.determine_indexes_for_chosen_vars_of_interest()SimulatorAdapterModel.first_monitorSimulatorAdapterModel.get_variables_of_interest_indexes()SimulatorAdapterModel.history_gidSimulatorAdapterModel.integratorSimulatorAdapterModel.linked_has_traitsSimulatorAdapterModel.monitorsSimulatorAdapterModel.stimulusSimulatorAdapterModel.surface
SpatialAverageViewModelSubSampleViewModelTemporalAverageViewModelVODEStochasticViewModelVODEViewModeliEEGViewModel
filtersPackagechainFilterChainFilterChain.add_condition()FilterChain.algorithmFilterChain.algorithm_categoryFilterChain.algorithm_category_replacementFilterChain.algorithm_replacementFilterChain.datatypeFilterChain.datatype_replacementFilterChain.from_json()FilterChain.get_filters_for_type()FilterChain.get_python_filter_equivalent()FilterChain.get_sql_filter_equivalent()FilterChain.operationFilterChain.operation_replacementFilterChain.to_json()
UIFilter
exceptionsfactory
modelPackagemodel_burstBurstConfigurationBurstConfiguration.BURST_CANCELEDBurstConfiguration.BURST_ERRORBurstConfiguration.BURST_FINISHEDBurstConfiguration.BURST_RUNNINGBurstConfiguration.clone()BurstConfiguration.create_dateBurstConfiguration.datatypes_numberBurstConfiguration.dynamic_idsBurstConfiguration.error_messageBurstConfiguration.finish_timeBurstConfiguration.fk_metric_operation_groupBurstConfiguration.fk_operation_groupBurstConfiguration.fk_projectBurstConfiguration.fk_simulationBurstConfiguration.gidBurstConfiguration.idBurstConfiguration.is_finishedBurstConfiguration.is_groupBurstConfiguration.is_pse_burst()BurstConfiguration.metric_operation_groupBurstConfiguration.nameBurstConfiguration.operation_groupBurstConfiguration.operation_info_for_burst_removalBurstConfiguration.parent_burst_objectBurstConfiguration.process_timeBurstConfiguration.projectBurstConfiguration.range1BurstConfiguration.range2BurstConfiguration.rangesBurstConfiguration.selected_tabBurstConfiguration.simulator_gidBurstConfiguration.start_timeBurstConfiguration.statusBurstConfiguration.titleBurstConfiguration.type_
Dynamic
model_datatypeDataTypeDataType.accepted_filters()DataType.after_store()DataType.create_dateDataType.disk_sizeDataType.display_nameDataType.display_typeDataType.fill_from_generic_attributes()DataType.fill_from_h5()DataType.fill_from_has_traits()DataType.fixed_generic_attributesDataType.fk_datatype_groupDataType.fk_from_operationDataType.fk_parent_burstDataType.get_extra_info()DataType.gidDataType.idDataType.invalidDataType.is_nanDataType.is_tsDataType.moduleDataType.parent_operationDataType.stateDataType.subjectDataType.summary_infoDataType.titleDataType.typeDataType.type_DataType.user_tag_1DataType.user_tag_2DataType.user_tag_3DataType.user_tag_4DataType.user_tag_5DataType.visible
DataTypeGroupDataTypeGroup.count_resultsDataTypeGroup.create_dateDataTypeGroup.disk_sizeDataTypeGroup.fk_datatype_groupDataTypeGroup.fk_from_operationDataTypeGroup.fk_operation_groupDataTypeGroup.fk_parent_burstDataTypeGroup.gidDataTypeGroup.idDataTypeGroup.invalidDataTypeGroup.is_data_a_group()DataTypeGroup.is_nanDataTypeGroup.moduleDataTypeGroup.no_of_rangesDataTypeGroup.parent_operationDataTypeGroup.parent_operation_groupDataTypeGroup.stateDataTypeGroup.subjectDataTypeGroup.titleDataTypeGroup.typeDataTypeGroup.type_DataTypeGroup.user_tag_1DataTypeGroup.user_tag_2DataTypeGroup.user_tag_3DataTypeGroup.user_tag_4DataTypeGroup.user_tag_5DataTypeGroup.visible
