The Virtual Brain Project

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simulator Package

configurations_h5

class tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5(path)[source]

Bases: tvb.core.neotraits._h5core.H5File

static get_full_class_name(class_entity)[source]
load_from_reference(gid)[source]
store_config_as_reference(config)[source]

cortex_h5

class tvb.core.entities.file.simulator.cortex_h5.CortexH5(path)[source]

Bases: tvb.core.neotraits._h5core.H5File

coupling_h5

class tvb.core.entities.file.simulator.coupling_h5.DifferenceH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.HyperbolicTangentH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.KuramotoH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.LinearH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.PreSigmoidalH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.ScalingH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.SigmoidalH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.coupling_h5.SigmoidalJansenRitH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

equation_h5

class tvb.core.entities.file.simulator.equation_h5.AlphaH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.CosineH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.DiscreteEquationH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.DoubleExponentialH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.DoubleGaussianH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.EquationH5(path)[source]

Bases: tvb.core.neotraits._h5core.H5File

load_into(datatype)[source]
class tvb.core.entities.file.simulator.equation_h5.FirstOrderVolterraH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.GammaH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.GaussianH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.GeneralizedSigmoidH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.LinearH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.MixtureOfGammasH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.PulseTrainH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.SigmoidH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

class tvb.core.entities.file.simulator.equation_h5.SinusoidH5(path)[source]

Bases: tvb.core.entities.file.simulator.equation_h5.EquationH5

h5_factory

tvb.core.entities.file.simulator.h5_factory.config_h5_factory(config_class)[source]
tvb.core.entities.file.simulator.h5_factory.coupling_h5_factory(coupling_class)[source]
tvb.core.entities.file.simulator.h5_factory.equation_h5_factory(equation_class)[source]
tvb.core.entities.file.simulator.h5_factory.integrator_h5_factory(integrator_class)[source]
tvb.core.entities.file.simulator.h5_factory.model_h5_factory(model_class)[source]
tvb.core.entities.file.simulator.h5_factory.monitor_h5_factory(model_class)[source]
tvb.core.entities.file.simulator.h5_factory.noise_h5_factory(noise_class)[source]

integrator_h5

class tvb.core.entities.file.simulator.integrator_h5.IntegratorH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.integrator_h5.IntegratorStochasticH5(path)[source]

Bases: tvb.core.entities.file.simulator.integrator_h5.IntegratorH5

load_into(datatype)[source]
store(datatype, scalars_only=False, store_references=False)[source]

model_h5

class tvb.core.entities.file.simulator.model_h5.Epileptor2DH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.EpileptorCodim3H5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.EpileptorCodim3SlowModH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.EpileptorH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.EpileptorRestingStateH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.Generic2dOscillatorH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.HopfieldH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.JansenRitH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.KuramotoH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.LarterBreakspearH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.LinearH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.ReducedSetFitzHughNagumoH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.ReducedSetHindmarshRoseH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.ReducedWongWangExcInhH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.ReducedWongWangH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.StateVariablesDecoder[source]

Bases: json.decoder.JSONDecoder

dict_array(dictionary)[source]
class tvb.core.entities.file.simulator.model_h5.StateVariablesEncoder(*, skipkeys=False, ensure_ascii=True, check_circular=True, allow_nan=True, sort_keys=False, indent=None, separators=None, default=None)[source]

Bases: json.encoder.JSONEncoder

default(o)[source]
class tvb.core.entities.file.simulator.model_h5.SupHopfH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.WilsonCowanH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.ZerlautFirstOrderH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.model_h5.ZerlautSecondOrderH5(path)[source]

Bases: tvb.core.entities.file.simulator.model_h5.ZerlautFirstOrderH5

class tvb.core.entities.file.simulator.model_h5.ZetterbergJansenH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

monitor_h5

class tvb.core.entities.file.simulator.monitor_h5.BoldH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

store(datatype, scalars_only=False, store_references=False)[source]
class tvb.core.entities.file.simulator.monitor_h5.BoldRegionROIH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.BoldH5

class tvb.core.entities.file.simulator.monitor_h5.EEGH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.ProjectionH5

store(datatype, scalars_only=False, store_references=False)[source]
class tvb.core.entities.file.simulator.monitor_h5.GlobalAverageH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

class tvb.core.entities.file.simulator.monitor_h5.MEGH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.ProjectionH5

store(datatype, scalars_only=False, store_references=False)[source]
class tvb.core.entities.file.simulator.monitor_h5.MonitorH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

class tvb.core.entities.file.simulator.monitor_h5.ProjectionH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

store(datatype, scalars_only=False, store_references=False)[source]
class tvb.core.entities.file.simulator.monitor_h5.RawH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

class tvb.core.entities.file.simulator.monitor_h5.SpatialAverageH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

class tvb.core.entities.file.simulator.monitor_h5.SubSampleH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

class tvb.core.entities.file.simulator.monitor_h5.TemporalAverageH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.MonitorH5

class tvb.core.entities.file.simulator.monitor_h5.iEEGH5(path)[source]

Bases: tvb.core.entities.file.simulator.monitor_h5.ProjectionH5

store(datatype, scalars_only=False, store_references=False)[source]

noise_h5

class tvb.core.entities.file.simulator.noise_h5.AdditiveH5(path)[source]

Bases: tvb.core.entities.file.simulator.noise_h5.NoiseH5

class tvb.core.entities.file.simulator.noise_h5.MultiplicativeH5(path)[source]

Bases: tvb.core.entities.file.simulator.noise_h5.NoiseH5

load_into(datatype)[source]
store(datatype, scalars_only=False, store_references=False)[source]
class tvb.core.entities.file.simulator.noise_h5.NoiseH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

simulator_h5

class tvb.core.entities.file.simulator.simulator_h5.SimulatorH5(path)[source]

Bases: tvb.core.entities.file.simulator.configurations_h5.SimulatorConfigurationH5

load_into(datatype)[source]
store(datatype, scalars_only=False, store_references=False)[source]