interfaces Package¶
This package contains a web client interface for TVB.
Subpackages¶
commandPackagerestPackage- Subpackages
bids_monitorPackagebids_data_builderBIDSDataBuilderBIDSDataBuilder.create_archive()BIDSDataBuilder.create_dataset_json_files()BIDSDataBuilder.create_dataset_subjects()BIDSDataBuilder.files_build_data_check()BIDSDataBuilder.get_abs_path()BIDSDataBuilder.get_complete_paths()BIDSDataBuilder.get_connected_dependencies_paths()BIDSDataBuilder.get_data_files()BIDSDataBuilder.init_paths()BIDSDataBuilder.subject_build_data_check()
bids_dir_monitorlaunch_bids_monitor- Subpackages
testsPackagebids_monitor_testTestBIDSDataBuilderTestBIDSDataBuilder.TS_JSON_TO_COPYTestBIDSDataBuilder.TS_TO_COPYTestBIDSDataBuilder.extract_data()TestBIDSDataBuilder.extract_file_names()TestBIDSDataBuilder.get_storage_path()TestBIDSDataBuilder.pytestmarkTestBIDSDataBuilder.setup()TestBIDSDataBuilder.teardown_method()TestBIDSDataBuilder.test_create_bids_dataset()TestBIDSDataBuilder.test_monitor_bids_dataset()
clientPackageclient_decoratorsmain_apitvb_clientTVBClientTVBClient.add_members_to_project()TVBClient.browser_login()TVBClient.create_project()TVBClient.fire_simulation()TVBClient.get_data_in_project()TVBClient.get_extra_info()TVBClient.get_operation_results()TVBClient.get_operation_status()TVBClient.get_operations_for_datatype()TVBClient.get_operations_in_project()TVBClient.get_project_list()TVBClient.get_users()TVBClient.launch_operation()TVBClient.load_datatype_from_file()TVBClient.load_datatype_with_full_references()TVBClient.load_datatype_with_links()TVBClient.logout()TVBClient.open_browser()TVBClient.quick_launch_operation()TVBClient.retrieve_datatype()TVBClient.update_auth_token()
- Subpackages
commonsPackagedecodersdtosexceptionsfiles_helperstatus_codesstringsFormKeyInputLinkPlaceholderRequestFileKeyRestLinkRestLink.DATATYPE_EXTRA_INFORestLink.DATATYPE_OPERATIONSRestLink.DATA_IN_PROJECTRestLink.FIRE_SIMULATIONRestLink.GET_DATATYPERestLink.IS_DATA_ENCRYPTEDRestLink.LAUNCH_OPERATIONRestLink.LOGINRestLink.OPERATIONS_IN_PROJECTRestLink.OPERATION_RESULTSRestLink.OPERATION_STATUSRestLink.PROJECTSRestLink.PROJECT_MEMBERSRestLink.USEFUL_URLSRestLink.compute_url()
RestNamespaceStrings
serverPackage
- Subpackages
webPackageoperations_assignerrequest_handlerrunrun_landing_pagestructureWebStructureWebStructure.ANALYZERS_ONLINE_HELP_SHORTCUTSWebStructure.SECTION_ANALYZEWebStructure.SECTION_BURSTWebStructure.SECTION_CONNECTIVITYWebStructure.SECTION_PROJECTWebStructure.SECTION_STIMULUSWebStructure.SECTION_USERWebStructure.SUB_SECTION_ACCOUNTWebStructure.SUB_SECTION_ALLENWebStructure.SUB_SECTION_ANALYZE_1WebStructure.SUB_SECTION_ANALYZE_10WebStructure.SUB_SECTION_ANALYZE_11WebStructure.SUB_SECTION_ANALYZE_12WebStructure.SUB_SECTION_ANALYZE_13WebStructure.SUB_SECTION_ANALYZE_14WebStructure.SUB_SECTION_ANALYZE_15WebStructure.SUB_SECTION_ANALYZE_16WebStructure.SUB_SECTION_ANALYZE_17WebStructure.SUB_SECTION_ANALYZE_18WebStructure.SUB_SECTION_ANALYZE_2WebStructure.SUB_SECTION_ANALYZE_3WebStructure.SUB_SECTION_ANALYZE_4WebStructure.SUB_SECTION_ANALYZE_5WebStructure.SUB_SECTION_ANALYZE_6WebStructure.SUB_SECTION_ANALYZE_7WebStructure.SUB_SECTION_ANALYZE_8WebStructure.SUB_SECTION_ANALYZE_9WebStructure.SUB_SECTION_ANALYZE_MENUWebStructure.SUB_SECTION_BURSTWebStructure.SUB_SECTION_CONNECTIVITYWebStructure.SUB_SECTION_CONNECTIVITY_MENUWebStructure.SUB_SECTION_DATA_STRUCTUREWebStructure.SUB_SECTION_FIGURESWebStructure.SUB_SECTION_LIST_PROJECTSWebStructure.SUB_SECTION_LOCAL_CONNECTIVITYWebStructure.SUB_SECTION_LOGINWebStructure.SUB_SECTION_MODEL_REGIONSWebStructure.SUB_SECTION_MODEL_SURFACEWebStructure.SUB_SECTION_NOISE_CONFIGURATIONWebStructure.SUB_SECTION_OPERATIONSWebStructure.SUB_SECTION_PHASE_PLANEWebStructure.SUB_SECTION_PROJECT_MENUWebStructure.SUB_SECTION_PROPERTIES_PROJECTWebStructure.SUB_SECTION_SIIBRAWebStructure.SUB_SECTION_STIMULUS_MENUWebStructure.SUB_SECTION_STIMULUS_REGIONWebStructure.SUB_SECTION_STIMULUS_SURFACEWebStructure.SUB_SECTION_VIEW_0WebStructure.SUB_SECTION_VIEW_1WebStructure.SUB_SECTION_VIEW_10WebStructure.SUB_SECTION_VIEW_11WebStructure.SUB_SECTION_VIEW_12WebStructure.SUB_SECTION_VIEW_13WebStructure.SUB_SECTION_VIEW_14WebStructure.SUB_SECTION_VIEW_15WebStructure.SUB_SECTION_VIEW_16WebStructure.SUB_SECTION_VIEW_17WebStructure.SUB_SECTION_VIEW_18WebStructure.SUB_SECTION_VIEW_19WebStructure.SUB_SECTION_VIEW_2WebStructure.SUB_SECTION_VIEW_20WebStructure.SUB_SECTION_VIEW_21WebStructure.SUB_SECTION_VIEW_22WebStructure.SUB_SECTION_VIEW_23WebStructure.SUB_SECTION_VIEW_24WebStructure.SUB_SECTION_VIEW_25WebStructure.SUB_SECTION_VIEW_3WebStructure.SUB_SECTION_VIEW_4WebStructure.SUB_SECTION_VIEW_5WebStructure.SUB_SECTION_VIEW_6WebStructure.SUB_SECTION_VIEW_7WebStructure.SUB_SECTION_VIEW_8WebStructure.SUB_SECTION_VIEW_9WebStructure.VISUALIZERS_ONLINE_HELP_SHORTCUTSWebStructure.WEB_SECTION_TITLESWebStructure.WEB_SUBSECTION_TITLES
- Subpackages
controllersPackageautologgingbase_controllerBaseControllerBaseController.MAX_SIZE_ERROR_MSGBaseController.build_path()BaseController.error()BaseController.fill_default_attributes()BaseController.fill_overlay_attributes()BaseController.get_url_adapter()BaseController.index()BaseController.mark_file_for_delete()BaseController.redirect()BaseController.render_adapter_form()BaseController.showBlockerOverlay()BaseController.tvb()BaseController.update_operations_count()
commonInvalidFormValuesMissingDataExceptionNotAllowedNotAuthenticatedadd2session()expire_session()get_current_project()get_from_session()get_logged_user()get_message_from_session()has_error_message()pop_message_from_session()remove_from_session()remove_project_from_session()set_error_message()set_important_message()set_info_message()set_message()set_warning_message()
decoratorsflow_controllerFlowControllerFlowController.NEW_SELECTION_NAMEFlowController.cancel_or_remove_operation()FlowController.create_row_of_specs()FlowController.default()FlowController.execute_post()FlowController.fill_default_attributes()FlowController.get_adapter_template()FlowController.get_available_selections()FlowController.get_filtered_datatypes()FlowController.get_pse_filters()FlowController.get_simple_adapter_interface()FlowController.get_template_for_adapter()FlowController.getadapterinterface()FlowController.invoke_adapter()FlowController.prepare_group_launch()FlowController.read_binary_datatype_attribute()FlowController.read_datatype_attribute()FlowController.read_from_h5_file()FlowController.readserverstaticfile()FlowController.refresh_subform()FlowController.reload_burst_operation()FlowController.reloadoperation()FlowController.show_group_of_algorithms()FlowController.step_analyzers()FlowController.step_connectivity()FlowController.store_exploration_section()FlowController.store_measure_points_selection()FlowController.store_pse_filter()