DataTypeMatrixDataTypeMatrix.array_data_maxDataTypeMatrix.array_data_meanDataTypeMatrix.array_data_minDataTypeMatrix.array_has_complexDataTypeMatrix.array_is_finiteDataTypeMatrix.create_dateDataTypeMatrix.disk_sizeDataTypeMatrix.fill_from_has_traits()DataTypeMatrix.fk_datatype_groupDataTypeMatrix.fk_from_operationDataTypeMatrix.fk_parent_burstDataTypeMatrix.gidDataTypeMatrix.has_valid_time_seriesDataTypeMatrix.has_volume_mappingDataTypeMatrix.idDataTypeMatrix.invalidDataTypeMatrix.is_nanDataTypeMatrix.moduleDataTypeMatrix.ndimDataTypeMatrix.parent_operationDataTypeMatrix.parsed_shapeDataTypeMatrix.shapeDataTypeMatrix.stateDataTypeMatrix.subjectDataTypeMatrix.subtypeDataTypeMatrix.titleDataTypeMatrix.typeDataTypeMatrix.type_DataTypeMatrix.user_tag_1DataTypeMatrix.user_tag_2DataTypeMatrix.user_tag_3DataTypeMatrix.user_tag_4DataTypeMatrix.user_tag_5DataTypeMatrix.visible
LinksMeasurePointsSelectionStoredPSEFilter
model_operationAlgorithmAlgorithm.algorithm_categoryAlgorithm.classnameAlgorithm.datatype_filterAlgorithm.descriptionAlgorithm.displaynameAlgorithm.fk_categoryAlgorithm.group_descriptionAlgorithm.group_nameAlgorithm.idAlgorithm.last_introspection_checkAlgorithm.moduleAlgorithm.outputlistAlgorithm.parameter_nameAlgorithm.removedAlgorithm.required_datatypeAlgorithm.subsection_name
AlgorithmCategoryAlgorithmTransientGroupOperationOperation.additional_infoOperation.algorithmOperation.completion_dateOperation.create_dateOperation.estimated_disk_sizeOperation.fk_from_algoOperation.fk_launched_byOperation.fk_launched_inOperation.fk_operation_groupOperation.from_dict()Operation.gidOperation.has_finishedOperation.idOperation.mark_complete()Operation.operation_groupOperation.projectOperation.queue_fullOperation.range_valuesOperation.start_dateOperation.start_now()Operation.statusOperation.to_dict()Operation.userOperation.user_groupOperation.view_model_disk_sizeOperation.view_model_gidOperation.visible
OperationGroupOperationProcessIdentifierResultFigurehas_finished()
model_projectProjectProject.administratorProject.descriptionProject.disable_importsProject.fk_adminProject.from_dict()Project.gidProject.idProject.last_updatedProject.max_operation_sizeProject.membersProject.nameProject.operations_canceledProject.operations_errorProject.operations_finishedProject.operations_pendingProject.operations_startedProject.refresh_update_date()Project.to_dict()Project.version
UserUser.display_nameUser.emailUser.get_preference()User.get_project_structure_grouping()User.get_viewers_color_scheme()User.gidUser.idUser.is_administrator()User.is_online_help_active()User.passwordUser.preferencesUser.roleUser.selected_projectUser.set_preference()User.set_project_structure_grouping()User.set_viewers_color_scheme()User.switch_online_help_state()User.usernameUser.validated
UserPreferencesUser_to_Project
storagePackageDAOburst_daodatatype_daoDatatypeDAODatatypeDAO.compute_bursts_disk_size()DatatypeDAO.count_all_datatypes()DatatypeDAO.count_datatypes()DatatypeDAO.count_datatypes_in_burst()DatatypeDAO.count_datatypes_in_group()DatatypeDAO.get_all_datatypes()DatatypeDAO.get_data_in_project()DatatypeDAO.get_datatype_by_gid()DatatypeDAO.get_datatype_details()DatatypeDAO.get_datatype_extra_info()DatatypeDAO.get_datatype_group_by_gid()DatatypeDAO.get_datatype_group_disk_size()DatatypeDAO.get_datatype_in_group()DatatypeDAO.get_datatype_measure_group_from_ts_from_pse()DatatypeDAO.get_datatypegroup_by_op_group_id()DatatypeDAO.get_datatypegroup_for_project()DatatypeDAO.get_datatypes_for_range()DatatypeDAO.get_datatypes_from_datatype_group()DatatypeDAO.get_datatypes_in_project()DatatypeDAO.get_disk_size_for_operation()DatatypeDAO.get_last_data_with_uid()DatatypeDAO.get_linked_datatypes_in_project()DatatypeDAO.get_links_for_datatype()DatatypeDAO.get_number_of_bursts()DatatypeDAO.get_selections_for_project()DatatypeDAO.get_stored_pse_filters()DatatypeDAO.get_summary_for_group()DatatypeDAO.get_values_of_datatype()DatatypeDAO.is_datatype_group()DatatypeDAO.sessionDatatypeDAO.set_datatype_visibility()DatatypeDAO.try_load_last_entity_of_type()
