The Virtual Brain Project

Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z

_

__call__() (tvb.simulator.coupling.PreSigmoidal method)
__init__() (tvb.simulator.models.epileptor.Epileptor method)
(tvb.simulator.models.hopfield.Hopfield method)
(tvb.simulator.models.jansen_rit.JansenRit method)
(tvb.simulator.models.larter_breakspear.LarterBreakspear method)
(tvb.simulator.models.oscillator.Generic2dOscillator method)
(tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo method)
(tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose method)
(tvb.simulator.models.wilson_cowan.WilsonCowan method)
(tvb.simulator.models.wong_wang.ReducedWongWang method)
(tvb.simulator.noise.Noise method)

A

ABCAdapter (class in tvb.core.adapters.abcadapter)
ABCAsynchronous (class in tvb.core.adapters.abcadapter)
ABCDisplayer (class in tvb.core.adapters.abcdisplayer)
ABCExporter (class in tvb.adapters.exporters.abcexporter)
ABCRemover (class in tvb.core.adapters.abcremover)
ABCSynchronous (class in tvb.core.adapters.abcadapter)
ABCUploader (class in tvb.adapters.uploaders.abcuploader)
accepted__aggregation_functions() (tvb.interfaces.web.controllers.flow_controller.FlowController static method)
accepts() (tvb.adapters.exporters.abcexporter.ABCExporter method)
ACCESS_MODE_TVB_FILES (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
AdapterConfiguration (class in tvb.core.entities.transient.burst_configuration_entities)
add2session() (in module tvb.interfaces.web.controllers.common)
add_adapter_to_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
add_child() (tvb.datatypes.annotations.AnnotationTerm method)
add_condition() (tvb.basic.filters.chain.FilterChain method)
add_entries_to_config_file() (tvb.basic.config.stored.SettingsManager method)
add_interface_to_session() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method)
add_members_to_project() (tvb.core.entities.storage.project_dao.CaseDAO method)
add_operation_additional_info() (tvb.core.adapters.abcadapter.ABCAdapter method)
add_portlet_to_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
add_scientific_fields() (tvb.core.entities.transient.context_overlay.CommonDetails method)
add_session() (in module tvb.core.entities.storage.session_maker)
add_to_path() (tvb.adapters.analyzers.matlab_worker.MatlabWorker method)
add_view_step() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
add_warning() (tvb.datatypes.surfaces.ValidationResult method)
add_workflow() (tvb.core.entities.transient.burst_export_entities.BurstInformation method)
add_workflow_step() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
Additive (in module tvb.simulator.noise)
adjacencies (tvb.core.entities.transient.graph_structures.NodeStructure attribute)
ADMINISTRATOR_BLANK_PWD (tvb.basic.config.settings.WebAdminSettings attribute)
algo_identifier (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute)
ALGO_INFO (tvb.core.entities.transient.burst_export_entities.StepInfo attribute)
Algorithm (in module tvb.core.entities.model.model_operation)
algorithm (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)
(tvb.basic.filters.chain.FilterChain attribute)
algorithm_category (tvb.basic.filters.chain.FilterChain attribute)
algorithm_category_replacement (tvb.basic.filters.chain.FilterChain attribute)
algorithm_replacement (tvb.basic.filters.chain.FilterChain attribute)
AlgorithmCategory (in module tvb.core.entities.model.model_operation)
AlgorithmTransientGroup (class in tvb.core.entities.model.model_operation)
ALL (tvb.basic.profile.TvbProfile attribute)
all_exporters (tvb.adapters.exporters.export_manager.ExportManager attribute)
ALLEN_MOUSE_CONNECTIVITY_CACHE_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute)
AllenConnectomeBuilder (class in tvb.adapters.creators.allen_creator)
ALLOW_NESTED_TRANSACTIONS (tvb.basic.config.settings.DBSettings attribute)
Alpha (in module tvb.datatypes.equations)
ANALYZE_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
ANALYZERS_ONLINE_HELP_SHORTCUTS (tvb.interfaces.web.structure.WebStructure attribute)
AnnotationArray (in module tvb.datatypes.annotations)
AnnotationTerm (class in tvb.datatypes.annotations)
append_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
append_required_defaults() (tvb.core.adapters.input_tree.InputTreeManager method)
(tvb.core.adapters.input_tree2.InputTreeManager method)
append_to_path() (tvb.basic.config.environment.Environment method)
apply_equation() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
(tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
apply_focal_point() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
(tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
AREA_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
AreasVolumeTreshold() (in module tvb.adapters.creators.allen_creator)
AreasVoxelTreshold() (in module tvb.adapters.creators.allen_creator)
Args (class in tvb.basic.traits.util)
Array (in module tvb.basic.traits.types_mapped_light)
(in module tvb.core.traits.types_mapped)
array (tvb.simulator.descriptors.NDArray.State attribute)
array_size2kb() (tvb.core.adapters.abcadapter.ABCAsynchronous method)
ArrayNode (class in tvb.basic.traits.itree_model)
AsciiValidator (class in tvb.interfaces.web.controllers.settings_controller)
ASP_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
astr() (in module tvb.simulator.common)
ATT_UID (tvb.core.services.operation_service.OperationService attribute)
attach_db_events() (in module tvb.core.traits.db_events)
ATTR_ONTOLOGY_DEFINITION (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
ATTR_ONTOLOGY_LABEL (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
ATTR_ONTOLOGY_RELATION (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
ATTR_ONTOLOGY_SYN (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
ATTR_ONTOLOGY_URI (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
ATTR_TVB_ID (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
ATTR_TVB_LABEL (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
available_algorithms (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter attribute)
available_couplings (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)
available_integrators (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)
available_models (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)
available_monitors (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)

B

BalloonModel (in module tvb.analyzers.fmri_balloon)
BalloonModelAdapter (class in tvb.adapters.analyzers.fmri_balloon_adapter)
BASE_VERSION (tvb.basic.config.settings.VersionSettings attribute)
BaseArray (in module tvb.datatypes.arrays)
BaseBCT (class in tvb.adapters.analyzers.bct_adapters)
BaseController (class in tvb.interfaces.web.controllers.base_controller)
BaseExportHelp (class in tvb.core.entities.transient.burst_export_entities)
BaseHistory (class in tvb.simulator.history)
BaseSettingsProfile (class in tvb.basic.config.profile_settings)
BaseStorageException
BaseTimeseriesMetricAlgorithm (in module tvb.analyzers.metrics_base)
BaseUndirected (class in tvb.adapters.analyzers.bct_adapters)
bct_description() (in module tvb.adapters.analyzers.bct_adapters)
Bench (class in tvb.interfaces.command.benchmark)
betweenness_bin() (in module tvb.analyzers.graph)
BIN_FOLDER (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
Bold (in module tvb.simulator.monitors)
BoldRegionROI (in module tvb.simulator.monitors)
Bool (in module tvb.basic.traits.types_basic)
BOOL_VALUE_PREFIX (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute)
BoolArray (in module tvb.datatypes.arrays)
BrainSkull (in module tvb.datatypes.surfaces)
BrainstormGainMatrixImporter (class in tvb.adapters.uploaders.projection_matrix_importer)
BrainstormSensorUploader (class in tvb.adapters.uploaders.sensors_importer)
BrainViewer (class in tvb.adapters.visualizers.brain)
BRCOImporter (class in tvb.adapters.uploaders.brco_importer)
Buffer (class in tvb.simulator.common)
buffer (tvb.simulator.history.DenseHistory attribute)
BUFFER_CAPACITY (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute)
buffer_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager.H5pyStorageBuffer method)
build_adapter() (tvb.core.adapters.abcadapter.ABCAdapter static method)
build_adapter_from_class() (tvb.core.adapters.abcadapter.ABCAdapter static method)
build_adapter_from_declaration() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method)
build_artificial_root_structure() (tvb.core.entities.transient.graph_structures.NodeStructure static method)
build_connectivity_measure() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
build_datatype_filters() (tvb.core.entities.transient.filtering.StaticFiltersFactory static method)
build_display_result() (tvb.core.adapters.abcdisplayer.ABCDisplayer method)
build_float_value_wrapper() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
build_int_value_wrapper() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
build_logger() (tvb.basic.logger.builder.LoggerBuilder method)
build_node_for_datatype() (tvb.core.entities.transient.graph_structures.NodeData static method)
build_node_for_operation() (tvb.core.entities.transient.graph_structures.NodeData static method)
build_node_info() (tvb.core.entities.transient.pse.ContextDiscretePSE method)
build_noise() (in module tvb.datatypes.noise_framework)
build_operations_filters() (tvb.core.entities.transient.filtering.StaticFiltersFactory static method)
build_portlet_interface() (tvb.core.services.burst_service.BurstService method)
build_projection_instance() (in module tvb.adapters.uploaders.projection_matrix_importer)
build_structure_for_datatype() (tvb.core.entities.transient.graph_structures.NodeStructure static method)
build_structure_for_operation() (tvb.core.entities.transient.graph_structures.NodeStructure static method)
build_structure_for_operation_group() (tvb.core.entities.transient.graph_structures.NodeStructure static method)
build_template_params_for_subselectable_datatype() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method)
BURST_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
burst_preview() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method)
BurstBaseController (class in tvb.interfaces.web.controllers.burst.base_controller)
BurstConfiguration (in module tvb.core.entities.model.model_burst)
BurstController (class in tvb.interfaces.web.controllers.burst.burst_controller)
BurstInformation (class in tvb.core.entities.transient.burst_export_entities)
BurstNameForm (class in tvb.interfaces.web.controllers.burst.burst_controller)
BurstService (class in tvb.core.services.burst_service)
BurstServiceException