hpc_controllerkube_controllersettings_controllerusers_controllerEditUserFormKeycloakLoginFormLoginFormRecoveryFormRegisterFormUniqueUsernameUserControllerUserController.base_url()UserController.check_sso()UserController.create_new()UserController.fill_default_attributes()UserController.get_color_schemes_json()UserController.get_viewer_color_scheme()UserController.index()UserController.is_storage_ready()UserController.keycloak_web_config()UserController.logout()UserController.profile()UserController.recoverpassword()UserController.register()UserController.set_viewer_color_scheme()UserController.switch_online_help()UserController.usermanagement()UserController.validate()
- Subpackages
burstPackagebase_controllerdynamic_model_controllerDynamicDynamicModelControllerDynamicModelController.KEY_CACHED_DYNAMIC_MODELDynamicModelController.LOGGERDynamicModelController.dynamic_detail()DynamicModelController.fill_default_attributes()DynamicModelController.get_cached_dynamic()DynamicModelController.graph_changed()DynamicModelController.index()DynamicModelController.integrator_parameters_changed()DynamicModelController.model_changed()DynamicModelController.parameters_changed()DynamicModelController.refresh_subform()DynamicModelController.submit()DynamicModelController.trajectories()
SessionCache
exploration_controllerParameterExplorationControllerParameterExplorationController.draw_discrete_exploration()ParameterExplorationController.draw_isocline_exploration()ParameterExplorationController.get_default_pse_viewer()ParameterExplorationController.get_metric_matrix()ParameterExplorationController.get_node_matrix()ParameterExplorationController.get_series_array_discrete()ParameterExplorationController.pse_error()
matjaxnoise_configuration_controllerregion_model_parameters_controllertransfer_vector_controllerTransferVectorControllerTransferVectorController.apply_transfer_function()TransferVectorController.base_urlTransferVectorController.clear_histogram()TransferVectorController.fill_default_attributes()TransferVectorController.get_equation_chart()TransferVectorController.index()TransferVectorController.no_connectivity_measure_page()TransferVectorController.set_connectivity_measure()TransferVectorController.set_model_parameter()TransferVectorController.set_transfer_function_param()TransferVectorController.submit_model_parameter()TransferVectorController.title
helpPackageprojectPackagefigure_controllerproject_controllerEditFormProjectControllerProjectController.KEY_OPERATION_FILTERSProjectController.NODE_OPERATION_GROUP_TYPEProjectController.NODE_OPERATION_TYPEProjectController.PRROJECTS_FOR_LINK_KEYProjectController.PRROJECTS_LINKED_KEYProjectController.createlink()ProjectController.downloaddatatype()ProjectController.downloadproject()ProjectController.editone()ProjectController.editstructure()ProjectController.fill_default_attributes()ProjectController.generate_call_out_control()ProjectController.get_data_uploader_overlay()ProjectController.get_datatype_details()ProjectController.get_linkable_projects()ProjectController.get_operation_details()ProjectController.get_project_structure_grouping()ProjectController.get_project_uploader_overlay()ProjectController.getmemberspage()ProjectController.index()ProjectController.launchloader()ProjectController.noderemove()ProjectController.projectupload()ProjectController.readjsonstructure()ProjectController.removelink()ProjectController.set_project_structure_grouping()ProjectController.set_visibility()ProjectController.show_confirmation_overlay()ProjectController.updatemetadata()ProjectController.viewall()ProjectController.viewoperations()
