h5 Package

decorators

tvb.storage.h5.decorators.synchronized(lock)

Synchronization annotation. We try to mimic the same behavior as Java has with keyword synchronized, for methods.

utils

tvb.storage.h5.utils.date2string(date_input, complex_format=True, date_format=None)

Convert date into string, after internal format

tvb.storage.h5.utils.string2bool(string_input)

Convert given string into boolean value.

tvb.storage.h5.utils.string2date(string_input, complex_format=True, date_format=None)

Read date from string, after internal format

Subpackages

• encryption Package
  • data_encryption_handler
    • DataEncryptionHandler
      • DataEncryptionHandler.APP_ENCRYPTION_HANDLER
      • DataEncryptionHandler.CRYPTO_PASS
      • DataEncryptionHandler.ENCRYPTED_FOLDER_SUFFIX
      • DataEncryptionHandler.KEYS_FOLDER
      • DataEncryptionHandler.app_encryption_handler()
      • DataEncryptionHandler.check_and_delete()
      • DataEncryptionHandler.compute_encrypted_folder_path()
      • DataEncryptionHandler.dec_queue_count()
      • DataEncryptionHandler.dec_running_op_count()
      • DataEncryptionHandler.encryption_enabled()
      • DataEncryptionHandler.file_helper
      • DataEncryptionHandler.inc_project_usage_count()
      • DataEncryptionHandler.inc_running_op_count()
      • DataEncryptionHandler.is_in_usage()
      • DataEncryptionHandler.linked_projects
      • DataEncryptionHandler.lock
      • DataEncryptionHandler.marked_for_delete
      • DataEncryptionHandler.project_key_path()
      • DataEncryptionHandler.push_folder_to_sync()
      • DataEncryptionHandler.queue_elements_count
      • DataEncryptionHandler.running_operations
      • DataEncryptionHandler.set_project_active()
      • DataEncryptionHandler.set_project_inactive()
      • DataEncryptionHandler.startup_cleanup()
      • DataEncryptionHandler.sync_folders()
      • DataEncryptionHandler.sync_project_queue
      • DataEncryptionHandler.users_project_usage
    • DataEncryptionHandlerBuilder
      • DataEncryptionHandlerBuilder.build_handler()
    • DataEncryptionHandlerMeta
    • DataEncryptionRemoteHandler
      • DataEncryptionRemoteHandler.check_and_delete()
      • DataEncryptionRemoteHandler.dec_queue_count()
      • DataEncryptionRemoteHandler.dec_running_op_count()
      • DataEncryptionRemoteHandler.inc_project_usage_count()
      • DataEncryptionRemoteHandler.inc_running_op_count()
      • DataEncryptionRemoteHandler.is_in_usage()
      • DataEncryptionRemoteHandler.lock
      • DataEncryptionRemoteHandler.push_folder_to_sync()
      • DataEncryptionRemoteHandler.set_project_active()
      • DataEncryptionRemoteHandler.set_project_inactive()
      • DataEncryptionRemoteHandler.startup_cleanup()
      • DataEncryptionRemoteHandler.sync_folders()
    • FoldersQueueConsumer
      • FoldersQueueConsumer.mark_stop()
      • FoldersQueueConsumer.marked_stop
      • FoldersQueueConsumer.run()
      • FoldersQueueConsumer.was_processing
    • InvalidStorageEncryptionException
  • encryption_handler
    • EncryptionHandler
      • EncryptionHandler.cleanup_encryption_handler()
      • EncryptionHandler.decrypt_files_to_dir()
      • EncryptionHandler.decrypt_results_to_dir()
      • EncryptionHandler.encrypt_inputs()
      • EncryptionHandler.encrypted_dir_name_regex
      • EncryptionHandler.encrypted_suffix
      • EncryptionHandler.generate_random_password()
      • EncryptionHandler.get_encrypted_dir()
      • EncryptionHandler.get_password_file()
  • import_export_encryption_handler
    • ImportExportEncryptionHandler