C

cached_simulator_input_tree (tvb.interfaces.web.controllers.burst.burst_controller.BurstController attribute)
can_be_active() (tvb.adapters.analyzers.bct_adapters.BaseBCT static method)
(tvb.core.adapters.abcadapter.ABCAdapter static method)
cancel_or_remove_burst() (tvb.core.services.burst_service.BurstService method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
CaseDAO (class in tvb.core.entities.storage.project_dao)
center_vertices() (in module tvb.datatypes.surfaces)
CentralityEdgeBinary (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityEdgeWeighted (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityEigenVector (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityKCoreness (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityKCorenessBD (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityNodeBinary (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityNodeWeighted (class in tvb.adapters.analyzers.bct_centrality_adapters)
CentralityShortcuts (class in tvb.adapters.analyzers.bct_centrality_adapters)
CENTRES_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
CENTRES_TOKEN2 (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
CFF_Importer (class in tvb.adapters.uploaders.cff_importer)
chained_validators (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute)
(tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute)
(tvb.interfaces.web.controllers.project.project_controller.EditForm attribute)
(tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute)
(tvb.interfaces.web.controllers.users_controller.EditUserForm attribute)
(tvb.interfaces.web.controllers.users_controller.LoginForm attribute)
(tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute)
(tvb.interfaces.web.controllers.users_controller.RegisterForm attribute)
change_algorithm() (in module tvb.core.entities.model.db_update_scripts.helper)
change_selected_tab() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
check_admin() (in module tvb.interfaces.web.controllers.decorators)
check_created() (tvb.core.entities.file.files_helper.FilesHelper method)
check_db_url() (tvb.core.services.settings_service.SettingsService method)
(tvb.interfaces.web.controllers.settings_controller.SettingsController method)
check_login() (tvb.core.services.user_service.UserService static method)
check_status_for_visualizer() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
check_upload_size() (tvb.interfaces.web.request_handler.RequestHandler static method)
check_user() (in module tvb.interfaces.web.controllers.decorators)
chunk_iter() (in module tvb.adapters.uploaders.tract_importer)
CLASS_NAME (tvb.datatype_removers.remover_region_mapping.RegionMappingRemover attribute)
(tvb.datatype_removers.remover_region_mapping.RegionVolumeMappingRemover attribute)
clean_files_on_disk() (tvb.interfaces.web.request_handler.RequestHandler static method)
clean_from_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
cleanup() (tvb.adapters.analyzers.matlab_worker.MatlabWorker method)
cleanup_metapath() (in module tvb.basic.profile)
clear_data_for_portlet() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method)
clone() (tvb.core.entities.model.model_burst.TabConfiguration method)
(tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration method)
close_file() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
close_session() (tvb.core.entities.storage.session_maker.SessionsStack method)
close_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method)
CLUSTER_NODE_NAME (tvb.basic.config.settings.ClusterSettings attribute)
CLUSTER_NODES_LOG_FILE (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute)
ClusteringCoefficient (class in tvb.adapters.analyzers.bct_clustering_adapters)
ClusteringCoefficientBU (class in tvb.adapters.analyzers.bct_clustering_adapters)
ClusteringCoefficientWD (class in tvb.adapters.analyzers.bct_clustering_adapters)
ClusteringCoefficientWU (class in tvb.adapters.analyzers.bct_clustering_adapters)
ClusterSchedulerClient (class in tvb.core.services.backend_client)
ClusterSettings (class in tvb.basic.config.settings)
ClusterTimedRotatingFileHandler (class in tvb.config.logger.cluster_handler)
CODE_CHECKED_TO_VERSION (tvb.config.profile_settings.TestSQLiteProfile attribute)
CODE_GID (tvb.core.entities.transient.context_overlay.CommonDetails attribute)
CODE_OPERATION_GROUP_ID (tvb.core.entities.transient.context_overlay.CommonDetails attribute)
CODE_OPERATION_GROUP_NAME (tvb.core.entities.transient.context_overlay.CommonDetails attribute)
CODE_OPERATION_TAG (tvb.core.entities.transient.context_overlay.CommonDetails attribute)
CodeUpdateManager (class in tvb.core.code_versions.code_update_manager)
coherence() (in module tvb.analyzers.node_coherence)
coherence_mlab() (in module tvb.analyzers.node_coherence)
CoherenceSpectrum (in module tvb.datatypes.spectral)
col (tvb.interfaces.command.benchmark.Bench attribute)
collapse_params() (in module tvb.basic.traits.parameters_factory)
color_texture_to_list() (in module tvb.core.services.texture_to_json)
coloured() (tvb.simulator.noise.Noise method)
COLW (tvb.interfaces.command.benchmark.Bench attribute)
COMMAND_PROFILE (tvb.basic.profile.TvbProfile attribute)
CommandSettingsProfile (class in tvb.config.profile_settings)
CommonDetails (class in tvb.core.entities.transient.context_overlay)
Complex (in module tvb.basic.traits.types_basic)
ComplexArray (in module tvb.datatypes.arrays)
ComplexCoherenceSpectrum (in module tvb.datatypes.spectral)
ComplexDtypeNode (class in tvb.basic.traits.itree_model)
compute_2d_view() (in module tvb.adapters.visualizers.matrix_viewer)
compute_bursts_disk_size() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
compute_connectivity_global_params() (tvb.adapters.visualizers.connectivity.ConnectivityViewer method)
compute_data_for_gradient_view() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
compute_disk_size_for_started_ops() (tvb.core.entities.storage.operation_dao.OperationDAO method)
compute_operation_name() (tvb.core.entities.transient.context_overlay.CommonDetails static method)
compute_parameters() (tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.connectivity.Connectivity2DViewer method)
(tvb.adapters.visualizers.connectivity.Connectivity3DViewer static method)
(tvb.adapters.visualizers.eeg_monitor.EegMonitor method)
compute_params() (tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin method)
compute_phase_plane() (tvb.adapters.visualizers.phase_plane_interactive.PhaseLineD3 method)
(tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method)
compute_preview_parameters() (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method)
compute_radii() (in module tvb.analyzers.fcd_matrix)
compute_raw_matrix_params() (tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin static method)
compute_required_info() (tvb.adapters.visualizers.eeg_monitor.EegMonitor method)
compute_size_on_disk() (tvb.core.entities.file.files_helper.FilesHelper static method)
compute_table_name() (in module tvb.core.traits.core)
compute_topography_data() (tvb.adapters.visualizers.topographic.TopographyCalculations static method)
compute_user_generated_disk_size() (tvb.core.entities.storage.project_dao.CaseDAO method)
(tvb.core.services.user_service.UserService static method)
configure() (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method)
(tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method)
(tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method)
(tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method)
(tvb.adapters.analyzers.fourier_adapter.FourierAdapter method)
(tvb.adapters.analyzers.ica_adapter.ICAAdapter method)
(tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method)
(tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method)
(tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method)
(tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method)
(tvb.adapters.analyzers.pca_adapter.PCAAdapter method)
(tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method)
(tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
(tvb.simulator.models.hopfield.Hopfield method)
configure_simulator_parameters() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
configure_white() (tvb.simulator.noise.Noise method)
Connectivity (in module tvb.datatypes.connectivity)
Connectivity2DViewer (class in tvb.adapters.visualizers.connectivity)
Connectivity3DViewer (class in tvb.adapters.visualizers.connectivity)
CONNECTIVITY_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
ConnectivityAnnotations (in module tvb.datatypes.annotations)
ConnectivityAnnotationsView (class in tvb.adapters.visualizers.annotations_viewer)
ConnectivityCreator (class in tvb.adapters.creators.connectivity_creator)
ConnectivityEdgeBundle (class in tvb.adapters.visualizers.connectivity_edge_bundle)
ConnectivityMeasure (in module tvb.datatypes.graph)
ConnectivityMeasureImporter (class in tvb.adapters.uploaders.connectivity_measure_importer)
ConnectivityMeasureOnSurfaceViewer (class in tvb.adapters.visualizers.surface_view)
ConnectivityMeasureVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping)
ConnectivityRemover (class in tvb.datatype_removers.remover_connectivity)
ConnectivityViewer (class in tvb.adapters.visualizers.connectivity)
const_indices (tvb.simulator.history.SparseHistory attribute)
Construct_centres() (in module tvb.adapters.creators.allen_creator)
ConstructingSC() (in module tvb.adapters.creators.allen_creator)
ConstructTractLengths() (in module tvb.adapters.creators.allen_creator)
context_selected() (in module tvb.interfaces.web.controllers.decorators)
ContextDiscretePSE (class in tvb.core.entities.transient.pse)
ContextLocalConnectivity (class in tvb.core.entities.transient.context_local_connectivity)
ContinuousWaveletTransform (in module tvb.analyzers.wavelet)
ContinuousWaveletTransformAdapter (class in tvb.adapters.analyzers.wavelet_adapter)
convert_brainstorm_to_tvb() (in module tvb.datatypes.sensors_bst_to_tvb)
convert_ui_inputs() (tvb.core.adapters.abcadapter.ABCAdapter method)
(tvb.core.adapters.input_tree.InputTreeManager method)
(tvb.core.adapters.input_tree2.InputTreeManager method)
copy() (tvb.basic.traits.core.TraitsInfo method)
copy_burst() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
copy_file() (tvb.core.entities.file.files_helper.FilesHelper static method)
copy_zip_entry_into_temp() (in module tvb.basic.readers)
CorrelationCoefficient (in module tvb.analyzers.correlation_coefficient)
CorrelationCoefficients (in module tvb.datatypes.graph)
Cortex (in module tvb.datatypes.cortex)
CORTICAL_INFO (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
CorticalSurface (in module tvb.datatypes.surfaces)
Cosine (in module tvb.datatypes.equations)
count_all_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
count_bursts_with_name() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
count_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
count_datatypes_generated_from() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
count_datatypes_in_burst() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
count_datatypes_in_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
count_filtered_operations() (tvb.core.services.project_service.ProjectService static method)
count_projects_for_name() (tvb.core.entities.storage.project_dao.CaseDAO method)
count_resulted_datatypes() (tvb.core.entities.storage.operation_dao.OperationDAO method)
count_users_for_name() (tvb.core.entities.storage.project_dao.CaseDAO method)
Coupling (in module tvb.simulator.coupling)
Covariance (in module tvb.datatypes.graph)
CovarianceVisualizer (class in tvb.adapters.visualizers.covariance)
create_and_store_workflow() (tvb.core.services.workflow_service.WorkflowService static method)
create_date (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
create_eeg_ts() (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method)
create_json() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
create_link() (tvb.core.services.flow_service.FlowService static method)
create_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
create_new() (tvb.interfaces.web.controllers.users_controller.UserController method)
create_new_portlet_configuration() (tvb.core.portlets.portlet_configurer.PortletConfigurer method)
create_region_ts() (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method)
create_row_of_specs() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
create_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
create_user() (tvb.core.services.user_service.UserService method)
CreateFileOrder() (in module tvb.adapters.creators.allen_creator)
createlink() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
CrossCoherenceVisualizer (class in tvb.adapters.visualizers.cross_coherence)
CrossCorrelate (in module tvb.analyzers.cross_correlation)
CrossCorrelateAdapter (class in tvb.adapters.analyzers.cross_correlation_adapter)
CrossCorrelation (in module tvb.datatypes.temporal_correlations)
CrossCorrelationVisualizer (class in tvb.adapters.visualizers.cross_correlation)
CSVConnectivityImporter (class in tvb.adapters.uploaders.csv_connectivity_importer)
CSVConnectivityParser (class in tvb.adapters.uploaders.csv_connectivity_importer)
current (tvb.basic.profile.TvbProfile attribute)
current_page (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute)
CURRENT_PROFILE_NAME (tvb.basic.profile.TvbProfile attribute)
current_session (tvb.core.entities.storage.session_maker.SessionsStack attribute)
current_state (tvb.simulator.history.DenseHistory attribute)
cvars (tvb.simulator.history.BaseHistory attribute)

