The Virtual Brain Project

Python Module Index

_ | a | b | c | d | i | s
 
_
tvb.__init__
 
a
tvb.adapters
    tvb.adapters.analyzers
    tvb.adapters.analyzers.bct_adapters
    tvb.adapters.analyzers.bct_centrality_adapters
    tvb.adapters.analyzers.bct_clustering_adapters
    tvb.adapters.analyzers.bct_degree_adapters
    tvb.adapters.analyzers.cross_correlation_adapter
    tvb.adapters.analyzers.fcd_adapter
    tvb.adapters.analyzers.fmri_balloon_adapter
    tvb.adapters.analyzers.fourier_adapter
    tvb.adapters.analyzers.ica_adapter
    tvb.adapters.analyzers.matlab_worker
    tvb.adapters.analyzers.metrics_group_timeseries
    tvb.adapters.analyzers.node_coherence_adapter
    tvb.adapters.analyzers.node_complex_coherence_adapter
    tvb.adapters.analyzers.node_covariance_adapter
    tvb.adapters.analyzers.pca_adapter
    tvb.adapters.analyzers.wavelet_adapter
    tvb.adapters.creators
    tvb.adapters.creators.allen_creator
    tvb.adapters.creators.connectivity_creator
    tvb.adapters.creators.local_connectivity_creator
    tvb.adapters.creators.stimulus_creator
    tvb.adapters.exporters.abcexporter
    tvb.adapters.exporters.exceptions
    tvb.adapters.exporters.export_manager
    tvb.adapters.exporters.obj_export
    tvb.adapters.exporters.tvb_export
    tvb.adapters.simulator
    tvb.adapters.simulator.simulator_adapter
    tvb.adapters.uploaders
    tvb.adapters.uploaders.abcuploader
    tvb.adapters.uploaders.brco.parser
    tvb.adapters.uploaders.brco_importer
    tvb.adapters.uploaders.cff_importer
    tvb.adapters.uploaders.connectivity_measure_importer
    tvb.adapters.uploaders.csv_connectivity_importer
    tvb.adapters.uploaders.fieldtrip_importer
    tvb.adapters.uploaders.gifti.parser
    tvb.adapters.uploaders.gifti_surface_importer
    tvb.adapters.uploaders.gifti_timeseries_importer
    tvb.adapters.uploaders.mat.parser
    tvb.adapters.uploaders.mat_timeseries_importer
    tvb.adapters.uploaders.networkx_connectivity.parser
    tvb.adapters.uploaders.networkx_importer
    tvb.adapters.uploaders.nifti.parser
    tvb.adapters.uploaders.nifti_importer
    tvb.adapters.uploaders.obj.parser
    tvb.adapters.uploaders.obj.surface
    tvb.adapters.uploaders.obj_importer
    tvb.adapters.uploaders.projection_matrix_importer
    tvb.adapters.uploaders.region_mapping_importer
    tvb.adapters.uploaders.sensors_importer
    tvb.adapters.uploaders.signals_importer
    tvb.adapters.uploaders.tract_importer
    tvb.adapters.uploaders.tvb_importer
    tvb.adapters.uploaders.zip_connectivity_importer
    tvb.adapters.uploaders.zip_surface.parser
    tvb.adapters.uploaders.zip_surface_importer
    tvb.adapters.visualizers
    tvb.adapters.visualizers.annotations_viewer
    tvb.adapters.visualizers.brain
    tvb.adapters.visualizers.complex_imaginary_coherence
    tvb.adapters.visualizers.connectivity
    tvb.adapters.visualizers.connectivity_edge_bundle
    tvb.adapters.visualizers.covariance
    tvb.adapters.visualizers.cross_coherence
    tvb.adapters.visualizers.cross_correlation
    tvb.adapters.visualizers.eeg_monitor
    tvb.adapters.visualizers.fourier_spectrum
    tvb.adapters.visualizers.histogram
    tvb.adapters.visualizers.ica
    tvb.adapters.visualizers.local_connectivity_view
    tvb.adapters.visualizers.matrix_viewer
    tvb.adapters.visualizers.pca
    tvb.adapters.visualizers.pearson_cross_correlation
    tvb.adapters.visualizers.pearson_edge_bundle
    tvb.adapters.visualizers.phase_plane_interactive
    tvb.adapters.visualizers.pse_discrete
    tvb.adapters.visualizers.pse_isocline
    tvb.adapters.visualizers.region_volume_mapping
    tvb.adapters.visualizers.sensors
    tvb.adapters.visualizers.surface_view
    tvb.adapters.visualizers.time_series
    tvb.adapters.visualizers.time_series_volume
    tvb.adapters.visualizers.topographic
    tvb.adapters.visualizers.tract
    tvb.adapters.visualizers.wavelet_spectrogram
tvb.analyzers
    tvb.analyzers.correlation_coefficient
    tvb.analyzers.cross_correlation
    tvb.analyzers.fcd_matrix
    tvb.analyzers.fft
    tvb.analyzers.fmri_balloon
    tvb.analyzers.graph
    tvb.analyzers.ica
    tvb.analyzers.info
    tvb.analyzers.metric_kuramoto_index
    tvb.analyzers.metric_proxy_metastability
    tvb.analyzers.metric_variance_global
    tvb.analyzers.metric_variance_of_node_variance
    tvb.analyzers.metrics_base
    tvb.analyzers.node_coherence
    tvb.analyzers.node_complex_coherence
    tvb.analyzers.node_covariance
    tvb.analyzers.pca
    tvb.analyzers.wavelet
 