exceptionsoperation_daoOperationDAOOperationDAO.compute_disk_size_for_started_ops()OperationDAO.count_resulted_datatypes()OperationDAO.filter_category()OperationDAO.get_adapters_from_categories()OperationDAO.get_algorithm_by_id()OperationDAO.get_algorithm_by_module()OperationDAO.get_algorithm_categories()OperationDAO.get_all_algorithms()OperationDAO.get_all_operations_for_uploaders()OperationDAO.get_applicable_adapters()OperationDAO.get_category_by_id()OperationDAO.get_figure_count()OperationDAO.get_filtered_operations()OperationDAO.get_launchable_categories()OperationDAO.get_operation_by_gid()OperationDAO.get_operation_by_id()OperationDAO.get_operation_lazy_by_gid()OperationDAO.get_operation_numbers()OperationDAO.get_operation_process_for_operation()OperationDAO.get_operationgroup_by_gid()OperationDAO.get_operationgroup_by_id()OperationDAO.get_operations()OperationDAO.get_operations_for_hpc_job()OperationDAO.get_operations_in_group()OperationDAO.get_operations_with_error_in_project()OperationDAO.get_previews()OperationDAO.get_raw_categories()OperationDAO.get_results_for_operation()OperationDAO.get_uploader_categories()OperationDAO.get_visualisers_categories()OperationDAO.is_upload_operation()OperationDAO.load_figure()OperationDAO.sessionOperationDAO.set_operation_and_group_visibility()OperationDAO.try_get_operation_by_id()
project_daoCaseDAOCaseDAO.add_members_to_project()CaseDAO.compute_user_generated_disk_size()CaseDAO.count_projects_for_name()CaseDAO.count_users_for_name()CaseDAO.delete_members_for_project()CaseDAO.delete_project()CaseDAO.get_administrators()CaseDAO.get_all_projects()CaseDAO.get_all_users()CaseDAO.get_link()CaseDAO.get_linkable_projects_for_user()CaseDAO.get_links_to_project()CaseDAO.get_members_of_project()CaseDAO.get_project_by_gid()CaseDAO.get_project_by_id()CaseDAO.get_project_by_name()CaseDAO.get_project_disk_size()CaseDAO.get_project_for_operation()CaseDAO.get_project_lazy_by_gid()CaseDAO.get_projects_for_user()CaseDAO.get_system_user()CaseDAO.get_user_by_email()CaseDAO.get_user_by_gid()CaseDAO.get_user_by_id()CaseDAO.get_user_by_name()CaseDAO.get_user_for_datatype()CaseDAO.session
root_daosession_makerworkflow_dao
transientPackagecontext_overlayCommonDetailsDataTypeOverlayDetailsDataTypeOverlayDetails.DATA_STATEDataTypeOverlayDetails.DATA_SUBJECTDataTypeOverlayDetails.DATA_TAG_1DataTypeOverlayDetails.DATA_TAG_2DataTypeOverlayDetails.DATA_TAG_3DataTypeOverlayDetails.DATA_TAG_4DataTypeOverlayDetails.DATA_TAG_5DataTypeOverlayDetails.DATA_TITLEDataTypeOverlayDetails.fill_from_datatype()
OperationOverlayDetails
range_parameterstructure_entitiesDataTypeMetaDataDataTypeMetaData.DEFAULT_SUBJECTDataTypeMetaData.KEY_AUTHORDataTypeMetaData.KEY_BURSTDataTypeMetaData.KEY_CLASS_NAMEDataTypeMetaData.KEY_COUNTDataTypeMetaData.KEY_CREATE_DATA_DAYDataTypeMetaData.KEY_CREATE_DATA_MONTHDataTypeMetaData.KEY_DATATYPE_IDDataTypeMetaData.KEY_DATEDataTypeMetaData.KEY_FK_OPERATION_GROUPDataTypeMetaData.KEY_GIDDataTypeMetaData.KEY_INVALIDDataTypeMetaData.KEY_LINKDataTypeMetaData.KEY_MODULEDataTypeMetaData.KEY_NODE_TYPEDataTypeMetaData.KEY_OPERATION_ALGORITHMDataTypeMetaData.KEY_OPERATION_GROUP_NAMEDataTypeMetaData.KEY_OPERATION_TAGDataTypeMetaData.KEY_OPERATION_TYPEDataTypeMetaData.KEY_OP_GROUP_IDDataTypeMetaData.KEY_RELEVANCYDataTypeMetaData.KEY_STATEDataTypeMetaData.KEY_SUBJECTDataTypeMetaData.KEY_TAG_1DataTypeMetaData.KEY_TAG_2DataTypeMetaData.KEY_TAG_3DataTypeMetaData.KEY_TAG_4DataTypeMetaData.KEY_TAG_5DataTypeMetaData.KEY_TITLEDataTypeMetaData.STATESDataTypeMetaData.create_dateDataTypeMetaData.get_filterable_meta()DataTypeMetaData.gidDataTypeMetaData.groupDataTypeMetaData.mark_invalid()DataTypeMetaData.merge_data()DataTypeMetaData.subject
StructureNodeStructureNode.PREFIX_ID_LEAFStructureNode.PREFIX_ID_NODEStructureNode.PREFIX_ID_PROJECTStructureNode.SEPStructureNode.TYPE_FILEStructureNode.TYPE_FOLDERStructureNode.TYPE_INVALIDStructureNode.has_childrenStructureNode.is_groupStructureNode.is_irelevantStructureNode.is_linkStructureNode.metadata2tree()StructureNode.type