simulatorPackagemonitors_wizard_handlerMonitorsWizardHandlerMonitorsWizardHandler.get_current_and_next_monitor_form()MonitorsWizardHandler.get_fragment_after_monitors()MonitorsWizardHandler.handle_next_fragment_for_monitors()MonitorsWizardHandler.prepare_monitor_fragment()MonitorsWizardHandler.prepare_monitor_legend()MonitorsWizardHandler.prepare_next_fragment_after_noise()MonitorsWizardHandler.set_monitors_list_on_simulator()MonitorsWizardHandler.update_monitor()
simulator_controllerSimulatorControllerSimulatorController.BRANCH_NAME_FORMATSimulatorController.COPY_NAME_FORMATSimulatorController.KEY_IS_LOAD_AFTER_REDIRECTSimulatorController.KEY_KEEP_SAME_SIM_WIZARDSimulatorController.branch_simulator_configuration()SimulatorController.build_monitor_url()SimulatorController.cancel_or_remove_burst()SimulatorController.cancel_or_remove_operation()SimulatorController.copy_simulator_configuration()SimulatorController.export()SimulatorController.get_first_monitor_fragment_url()SimulatorController.get_history_status()SimulatorController.get_last_fragment_url()SimulatorController.get_upload_overlay()SimulatorController.get_url_after_monitor_equation()SimulatorController.get_url_after_monitors()SimulatorController.get_url_for_final_fragment()SimulatorController.get_urls_for_next_monitor_fragment()SimulatorController.index()SimulatorController.launch_pse()SimulatorController.launch_simulation()SimulatorController.load_burst_history()SimulatorController.load_burst_read_only()SimulatorController.load_simulator_configuration_from_zip()SimulatorController.prepare_first_fragment()SimulatorController.rename_burst()SimulatorController.reset_simulator_configuration()SimulatorController.set_connectivity()SimulatorController.set_cortex()SimulatorController.set_coupling_params()SimulatorController.set_fragment_url()SimulatorController.set_integrator()SimulatorController.set_integrator_params()SimulatorController.set_model()SimulatorController.set_model_params()SimulatorController.set_monitor_equation()SimulatorController.set_monitor_params()SimulatorController.set_monitors()SimulatorController.set_noise_equation_params()SimulatorController.set_noise_params()SimulatorController.set_pse_params()SimulatorController.set_stimulus()SimulatorController.set_surface()SimulatorController.setup_pse()
simulator_fragment_rendering_rulesSimulatorFragmentRenderingRulesSimulatorFragmentRenderingRules.FIRST_FORM_URLSimulatorFragmentRenderingRules.disable_fieldsSimulatorFragmentRenderingRules.hide_launch_and_setup_pse_buttonSimulatorFragmentRenderingRules.hide_previous_buttonSimulatorFragmentRenderingRules.include_branch_buttonSimulatorFragmentRenderingRules.include_launch_buttonSimulatorFragmentRenderingRules.include_launch_pse_buttonSimulatorFragmentRenderingRules.include_next_buttonSimulatorFragmentRenderingRules.include_previous_buttonSimulatorFragmentRenderingRules.include_setup_noiseSimulatorFragmentRenderingRules.include_setup_pseSimulatorFragmentRenderingRules.include_setup_region_modelSimulatorFragmentRenderingRules.include_setup_surface_modelSimulatorFragmentRenderingRules.load_readonlySimulatorFragmentRenderingRules.to_dict()