b
tvb.basic
    tvb.basic.arguments_serialisation
    tvb.basic.config.environment
    tvb.basic.config.profile_settings
    tvb.basic.config.settings
    tvb.basic.config.stored
    tvb.basic.config.utils
    tvb.basic.filters.chain
    tvb.basic.filters.exceptions
    tvb.basic.logger.builder
    tvb.basic.logger.simple_handler
    tvb.basic.profile
    tvb.basic.readers
    tvb.basic.traits
    tvb.basic.traits.core
    tvb.basic.traits.exceptions
    tvb.basic.traits.itree_model
    tvb.basic.traits.parameters_factory
    tvb.basic.traits.traited_interface
    tvb.basic.traits.traited_interface2
    tvb.basic.traits.types_basic
    tvb.basic.traits.types_mapped
    tvb.basic.traits.types_mapped_light
    tvb.basic.traits.util
 
c
tvb.config
    tvb.config.logger.cluster_handler
    tvb.config.profile_settings
tvb.core
    tvb.core.adapters.abcadapter
    tvb.core.adapters.abcdisplayer
    tvb.core.adapters.abcremover
    tvb.core.adapters.constants
    tvb.core.adapters.exceptions
    tvb.core.adapters.input_tree
    tvb.core.adapters.input_tree2
    tvb.core.adapters.introspector
    tvb.core.code_versions
    tvb.core.code_versions.base_classes
    tvb.core.code_versions.code_update_manager
    tvb.core.code_versions.code_update_scripts
    tvb.core.code_versions.code_update_scripts.4455_update_code
    tvb.core.code_versions.code_update_scripts.4750_update_code
    tvb.core.code_versions.code_update_scripts.5454_update_code
    tvb.core.code_versions.code_update_scripts.6093_update_code
    tvb.core.code_versions.code_update_scripts.6600_update_code
    tvb.core.code_versions.code_update_scripts.6728_update_code
    tvb.core.code_versions.code_update_scripts.7350_update_code
    tvb.core.code_versions.code_update_scripts.7450_update_code
    tvb.core.decorators
    tvb.core.entities.exportable
    tvb.core.entities.file.exceptions
    tvb.core.entities.file.file_update_scripts
    tvb.core.entities.file.file_update_scripts.002_update_files
    tvb.core.entities.file.file_update_scripts.003_update_files
    tvb.core.entities.file.file_update_scripts.004_update_files
    tvb.core.entities.file.files_helper
    tvb.core.entities.file.files_update_manager
    tvb.core.entities.file.hdf5_storage_manager
    tvb.core.entities.file.xml_metadata_handlers
    tvb.core.entities.load
    tvb.core.entities.model
    tvb.core.entities.model.db_update_scripts
    tvb.core.entities.model.db_update_scripts.001_update_db
    tvb.core.entities.model.db_update_scripts.002_update_db
    tvb.core.entities.model.db_update_scripts.003_update_db
    tvb.core.entities.model.db_update_scripts.004_update_db
    tvb.core.entities.model.db_update_scripts.005_update_db
    tvb.core.entities.model.db_update_scripts.006_update_db
    tvb.core.entities.model.db_update_scripts.007_update_db
    tvb.core.entities.model.db_update_scripts.008_update_db