D

DAO (class in tvb.core.entities.storage)
data (tvb.core.entities.transient.burst_export_entities.BaseExportHelp attribute)
(tvb.core.entities.transient.graph_structures.NodeStructure attribute)
DATA_STATE (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_SUBJECT (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TAG_1 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TAG_2 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TAG_3 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TAG_4 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TAG_5 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TITLE (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute)
DATA_TYPES_PAGE_SIZE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute)
DATA_VERSION (tvb.basic.config.settings.VersionSettings attribute)
DATA_VERSION_ATTRIBUTE (tvb.basic.config.settings.VersionSettings attribute)
DataType (in module tvb.core.entities.model.model_datatype)
datatype (tvb.basic.filters.chain.FilterChain attribute)
datatype_details() (in module tvb.interfaces.command.lab)
DATATYPE_INDEX_KEY (tvb.core.entities.transient.burst_configuration_entities.WorkflowStepConfiguration attribute)
datatype_replacement (tvb.basic.filters.chain.FilterChain attribute)
DatatypeDAO (class in tvb.core.entities.storage.datatype_dao)
DataTypeGroup (in module tvb.core.entities.model.model_datatype)
DatatypeMeasure (in module tvb.datatypes.mapped_values)
DataTypeMetaData (class in tvb.core.entities.transient.structure_entities)
DatatypeNode (class in tvb.basic.traits.itree_model)
DataTypeOverlayDetails (class in tvb.core.entities.transient.context_overlay)
date2string() (in module tvb.core.utils)
DATE_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
DATE_TIME_FORMAT (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute)
DATETIME_VALUE_PREFIX (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute)
DB_STRUCTURE_VERSION (tvb.basic.config.settings.VersionSettings attribute)
DBSettings (class in tvb.basic.config.settings)
declarative_count (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute)
(tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute)
(tvb.interfaces.web.controllers.project.project_controller.EditForm attribute)
(tvb.interfaces.web.controllers.settings_controller.AsciiValidator attribute)
(tvb.interfaces.web.controllers.settings_controller.DiskSpaceValidator attribute)
(tvb.interfaces.web.controllers.settings_controller.MatlabValidator attribute)
(tvb.interfaces.web.controllers.settings_controller.PortValidator attribute)
(tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute)
(tvb.interfaces.web.controllers.settings_controller.SurfaceVerticesNrValidator attribute)
(tvb.interfaces.web.controllers.settings_controller.ThreadNrValidator attribute)
(tvb.interfaces.web.controllers.users_controller.EditUserForm attribute)
(tvb.interfaces.web.controllers.users_controller.LoginForm attribute)
(tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute)
(tvb.interfaces.web.controllers.users_controller.RegisterForm attribute)
(tvb.interfaces.web.controllers.users_controller.UniqueUsername attribute)
DeclarativeMetaType (class in tvb.core.traits.core)
default() (tvb.core.utils.TVBJSONEncoder method)
(tvb.interfaces.web.controllers.flow_controller.FlowController method)
DEFAULT_ADMIN_EMAIL (tvb.basic.config.settings.WebAdminSettings attribute)
DEFAULT_COLOR (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute)
DEFAULT_STORAGE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
(tvb.config.profile_settings.TestSQLiteProfile attribute)
DEFAULT_SUBJECT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
Degree (class in tvb.adapters.analyzers.bct_degree_adapters)
DegreeIOD (class in tvb.adapters.analyzers.bct_degree_adapters)
delayed_state (tvb.simulator.history.DenseHistory attribute)
delays (tvb.simulator.history.BaseHistory attribute)
delete_members_for_project() (tvb.core.entities.storage.project_dao.CaseDAO method)
delete_project() (tvb.core.entities.storage.project_dao.CaseDAO method)
delete_user() (tvb.core.services.user_service.UserService method)
DELIMITER_OPTIONS (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute)
DenseHistory (class in tvb.simulator.history)
DensityDirected (class in tvb.adapters.analyzers.bct_degree_adapters)
DensityUndirected (class in tvb.adapters.analyzers.bct_degree_adapters)
DESCRIPTION_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
dfun() (tvb.simulator.models.oscillator.Generic2dOscillator method)
Dict (in module tvb.basic.traits.types_basic)
DictionaireBuilder() (in module tvb.adapters.creators.allen_creator)
DictNode (class in tvb.basic.traits.itree_model)
Difference (in module tvb.simulator.coupling)
Dim (class in tvb.simulator.descriptors)
DiscreteEquation (in module tvb.datatypes.equations)
DiscretePSEAdapter (class in tvb.adapters.visualizers.pse_discrete)
DiskSpaceValidator (class in tvb.interfaces.web.controllers.settings_controller)
display_connectivity() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController static method)
display_surface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method)
displayresultfigures() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method)
displayzoomedimage() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method)
distance_inv() (in module tvb.analyzers.graph)
DistanceDBIN (class in tvb.adapters.analyzers.bct_adapters)
DistanceDWEI (class in tvb.adapters.analyzers.bct_adapters)
DistanceNETW (class in tvb.adapters.analyzers.bct_adapters)
DistanceRDA (class in tvb.adapters.analyzers.bct_adapters)
DistanceRDM (class in tvb.adapters.analyzers.bct_adapters)
do_operation_launch() (in module tvb.core.operation_async_launcher)
do_step() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
Dop853 (in module tvb.simulator.integrators)
Dop853Stochastic (in module tvb.simulator.integrators)
Dopri5 (in module tvb.simulator.integrators)
Dopri5Stochastic (in module tvb.simulator.integrators)
DoubleExponential (in module tvb.datatypes.equations)
DoubleGaussian (in module tvb.datatypes.equations)
downgrade() (in module tvb.core.entities.model.db_update_scripts.001_update_db)
(in module tvb.core.entities.model.db_update_scripts.002_update_db)
(in module tvb.core.entities.model.db_update_scripts.003_update_db)
(in module tvb.core.entities.model.db_update_scripts.004_update_db)
(in module tvb.core.entities.model.db_update_scripts.005_update_db)
(in module tvb.core.entities.model.db_update_scripts.006_update_db)
(in module tvb.core.entities.model.db_update_scripts.007_update_db)
(in module tvb.core.entities.model.db_update_scripts.008_update_db)
(in module tvb.core.entities.model.db_update_scripts.009_update_db)
(in module tvb.core.entities.model.db_update_scripts.010_update_db)
(in module tvb.core.entities.model.db_update_scripts.011_update_db)
(in module tvb.core.entities.model.db_update_scripts.012_update_db)
(in module tvb.core.entities.model.db_update_scripts.013_update_db)
(in module tvb.core.entities.model.db_update_scripts.014_update_db)
(in module tvb.core.entities.model.db_update_scripts.015_update_db)
(in module tvb.core.entities.model.db_update_scripts.016_update_db)
(in module tvb.core.entities.model.db_update_scripts.017_update_db)
DownloadAndConstructMatrix() (in module tvb.adapters.creators.allen_creator)
downloaddata() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
downloadimage() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method)
downloadproject() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
draw_discrete_exploration() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method)
draw_isocline_exploration() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method)
DType (in module tvb.basic.traits.types_basic)
dtype (tvb.simulator.descriptors.NDArray attribute)
DualBrainViewer (class in tvb.adapters.visualizers.brain)
dump_with_precision() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method)
Dynamic (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller)
(in module tvb.core.entities.model.model_burst)
dynamic_detail() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
DynamicModelController (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller)

E

edit_model_parameters() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
edit_result_figure() (tvb.core.services.figure_service.FigureService method)
edit_user() (tvb.core.services.user_service.UserService method)
EditForm (class in tvb.interfaces.web.controllers.project.project_controller)
editone() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
EditPreview (class in tvb.interfaces.web.controllers.project.figure_controller)
editresultfigures() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method)
editstructure() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
EditUserForm (class in tvb.interfaces.web.controllers.users_controller)
EEG (in module tvb.simulator.monitors)
EEG_SENSORS (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute)
EEGCap (in module tvb.datatypes.surfaces)
EEGLAB (class in tvb.adapters.uploaders.signals_importer)
EegMonitor (class in tvb.adapters.visualizers.eeg_monitor)
efficiency_bin() (in module tvb.analyzers.graph)
ELEM_ROOT (tvb.core.entities.file.xml_metadata_handlers.XMLWriter attribute)
empty_msg (tvb.interfaces.web.controllers.users_controller.LoginForm attribute)
ENABLED (tvb.basic.config.settings.WebSettings attribute)
EnhancedDictionary (class in tvb.basic.config.utils)
ensure_db() (tvb.adapters.uploaders.abcuploader.ABCUploader method)
Enumerate (in module tvb.basic.traits.types_basic)
EnumerateNode (class in tvb.basic.traits.itree_model)
env (tvb.basic.profile.TvbProfile attribute)
Environment (class in tvb.basic.config.environment)
Epileptor (in module tvb.simulator.models.epileptor)
epochs_interval() (in module tvb.analyzers.fcd_matrix)
Equation (in module tvb.datatypes.equations)
EquationDisplayer (in module tvb.interfaces.web.entities.context_model_parameters)
error() (tvb.interfaces.web.controllers.base_controller.BaseController method)
es_icvar (tvb.simulator.history.DenseHistory attribute)
es_idelays (tvb.simulator.history.DenseHistory attribute)
es_node_ids (tvb.simulator.history.DenseHistory attribute)
es_weights (tvb.simulator.history.DenseHistory attribute)
EulerDeterministic (in module tvb.simulator.integrators)
EulerStochastic (in module tvb.simulator.integrators)
EXCEPTION_DATATYPE_GROUP (tvb.core.entities.storage.root_dao.RootDAO attribute)
EXCEPTION_DATATYPE_SIMULATION (tvb.core.entities.storage.root_dao.RootDAO attribute)
execute() (tvb.core.services.backend_client.ClusterSchedulerClient static method)
(tvb.core.services.backend_client.StandAloneClient static method)
execute_matlab() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
execute_post() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
expire_session() (in module tvb.interfaces.web.controllers.common)
export() (tvb.adapters.exporters.abcexporter.ABCExporter method)
(tvb.adapters.exporters.obj_export.ObjSurfaceExporter method)
(tvb.adapters.exporters.tvb_export.TVBExporter method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
export_burst() (tvb.adapters.exporters.export_manager.ExportManager method)
export_data() (tvb.adapters.exporters.export_manager.ExportManager method)
export_folder (tvb.adapters.exporters.export_manager.ExportManager attribute)
EXPORT_FOLDER_NAME (tvb.adapters.exporters.export_manager.ExportManager attribute)
export_project() (tvb.adapters.exporters.export_manager.ExportManager method)
Exportable (class in tvb.core.entities.exportable)
ExportException
ExportManager (class in tvb.adapters.exporters.export_manager)
expose_fragment() (in module tvb.interfaces.web.controllers.decorators)
expose_json() (in module tvb.interfaces.web.controllers.decorators)
expose_numpy_array() (in module tvb.interfaces.web.controllers.decorators)
expose_page() (in module tvb.interfaces.web.controllers.decorators)
extract_matlab_doc_string() (in module tvb.core.utils)