simulator_wizzard_urlsSimulatorWizzardURLsSimulatorWizzardURLs.LAUNCH_PSE_URLSimulatorWizzardURLs.SETUP_PSE_URLSimulatorWizzardURLs.SET_CONNECTIVITY_URLSimulatorWizzardURLs.SET_CORTEX_URLSimulatorWizzardURLs.SET_COUPLING_PARAMS_URLSimulatorWizzardURLs.SET_INTEGRATOR_PARAMS_URLSimulatorWizzardURLs.SET_INTEGRATOR_URLSimulatorWizzardURLs.SET_MODEL_PARAMS_URLSimulatorWizzardURLs.SET_MODEL_URLSimulatorWizzardURLs.SET_MONITORS_URLSimulatorWizzardURLs.SET_MONITOR_EQUATION_URLSimulatorWizzardURLs.SET_MONITOR_PARAMS_URLSimulatorWizzardURLs.SET_NOISE_EQUATION_PARAMS_URLSimulatorWizzardURLs.SET_NOISE_PARAMS_URLSimulatorWizzardURLs.SET_PSE_PARAMS_URLSimulatorWizzardURLs.SET_STIMULUS_URLSimulatorWizzardURLs.SET_SURFACE_URL
spatialPackagebase_spatio_temporal_controllerSpatioTemporalControllerSpatioTemporalController.MSG_MISSING_SURFACESpatioTemporalController.display_surface()SpatioTemporalController.fill_default_attributes()SpatioTemporalController.get_series_json()SpatioTemporalController.get_ui_message()SpatioTemporalController.get_x_axis_range()SpatioTemporalController.index()SpatioTemporalController.render_spatial_form()
local_connectivity_controllerLocalConnectivityControllerLocalConnectivityController.CUTOFF_FIELDLocalConnectivityController.DISPLAY_NAME_FIELDLocalConnectivityController.EQUATION_FIELDLocalConnectivityController.EQUATION_PARAMS_FIELDLocalConnectivityController.SURFACE_FIELDLocalConnectivityController.base_urlLocalConnectivityController.compute_data_for_gradient_view()LocalConnectivityController.create_local_connectivity()LocalConnectivityController.fill_default_attributes()LocalConnectivityController.get_equation_chart()LocalConnectivityController.get_series_json()LocalConnectivityController.load_local_connectivity()LocalConnectivityController.reset_local_connectivity()LocalConnectivityController.set_cutoff_value()LocalConnectivityController.set_display_name()LocalConnectivityController.set_equation_param()LocalConnectivityController.set_surface()LocalConnectivityController.step_1()LocalConnectivityController.step_2()
region_stimulus_controllerRegionStimulusControllerRegionStimulusController.CONNECTIVITY_FIELDRegionStimulusController.DISPLAY_NAME_FIELDRegionStimulusController.MSG_MISSING_CONNECTIVITYRegionStimulusController.TEMPORAL_FIELDRegionStimulusController.TEMPORAL_PARAMS_FIELDRegionStimulusController.base_urlRegionStimulusController.create_stimulus()RegionStimulusController.display_connectivity()RegionStimulusController.do_step()RegionStimulusController.fill_default_attributes()RegionStimulusController.get_equation_chart()RegionStimulusController.load_region_stimulus()RegionStimulusController.reset_region_stimulus()RegionStimulusController.set_connectivity()RegionStimulusController.set_display_name()RegionStimulusController.set_temporal_param()RegionStimulusController.step_1()RegionStimulusController.step_1_submit()RegionStimulusController.step_2()RegionStimulusController.step_2_submit()RegionStimulusController.update_scaling()