    tvb.core.entities.model.db_update_scripts.009_update_db
    tvb.core.entities.model.db_update_scripts.010_update_db
    tvb.core.entities.model.db_update_scripts.011_update_db
    tvb.core.entities.model.db_update_scripts.012_update_db
    tvb.core.entities.model.db_update_scripts.013_update_db
    tvb.core.entities.model.db_update_scripts.014_update_db
    tvb.core.entities.model.db_update_scripts.015_update_db
    tvb.core.entities.model.db_update_scripts.016_update_db
    tvb.core.entities.model.db_update_scripts.017_update_db
    tvb.core.entities.model.db_update_scripts.helper
    tvb.core.entities.model.model_base
    tvb.core.entities.model.model_burst
    tvb.core.entities.model.model_datatype
    tvb.core.entities.model.model_operation
    tvb.core.entities.model.model_project
    tvb.core.entities.model.model_workflow
    tvb.core.entities.model_manager
    tvb.core.entities.storage
    tvb.core.entities.storage.datatype_dao
    tvb.core.entities.storage.exceptions
    tvb.core.entities.storage.operation_dao
    tvb.core.entities.storage.project_dao
    tvb.core.entities.storage.root_dao
    tvb.core.entities.storage.session_maker
    tvb.core.entities.storage.workflow_dao
    tvb.core.entities.transient
    tvb.core.entities.transient.burst_configuration_entities
    tvb.core.entities.transient.burst_export_entities
    tvb.core.entities.transient.context_local_connectivity
    tvb.core.entities.transient.context_overlay
    tvb.core.entities.transient.context_stimulus
    tvb.core.entities.transient.filtering
    tvb.core.entities.transient.graph_structures
    tvb.core.entities.transient.pse
    tvb.core.entities.transient.structure_entities
    tvb.core.model_validations
    tvb.core.operation_async_launcher
    tvb.core.portlets.portlet_configurer
    tvb.core.portlets.xml_reader
    tvb.core.project_versions
    tvb.core.project_versions.project_update_manager
    tvb.core.project_versions.project_update_scripts
    tvb.core.project_versions.project_update_scripts.1_update_project
    tvb.core.project_versions.project_update_scripts.2_update_project
    tvb.core.removers_factory
    tvb.core.services
    tvb.core.services.backend_client
    tvb.core.services.burst_config_serialization
    tvb.core.services.burst_service
    tvb.core.services.email_sender
    tvb.core.services.exceptions
    tvb.core.services.figure_service
    tvb.core.services.flow_service
    tvb.core.services.import_service
    tvb.core.services.initializer
    tvb.core.services.operation_service
    tvb.core.services.project_service
    tvb.core.services.settings_service
    tvb.core.services.texture_to_json
    tvb.core.services.user_service
    tvb.core.services.workflow_service
    tvb.core.traits.core
    tvb.core.traits.db_events
    tvb.core.traits.sql_mapping
    tvb.core.traits.types_mapped
    tvb.core.utils
 