F

FaceSurface (in module tvb.datatypes.surfaces)
fastICA (in module tvb.analyzers.ica)
Fcd (in module tvb.datatypes.fcd)
FcdCalculator (in module tvb.analyzers.fcd_matrix)
FFT (in module tvb.analyzers.fft)
FIELD_NAME (tvb.datatype_removers.remover_region_mapping.RegionMappingRemover attribute)
(tvb.datatype_removers.remover_region_mapping.RegionVolumeMappingRemover attribute)
fields (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute)
(tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute)
(tvb.interfaces.web.controllers.project.project_controller.EditForm attribute)
(tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute)
(tvb.interfaces.web.controllers.users_controller.EditUserForm attribute)
(tvb.interfaces.web.controllers.users_controller.LoginForm attribute)
(tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute)
(tvb.interfaces.web.controllers.users_controller.RegisterForm attribute)
FieldTripUploader (class in tvb.adapters.uploaders.fieldtrip_importer)
(class in tvb.adapters.uploaders.signals_importer)
FigureController (class in tvb.interfaces.web.controllers.project.figure_controller)
FigureService (class in tvb.core.services.figure_service)
FILE_EXTENSION (tvb.core.entities.file.xml_metadata_handlers.XMLWriter attribute)
file_name (tvb.core.entities.transient.structure_entities.GenericMetaData attribute)
file_storage (tvb.basic.traits.core.TraitsInfo attribute)
FileReader (class in tvb.basic.readers)
FilesHelper (class in tvb.core.entities.file.files_helper)
FileStorageException
FileStructureException
FilesUpdateManager (class in tvb.core.entities.file.files_update_manager)
FileVersioningException
fill_all_graph_adjiacences() (tvb.core.entities.transient.graph_structures.FullGraphStructure method)
fill_before_insert() (in module tvb.core.traits.db_events)
fill_default_attributes() (tvb.interfaces.web.controllers.base_controller.BaseController method)
(tvb.interfaces.web.controllers.burst.base_controller.BurstBaseController method)
(tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
(tvb.interfaces.web.controllers.flow_controller.FlowController method)
(tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
(tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method)
(tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
(tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
(tvb.interfaces.web.controllers.users_controller.UserController method)
fill_defaults() (tvb.core.adapters.input_tree.InputTreeManager static method)
(tvb.core.adapters.input_tree2.InputTreeManager static method)
fill_from_datatype() (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails method)
fill_input_tree_with_options() (tvb.core.adapters.input_tree.InputTreeManager method)
(tvb.core.adapters.input_tree2.InputTreeManager method)
fill_object() (tvb.core.entities.transient.pse.ContextDiscretePSE method)
fill_overlay_attributes() (tvb.interfaces.web.controllers.base_controller.BaseController method)
fill_shape_size() (tvb.core.entities.transient.graph_structures.FullGraphStructure method)
filter_category() (tvb.core.entities.storage.operation_dao.OperationDAO method)
FilterChain (class in tvb.basic.filters.chain)
Final (class in tvb.simulator.descriptors)
Final.State (class in tvb.simulator.descriptors)
find_module() (tvb.basic.config.utils.LibraryModulesFinder method)
find_project() (tvb.core.services.project_service.ProjectService method)
find_relative_path() (tvb.core.entities.file.files_helper.FilesHelper static method)
FiniteSupportEquation (in module tvb.datatypes.equations)
fire_operation() (tvb.core.services.flow_service.FlowService method)
fire_simulation() (in module tvb.interfaces.command.lab)
FIRST_RUN_STORAGE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
FirstOrderVolterra (in module tvb.datatypes.equations)
flaten_input_interface() (tvb.core.adapters.abcadapter.ABCAdapter method)
flatten() (tvb.core.adapters.input_tree.InputTreeManager method)
(tvb.core.adapters.input_tree2.InputTreeManager method)
Float (in module tvb.basic.traits.types_basic)
FloatArray (in module tvb.datatypes.arrays)
FlowCoefficients (class in tvb.adapters.analyzers.bct_centrality_adapters)
FlowController (class in tvb.interfaces.web.controllers.flow_controller)
FlowService (class in tvb.core.services.flow_service)
flush_buffered_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager.H5pyStorageBuffer method)
FooDataImporter (class in tvb.interfaces.command.demos.importers.new_importer)
form_prefix() (tvb.core.adapters.input_tree.InputTreeManager static method)
(tvb.core.adapters.input_tree2.InputTreeManager static method)
format_bytes_human() (in module tvb.core.utils)
format_timedelta() (in module tvb.core.utils)
FourierAdapter (class in tvb.adapters.analyzers.fourier_adapter)
FourierSpectrum (in module tvb.datatypes.spectral)
FourierSpectrumDisplay (class in tvb.adapters.visualizers.fourier_spectrum)
from_db() (tvb.adapters.visualizers.pse_isocline.PseIsoModel class method)
from_dict() (tvb.core.entities.exportable.Exportable method)
from_json() (tvb.basic.filters.chain.FilterChain class method)
FS (tvb.interfaces.command.benchmark.Bench attribute)
FULL_VIEW (tvb.core.entities.transient.filtering.StaticFiltersFactory attribute)
FullGraphStructure (class in tvb.core.entities.transient.graph_structures)
FunctionalConnectivityDynamicsAdapter (class in tvb.adapters.analyzers.fcd_adapter)