      • ImportExportEncryptionHandler.DECRYPTED_DATA_SUFFIX
      • ImportExportEncryptionHandler.ENCRYPTED_DATA_SUFFIX
      • ImportExportEncryptionHandler.ENCRYPTED_PASSWORD_NAME
      • ImportExportEncryptionHandler.PRIVATE_KEY_NAME
      • ImportExportEncryptionHandler.PUBLIC_KEY_NAME
      • ImportExportEncryptionHandler.add_encrypted_suffix()
      • ImportExportEncryptionHandler.decrypt_content()
      • ImportExportEncryptionHandler.encrypt_and_save_password()
      • ImportExportEncryptionHandler.encrypt_data_at_export()
      • ImportExportEncryptionHandler.encrypt_password()
      • ImportExportEncryptionHandler.extract_encrypted_password_from_list()
      • ImportExportEncryptionHandler.generate_public_private_key_pair()
      • ImportExportEncryptionHandler.get_path_to_encrypt()
      • ImportExportEncryptionHandler.load_public_key()
      • ImportExportEncryptionHandler.save_encrypted_password()
• file Package
  • exceptions
    • FileMigrationException
    • FileStorageException
    • FileStructureException
    • FileVersioningException
    • IncompatibleFileManagerException
    • MissingDataFileException
    • MissingDataSetException
    • RenameWhileSyncEncryptingException
    • UnsupportedFileStorageException
  • files_helper
    • FilesHelper
      • FilesHelper.ALLEN_MOUSE_CONNECTIVITY_CACHE_FOLDER
      • FilesHelper.PROJECTS_FOLDER
      • FilesHelper.check_created()
      • FilesHelper.compute_recursive_h5_disk_usage()
      • FilesHelper.compute_size_on_disk()
      • FilesHelper.copy_file()
      • FilesHelper.get_allen_mouse_cache_folder()
      • FilesHelper.get_images_folder()
      • FilesHelper.get_project_folder()
      • FilesHelper.get_project_folder_from_h5()
      • FilesHelper.get_project_meta_file_path()
      • FilesHelper.get_projects_folder()
      • FilesHelper.move_datatype()
      • FilesHelper.read_project_metadata()
      • FilesHelper.remove_figure()
      • FilesHelper.remove_files()
      • FilesHelper.remove_folder()
      • FilesHelper.remove_operation_data()
      • FilesHelper.rename_project_structure()
      • FilesHelper.write_image_metadata()
      • FilesHelper.write_project_metadata()
      • FilesHelper.write_project_metadata_from_dict()
    • TvbZip
      • TvbZip.unpack_zip()
      • TvbZip.write_zip_folder()
      • TvbZip.write_zip_folders()
  • hdf5_storage_manager
    • HDF5StorageManager
      • HDF5StorageManager.BOOL_VALUE_PREFIX
      • HDF5StorageManager.DATETIME_VALUE_PREFIX
      • HDF5StorageManager.DATE_TIME_FORMAT
      • HDF5StorageManager.H5pyStorageBuffer
        • HDF5StorageManager.H5pyStorageBuffer.buffer_data()
        • HDF5StorageManager.H5pyStorageBuffer.flush_buffered_data()
      • HDF5StorageManager.LOCKS
      • HDF5StorageManager.ROOT_NODE_PATH
      • HDF5StorageManager.TVB_ATTRIBUTE_PREFIX
      • HDF5StorageManager.append_data()
      • HDF5StorageManager.close_file()
      • HDF5StorageManager.get_data()
      • HDF5StorageManager.get_data_shape()
      • HDF5StorageManager.get_file_data_version()
      • HDF5StorageManager.get_metadata()
      • HDF5StorageManager.is_valid_tvb_file()
      • HDF5StorageManager.remove_data()
      • HDF5StorageManager.remove_metadata()
      • HDF5StorageManager.serialize_bool()
      • HDF5StorageManager.set_metadata()
      • HDF5StorageManager.store_data()
  • xml_metadata_handlers
    • XMLReader
      • XMLReader.get_node_text()
      • XMLReader.read_metadata_from_xml()
    • XMLWriter
      • XMLWriter.ELEM_ROOT
      • XMLWriter.FILE_EXTENSION
      • XMLWriter.write_metadata_in_xml()