d
tvb.datatype_removers
    tvb.datatype_removers.remover_connectivity
    tvb.datatype_removers.remover_region_mapping
    tvb.datatype_removers.remover_sensor
    tvb.datatype_removers.remover_surface
    tvb.datatype_removers.remover_timeseries
    tvb.datatype_removers.remover_volume
tvb.datatypes
    tvb.datatypes.annotations
    tvb.datatypes.arrays
    tvb.datatypes.connectivity
    tvb.datatypes.cortex
    tvb.datatypes.equations
    tvb.datatypes.fcd
    tvb.datatypes.graph
    tvb.datatypes.local_connectivity
    tvb.datatypes.lookup_tables
    tvb.datatypes.mapped_values
    tvb.datatypes.mode_decompositions
    tvb.datatypes.noise_framework
    tvb.datatypes.patterns
    tvb.datatypes.projections
    tvb.datatypes.region_mapping
    tvb.datatypes.sensors
    tvb.datatypes.sensors_bst_to_tvb
    tvb.datatypes.simulation_state
    tvb.datatypes.spectral
    tvb.datatypes.structural
    tvb.datatypes.surfaces
    tvb.datatypes.temporal_correlations
    tvb.datatypes.time_series
    tvb.datatypes.tracts
    tvb.datatypes.volumes
 
i
tvb.interfaces
    tvb.interfaces.command.benchmark
    tvb.interfaces.command.demos.datatypes.modify_h5_metadata
    tvb.interfaces.command.demos.datatypes.read_from_h5
    tvb.interfaces.command.demos.datatypes.search_and_export
    tvb.interfaces.command.demos.importers.h5_import
    tvb.interfaces.command.demos.importers.new_importer
    tvb.interfaces.command.demos.importers.new_importer_launcher
    tvb.interfaces.command.demos.operations.run_analyzer
    tvb.interfaces.command.demos.operations.run_simulation
    tvb.interfaces.command.demos.operations.run_workflow
    tvb.interfaces.command.demos.project.project_export
    tvb.interfaces.command.demos.project.project_import
    tvb.interfaces.command.lab
    tvb.interfaces.web.controllers.base_controller
    tvb.interfaces.web.controllers.burst.base_controller
    tvb.interfaces.web.controllers.burst.burst_controller
    tvb.interfaces.web.controllers.burst.dynamic_model_controller
    tvb.interfaces.web.controllers.burst.exploration_controller
    tvb.interfaces.web.controllers.burst.noise_configuration_controller
    tvb.interfaces.web.controllers.burst.region_model_parameters_controller
    tvb.interfaces.web.controllers.common
    tvb.interfaces.web.controllers.decorators
    tvb.interfaces.web.controllers.flow_controller
    tvb.interfaces.web.controllers.help.help_config
    tvb.interfaces.web.controllers.help.help_controller
    tvb.interfaces.web.controllers.project.figure_controller
    tvb.interfaces.web.controllers.project.project_controller
    tvb.interfaces.web.controllers.settings_controller
    tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller
    tvb.interfaces.web.controllers.spatial.local_connectivity_controller
    tvb.interfaces.web.controllers.spatial.region_stimulus_controller
    tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller
    tvb.interfaces.web.controllers.spatial.surface_stimulus_controller
    tvb.interfaces.web.controllers.users_controller
    tvb.interfaces.web.entities.context_model_parameters
    tvb.interfaces.web.entities.context_overlay
    tvb.interfaces.web.entities.context_selected_adapter
    tvb.interfaces.web.request_handler
    tvb.interfaces.web.run
    tvb.interfaces.web.structure
 
s
tvb.simulator
    tvb.simulator.common
    tvb.simulator.coupling
    tvb.simulator.descriptors
    tvb.simulator.history
    tvb.simulator.integrators
    tvb.simulator.models
    tvb.simulator.models.base
    tvb.simulator.models.epileptor
    tvb.simulator.models.hopfield
    tvb.simulator.models.jansen_rit
    tvb.simulator.models.larter_breakspear
    tvb.simulator.models.linear
    tvb.simulator.models.oscillator
    tvb.simulator.models.stefanescu_jirsa
    tvb.simulator.models.wilson_cowan
    tvb.simulator.models.wong_wang
    tvb.simulator.monitors
    tvb.simulator.noise
    tvb.simulator.plot.phase_plane_interactive
    tvb.simulator.plot.power_spectra_interactive
    tvb.simulator.plot.timeseries_interactive
    tvb.simulator.simulator