G

Gamma (in module tvb.datatypes.equations)
Gaussian (in module tvb.datatypes.equations)
GeneralizedSigmoid (in module tvb.datatypes.equations)
generate() (tvb.simulator.noise.Noise method)
generate_call_out_control() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
generate_guid() (in module tvb.core.utils)
generate_preview() (tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method)
(tvb.adapters.visualizers.connectivity.ConnectivityViewer method)
(tvb.adapters.visualizers.eeg_monitor.EegMonitor method)
(tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method)
(tvb.adapters.visualizers.histogram.HistogramViewer method)
(tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin method)
(tvb.adapters.visualizers.pca.PCA method)
(tvb.adapters.visualizers.time_series.TimeSeries method)
(tvb.adapters.visualizers.topographic.TopographicViewer method)
(tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method)
(tvb.core.adapters.abcdisplayer.ABCDisplayer method)
Generic2dOscillator (in module tvb.simulator.models.oscillator)
GenericMetaData (class in tvb.core.entities.transient.structure_entities)
get() (in module tvb.basic.traits.util)
get_adapter_template() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
get_adapters_chain() (tvb.core.portlets.xml_reader.XMLPortletReader method)
get_adapters_from_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_administrators() (tvb.core.entities.storage.project_dao.CaseDAO method)
(tvb.core.services.user_service.UserService static method)
get_algorithm() (tvb.core.entities.transient.burst_export_entities.StepInfo method)
get_algorithm_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_algorithm_by_identifier() (tvb.core.services.flow_service.FlowService static method)
get_algorithm_by_module() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_algorithm_by_module_and_class() (tvb.core.services.flow_service.FlowService static method)
get_algorithm_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_algorithms_dictionary() (tvb.core.portlets.xml_reader.XMLPortletReader method)
get_all_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_all_datatypes_in_burst() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_all_operations_for_uploaders() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_all_projects() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_all_users() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_allen_mouse_cache_folder() (tvb.core.entities.file.files_helper.FilesHelper method)
get_analyze_groups() (tvb.core.services.flow_service.FlowService method)
get_applicable_adapters() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_attribute() (tvb.basic.config.stored.SettingsManager method)
get_available_bursts() (tvb.core.services.burst_service.BurstService static method)
get_available_datatypes() (tvb.core.services.flow_service.FlowService static method)
get_available_portlets() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
(tvb.core.services.burst_service.BurstService static method)
get_available_selections() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
get_burst_by_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_burst_for_operation_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_bursts_for_project() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_cached_dynamic() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
get_category_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.flow_service.FlowService method)
get_class_by_name() (in module tvb.core.entities.load)
get_color() (in module tvb.simulator.plot.phase_plane_interactive)
get_color_schemes_json() (tvb.interfaces.web.controllers.users_controller.UserController method)
get_components_sizes() (in module tvb.analyzers.graph)
get_configurable_interface() (tvb.core.portlets.portlet_configurer.PortletConfigurer method)
get_configure_info() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
get_configured_portlets() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_configured_portlets_for_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_connectivity() (tvb.core.services.burst_config_serialization.SerializationManager method)
get_connectivity_parameters() (tvb.adapters.visualizers.connectivity.ConnectivityViewer static method)
get_creator_and_interface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method)
get_current_default() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
get_current_input_tree() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
get_current_project() (in module tvb.interfaces.web.controllers.common)
get_current_step() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
get_current_substep() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
get_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
get_data_for_model_param() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
get_data_from_burst_configuration() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
get_data_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_data_shape() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
get_data_uploader_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
get_datatype_and_datatypegroup_inputs_for_operation() (tvb.core.services.project_service.ProjectService method)
get_datatype_by_gid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_datatype_by_id() (tvb.core.entities.storage.root_dao.RootDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_datatype_details() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
(tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
get_datatype_group_by_gid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_datatype_group_disk_size() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_datatype_in_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_datatypegroup_by_gid() (tvb.core.services.project_service.ProjectService static method)
get_datatypegroup_by_op_group_id() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_datatypes_for_range() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_datatypes_from_datatype_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_datatypes_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_datatypes_inputs_for_operation_group() (tvb.core.services.project_service.ProjectService method)
get_default_pse_viewer() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method)
get_disk_free_space() (tvb.core.services.settings_service.SettingsService static method)
get_disk_size_for_operation() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_dynamic() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_dynamic_by_name() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_dynamics_for_user() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_equation_chart() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
(tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
get_equation_for_parameter() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
get_events_path() (tvb.core.adapters.introspector.Introspector method)
get_execution_time_approximation() (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
get_export_file_extension() (tvb.adapters.exporters.abcexporter.ABCExporter method)
(tvb.adapters.exporters.obj_export.ObjSurfaceExporter method)
(tvb.adapters.exporters.tvb_export.TVBExporter method)
get_export_file_name() (tvb.adapters.exporters.abcexporter.ABCExporter method)
get_exporters_for_data() (tvb.adapters.exporters.export_manager.ExportManager method)
get_field_array() (in module tvb.datatypes.sensors_bst_to_tvb)
get_figure_count() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_figures_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_file_data_version() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method)
(tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
get_filterable_meta() (tvb.core.entities.transient.structure_entities.DataTypeMetaData class method)
(tvb.core.services.project_service.ProjectService static method)
get_filtered_datatypes() (in module tvb.core.entities.load)
get_filtered_operations() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_filters_for_type() (tvb.basic.filters.chain.FilterChain class method)
get_focal_points() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
get_focal_points_for_parameter() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
get_from_session() (in module tvb.interfaces.web.controllers.common)
get_generic_entity() (tvb.core.entities.storage.root_dao.RootDAO method)
(tvb.core.services.flow_service.FlowService static method)
get_gid_attribute() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
get_group_description() (tvb.core.adapters.abcadapter.ABCAdapter class method)
get_group_name() (tvb.core.adapters.abcadapter.ABCAdapter class method)
get_help_url() (tvb.interfaces.web.controllers.help.help_config.HelpConfig method)
get_history_status() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_images_folder() (tvb.core.entities.file.files_helper.FilesHelper method)
get_input_tree() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
(tvb.adapters.analyzers.bct_adapters.BaseUndirected method)
(tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method)
(tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method)
(tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method)
(tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method)
(tvb.adapters.analyzers.fourier_adapter.FourierAdapter method)
(tvb.adapters.analyzers.ica_adapter.ICAAdapter method)
(tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method)
(tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method)
(tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method)
(tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method)
(tvb.adapters.analyzers.pca_adapter.PCAAdapter method)
(tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method)
(tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method)
(tvb.adapters.creators.connectivity_creator.ConnectivityCreator method)
(tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method)
(tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method)
(tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
(tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.adapters.uploaders.abcuploader.ABCUploader method)
(tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method)
(tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.brain.DualBrainViewer method)
(tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method)
(tvb.adapters.visualizers.connectivity.ConnectivityViewer method)
(tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method)
(tvb.adapters.visualizers.covariance.CovarianceVisualizer method)
(tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizer method)
(tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizer method)
(tvb.adapters.visualizers.eeg_monitor.EegMonitor method)
(tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method)