surface_model_parameters_controllerSurfaceModelParametersControllerSurfaceModelParametersController.EQUATION_FIELDSurfaceModelParametersController.EQUATION_PARAMS_FIELDSurfaceModelParametersController.MODEL_PARAM_FIELDSurfaceModelParametersController.apply_equation()SurfaceModelParametersController.apply_focal_point()SurfaceModelParametersController.base_urlSurfaceModelParametersController.edit_model_parameters()SurfaceModelParametersController.fill_default_attributes()SurfaceModelParametersController.get_data_from_burst_configuration()SurfaceModelParametersController.get_equation_chart()SurfaceModelParametersController.get_focal_points()SurfaceModelParametersController.remove_focal_point()SurfaceModelParametersController.set_equation_param()SurfaceModelParametersController.set_model_parameter()SurfaceModelParametersController.submit_model_parameters()
surface_stimulus_controllerSurfaceStimulusControllerSurfaceStimulusController.DISPLAY_NAME_FIELDSurfaceStimulusController.SPATIAL_FIELDSurfaceStimulusController.SPATIAL_PARAMS_FIELDSurfaceStimulusController.SURFACE_FIELDSurfaceStimulusController.TEMPORAL_FIELDSurfaceStimulusController.TEMPORAL_PARAMS_FIELDSurfaceStimulusController.base_urlSurfaceStimulusController.create_stimulus()SurfaceStimulusController.do_step()SurfaceStimulusController.fill_default_attributes()SurfaceStimulusController.get_spatial_equation_chart()SurfaceStimulusController.get_stimulus_chunk()SurfaceStimulusController.get_temporal_equation_chart()SurfaceStimulusController.load_surface_stimulus()SurfaceStimulusController.reload_default()SurfaceStimulusController.set_display_name()SurfaceStimulusController.set_spatial_param()SurfaceStimulusController.set_surface()SurfaceStimulusController.set_temporal_param()SurfaceStimulusController.step_1()SurfaceStimulusController.step_1_submit()SurfaceStimulusController.step_2()SurfaceStimulusController.step_2_submit()SurfaceStimulusController.view_stimulus()
entitiesPackagecontext_model_parametersSurfaceContextModelParametersSurfaceContextModelParameters.apply_equation()SurfaceContextModelParameters.apply_focal_point()SurfaceContextModelParameters.get_configure_info()SurfaceContextModelParameters.get_data_for_model_param()SurfaceContextModelParameters.get_equation_for_parameter()SurfaceContextModelParameters.get_equation_information()SurfaceContextModelParameters.get_focal_points_for_parameter()SurfaceContextModelParameters.remove_focal_point()SurfaceContextModelParameters.reset_equations_for_all_parameters()SurfaceContextModelParameters.reset_param_equation()
context_overlaycontext_selected_adaptercontext_simulatorSimulatorContextSimulatorContext.KEY_BURST_CONFIGSimulatorContext.KEY_IS_SIMULATOR_BRANCHSimulatorContext.KEY_IS_SIMULATOR_COPYSimulatorContext.KEY_IS_SIMULATOR_LOADSimulatorContext.KEY_LAST_LOADED_FORM_URLSimulatorContext.KEY_SIMULATOR_CONFIGSimulatorContext.add_branch_and_copy_to_session()SimulatorContext.add_last_loaded_form_url_to_session()SimulatorContext.add_simulator_load_to_session()SimulatorContext.burst_configSimulatorContext.clean_project_data_from_session()SimulatorContext.get_common_params()SimulatorContext.init_session_at_burst_loading()SimulatorContext.init_session_at_copy_preparation()SimulatorContext.init_session_at_sim_config_from_zip()SimulatorContext.init_session_at_sim_reset()SimulatorContext.last_loaded_fragment_urlSimulatorContext.logged_userSimulatorContext.projectSimulatorContext.remove_burst_config_from_session()SimulatorContext.set_burst_config()SimulatorContext.set_simulator()SimulatorContext.set_warning_message()SimulatorContext.simulator
context_transfer_vector