(tvb.adapters.visualizers.histogram.HistogramViewer method)
(tvb.adapters.visualizers.ica.ICA method)
(tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method)
(tvb.adapters.visualizers.matrix_viewer.MappedArrayVisualizer method)
(tvb.adapters.visualizers.pca.PCA method)
(tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method)
(tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method)
(tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method)
(tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method)
(tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizer method)
(tvb.adapters.visualizers.region_volume_mapping.MappedArrayVolumeVisualizer method)
(tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method)
(tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiser method)
(tvb.adapters.visualizers.sensors.SensorsViewer method)
(tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewer method)
(tvb.adapters.visualizers.surface_view.RegionMappingViewer method)
(tvb.adapters.visualizers.surface_view.SurfaceViewer method)
(tvb.adapters.visualizers.time_series.TimeSeries method)
(tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method)
(tvb.adapters.visualizers.topographic.TopographicViewer method)
(tvb.adapters.visualizers.tract.TractViewer method)
(tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
get_input_tree2() (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
get_inputs() (tvb.core.portlets.xml_reader.XMLPortletReader method)
get_inputs_dict() (tvb.core.portlets.xml_reader.PortletWrapper method)
get_label() (tvb.adapters.exporters.abcexporter.ABCExporter method)
(tvb.adapters.exporters.obj_export.ObjSurfaceExporter method)
(tvb.adapters.exporters.tvb_export.TVBExporter method)
get_last_data_with_uid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_launchable_algorithms() (tvb.core.services.flow_service.FlowService method)
get_launchable_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_lconn_equation() (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method)
get_library_folder() (tvb.basic.config.environment.Environment method)
get_link() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_linkable_projects() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
get_linkable_projects_for_user() (tvb.core.entities.storage.project_dao.CaseDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_linked_datatypes_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_links_for_datatype() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_links_for_project() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_logged_user() (in module tvb.interfaces.web.controllers.common)
get_logger() (in module tvb.basic.logger.builder)
get_matlab_executable() (in module tvb.core.utils)
get_max_burst_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_members_of_project() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_message_from_session() (in module tvb.interfaces.web.controllers.common)
get_metadata() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
get_metric_matrix() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method)
(tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method)
get_min_max_values() (tvb.datatypes.structural.VolumetricDataMixin method)
get_node_matrix() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method)
get_node_text() (tvb.core.entities.file.xml_metadata_handlers.XMLReader static method)
get_non_validated_entities() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_one_dimensional_list() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method)
get_operation_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_operation_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_operation_details() (tvb.core.services.project_service.ProjectService method)
(tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
get_operation_folder() (tvb.core.entities.file.files_helper.FilesHelper method)
get_operation_group_by_gid() (tvb.core.services.project_service.ProjectService static method)
get_operation_group_by_id() (tvb.core.services.project_service.ProjectService static method)
get_operation_id() (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation method)
get_operation_meta_file_path() (tvb.core.entities.file.files_helper.FilesHelper method)
get_operation_numbers() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.flow_service.FlowService static method)
get_operation_process_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_operationgroup_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_operationgroup_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_operations_for_datatype() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_operations_for_datatype_group() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_operations_in_burst() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_operations_in_group() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_output() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
(tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method)
(tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method)
(tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method)
(tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method)
(tvb.adapters.analyzers.fourier_adapter.FourierAdapter method)
(tvb.adapters.analyzers.ica_adapter.ICAAdapter method)
(tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method)
(tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method)
(tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method)
(tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method)
(tvb.adapters.analyzers.pca_adapter.PCAAdapter method)
(tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method)
(tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method)
(tvb.adapters.creators.connectivity_creator.ConnectivityCreator method)
(tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method)
(tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method)
(tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
(tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.adapters.uploaders.brco_importer.BRCOImporter method)
(tvb.adapters.uploaders.cff_importer.CFF_Importer method)
(tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method)
(tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method)
(tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader method)
(tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method)
(tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method)
(tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method)
(tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method)
(tvb.adapters.uploaders.nifti_importer.NIFTIImporter method)
(tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method)
(tvb.adapters.uploaders.projection_matrix_importer.BrainstormGainMatrixImporter method)
(tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method)
(tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer method)
(tvb.adapters.uploaders.sensors_importer.BrainstormSensorUploader method)
(tvb.adapters.uploaders.sensors_importer.Sensors_Importer method)
(tvb.adapters.uploaders.signals_importer.EEGLAB method)
(tvb.adapters.uploaders.signals_importer.FieldTripUploader method)
(tvb.adapters.uploaders.signals_importer.VHDR method)
(tvb.adapters.uploaders.tvb_importer.TVBImporter method)
(tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method)
(tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
(tvb.core.adapters.abcdisplayer.ABCDisplayer method)
(tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method)
get_portlet() (tvb.core.entities.model.model_burst.TabConfiguration method)
(tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation method)
get_portlet_by_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
(tvb.core.services.burst_service.BurstService static method)
get_portlet_by_identifier() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
(tvb.core.services.burst_service.BurstService static method)
get_portlet_configurable_interface() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_portlet_session_configuration() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_portlet_status() (tvb.core.services.burst_service.BurstService static method)
get_previews() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_previous_selected_rangers() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_project_by_gid() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_project_by_id() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_project_disk_size() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_project_folder() (tvb.core.entities.file.files_helper.FilesHelper method)
get_project_for_operation() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_project_meta_file_path() (tvb.core.entities.file.files_helper.FilesHelper method)
get_project_structure() (tvb.core.services.project_service.ProjectService method)
get_project_structure_grouping() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
get_project_uploader_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
get_projects_for_user() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_pse_filters() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
get_python_filter_equivalent() (tvb.basic.filters.chain.FilterChain method)
get_range_values() (tvb.core.services.operation_service.OperationService method)
get_raw_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.flow_service.FlowService static method)
get_reduced_simulator_interface() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_remover() (in module tvb.core.removers_factory)
get_removers_dict() (tvb.core.adapters.introspector.Introspector method)
get_required_disk_size() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
(tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method)
(tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method)
(tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method)
(tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method)
(tvb.adapters.analyzers.fourier_adapter.FourierAdapter method)
(tvb.adapters.analyzers.ica_adapter.ICAAdapter method)
(tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method)
(tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method)
(tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method)
(tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method)
(tvb.adapters.analyzers.pca_adapter.PCAAdapter method)
(tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method)
(tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method)
(tvb.adapters.creators.connectivity_creator.ConnectivityCreator method)
(tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method)
(tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method)
(tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
(tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.adapters.uploaders.abcuploader.ABCUploader method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
(tvb.core.adapters.abcdisplayer.ABCDisplayer method)
get_required_memory_size() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
(tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method)
(tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method)
(tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method)
(tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method)
(tvb.adapters.analyzers.fourier_adapter.FourierAdapter method)
(tvb.adapters.analyzers.ica_adapter.ICAAdapter method)
(tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method)
(tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method)
(tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method)
(tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method)
(tvb.adapters.analyzers.pca_adapter.PCAAdapter method)
(tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method)
(tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method)
(tvb.adapters.creators.connectivity_creator.ConnectivityCreator method)
(tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method)
(tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method)
(tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
(tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.adapters.uploaders.abcuploader.ABCUploader method)
(tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method)
(tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method)
(tvb.adapters.visualizers.connectivity.ConnectivityViewer method)
(tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method)
(tvb.adapters.visualizers.eeg_monitor.EegMonitor method)
(tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method)
(tvb.adapters.visualizers.histogram.HistogramViewer method)
(tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method)
(tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin method)
(tvb.adapters.visualizers.pca.PCA method)
(tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method)
(tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method)
(tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method)
(tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method)
(tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method)
(tvb.adapters.visualizers.sensors.SensorsViewer method)
(tvb.adapters.visualizers.surface_view.SurfaceViewer method)
(tvb.adapters.visualizers.time_series.TimeSeries method)
(tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method)
(tvb.adapters.visualizers.topographic.TopographicViewer method)
(tvb.adapters.visualizers.tract.TractViewer method)
(tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
get_results_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService static method)
get_select_existent_entities() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method)
get_selected_burst() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_selected_portlets() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_selected_stimulus() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
get_selections_for_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.flow_service.FlowService static method)
get_series_json() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method)
(tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController static method)
get_session_connectivity() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method)
get_session_surface() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
get_session_tree_for_key() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method)
get_simple_adapter_interface() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
get_spatial_equation() (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
get_spatial_equation_chart() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
get_sql_filter_equivalent() (tvb.basic.filters.chain.FilterChain method)
get_sql_mapping() (in module tvb.core.traits.sql_mapping)
get_stimulus_chunk() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
get_stored_pse_filters() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.flow_service.FlowService static method)
get_summary_for_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_supported_types() (tvb.adapters.exporters.abcexporter.ABCExporter method)
(tvb.adapters.exporters.obj_export.ObjSurfaceExporter method)
(tvb.adapters.exporters.tvb_export.TVBExporter method)
get_surface() (tvb.core.services.burst_config_serialization.SerializationManager method)
get_surface_model_parameters_data() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
get_system_user() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_template_for_adapter() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
get_template_from_context() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
get_temporal_equation() (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
get_temporal_equation_chart() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
get_traited_instance_for_name() (in module tvb.basic.traits.parameters_factory)
get_traited_subclasses() (in module tvb.basic.traits.parameters_factory)
get_ui_description() (tvb.core.adapters.abcadapter.ABCAdapter class method)
get_ui_fields() (tvb.core.entities.transient.context_overlay.CommonDetails method)
get_ui_message() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method)
get_ui_name() (tvb.core.adapters.abcadapter.ABCAdapter class method)
get_ui_subsection() (tvb.core.adapters.abcadapter.ABCAdapter class method)
get_unique_file_name() (in module tvb.core.utils)
get_update_scripts() (tvb.core.code_versions.base_classes.UpdateManager method)
get_upload_algorithms() (tvb.core.services.flow_service.FlowService static method)
get_upload_input_tree() (tvb.adapters.uploaders.abcuploader.ABCUploader method)
(tvb.adapters.uploaders.brco_importer.BRCOImporter method)
(tvb.adapters.uploaders.cff_importer.CFF_Importer method)
(tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method)
(tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method)
(tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader method)
(tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method)
(tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method)
(tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method)
(tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method)
(tvb.adapters.uploaders.nifti_importer.NIFTIImporter method)
(tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method)
(tvb.adapters.uploaders.projection_matrix_importer.BrainstormGainMatrixImporter method)
(tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method)
(tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer method)
(tvb.adapters.uploaders.sensors_importer.BrainstormSensorUploader method)
(tvb.adapters.uploaders.sensors_importer.Sensors_Importer method)
(tvb.adapters.uploaders.signals_importer.EEGLAB method)
(tvb.adapters.uploaders.signals_importer.FieldTripUploader method)
(tvb.adapters.uploaders.signals_importer.VHDR method)
(tvb.adapters.uploaders.tract_importer.ZipTxtTractsImporter method)
(tvb.adapters.uploaders.tvb_importer.TVBImporter method)
(tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method)
(tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method)
(tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method)
get_upload_overlay() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_uploader_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_url_adapter() (tvb.interfaces.web.controllers.base_controller.BaseController static method)
get_user_by_email() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_user_by_id() (tvb.core.entities.storage.project_dao.CaseDAO method)
(tvb.core.services.user_service.UserService static method)
get_user_by_name() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_user_for_datatype() (tvb.core.entities.storage.project_dao.CaseDAO method)
get_users_for_project() (tvb.core.services.user_service.UserService method)
get_value_on_axe() (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method)
get_values_of_datatype() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
get_view_steps() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
get_viewer_color_scheme() (tvb.interfaces.web.controllers.users_controller.UserController method)
get_visualisers_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method)
get_visualisers_category() (tvb.core.services.flow_service.FlowService static method)
get_visualization_steps() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_visualizers_for_group() (tvb.core.services.flow_service.FlowService method)
get_visualizers_for_operation_id() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
get_volume_slice() (tvb.datatypes.structural.VolumetricDataMixin method)
get_volume_view() (tvb.datatypes.structural.VolumetricDataMixin method)
get_weights() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method)
get_workflow_by_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_workflow_for_operation_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_workflow_step_by_step_index() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_workflow_step_for_operation() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_workflow_steps() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
(tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
get_workflow_steps_for_position() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_workflows() (tvb.core.entities.transient.burst_export_entities.BurstInformation method)
get_workflows_for_burst() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method)
get_x_axis_range() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method)
getadapterinterface() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
getfiltereddatatypes() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
getmemberspage() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
gettemplatefordimensionselect() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
gid (tvb.core.entities.transient.structure_entities.GenericMetaData attribute)
GIFTIParser (class in tvb.adapters.uploaders.gifti.parser)
GIFTISurfaceImporter (class in tvb.adapters.uploaders.gifti_surface_importer)
GIFTITimeSeriesImporter (class in tvb.adapters.uploaders.gifti_timeseries_importer)
GlobalAverage (in module tvb.simulator.monitors)
GlobalVariance (in module tvb.analyzers.metric_variance_global)
graph_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
graph_components (tvb.core.entities.transient.graph_structures.FullGraphStructure attribute)
GraphComponent (class in tvb.core.entities.transient.graph_structures)
group (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
group_noise_array_by_state_var() (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController static method)
group_operation_launch() (tvb.core.services.operation_service.OperationService method)
group_parameter_values_by_name() (tvb.core.services.burst_config_serialization.SerializationManager static method)

H

H5Reader (class in tvb.basic.readers)
hamming() (in module tvb.analyzers.node_coherence)
handle_error() (in module tvb.interfaces.web.controllers.decorators)
has_children (tvb.core.entities.transient.structure_entities.StructureNode attribute)
has_error_message() (in module tvb.interfaces.web.controllers.common)
has_finished() (in module tvb.core.entities.model.model_operation)
has_model_pse_ranges() (tvb.core.services.burst_config_serialization.SerializationManager method)
has_nan (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute)
HAVE_STATE_VARIABLES (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)
HDF5StorageManager (class in tvb.core.entities.file.hdf5_storage_manager)
HDF5StorageManager.H5pyStorageBuffer (class in tvb.core.entities.file.hdf5_storage_manager)
heaviside() (in module tvb.simulator.common)
HELP_PAGE_PATH (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
HelpConfig (class in tvb.interfaces.web.controllers.help.help_config)
HelpController (class in tvb.interfaces.web.controllers.help.help_controller)
HEMISPHERE_INFO (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
HEMISPHERE_RIGHT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
HeunDeterministic (in module tvb.simulator.integrators)
HeunStochastic (in module tvb.simulator.integrators)
HistogramViewer (class in tvb.adapters.visualizers.histogram)
Hopfield (in module tvb.simulator.models.hopfield)
horizon (tvb.simulator.common.Buffer attribute)
HRFKernelEquation (in module tvb.datatypes.equations)
HyperbolicTangent (in module tvb.simulator.coupling)

I

ICA (class in tvb.adapters.visualizers.ica)
ICAAdapter (class in tvb.adapters.analyzers.ica_adapter)
Identity (in module tvb.simulator.integrators)
iEEG (in module tvb.simulator.monitors)
IMAGES_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute)
ImaginaryCoherenceDisplay (class in tvb.adapters.visualizers.complex_imaginary_coherence)
ImmutableAttrError
import_conn_zip() (in module tvb.interfaces.command.lab)
import_h5() (in module tvb.interfaces.command.demos.importers.h5_import)
import_project_operations() (tvb.core.services.import_service.ImportService method)
import_project_structure() (tvb.core.services.import_service.ImportService method)
import_workflow_steps() (tvb.core.services.import_service.ImportService method)
import_workflows() (tvb.core.services.import_service.ImportService method)
ImportService (class in tvb.core.services.import_service)
IN_OPERATION_EXECUTION_PROCESS (tvb.basic.config.settings.ClusterSettings attribute)
in_operations (tvb.core.entities.transient.graph_structures.GraphComponent attribute)
IncompatibleFileManagerException
IncorrectTypeAttrError
IndependentComponents (in module tvb.datatypes.mode_decompositions)
index() (tvb.core.entities.transient.burst_export_entities.StepInfo method)
(tvb.interfaces.web.controllers.base_controller.BaseController method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
(tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
(tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController method)
(tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method)
(tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
(tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method)
(tvb.interfaces.web.controllers.users_controller.UserController method)
index_in_tab (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration attribute)
IndexArray (in module tvb.datatypes.arrays)
init_cherrypy() (in module tvb.interfaces.web.run)
init_noise_config_values() (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController static method)
initialize() (in module tvb.core.services.initializer)
(tvb.simulator.history.BaseHistory method)
(tvb.simulator.history.DenseHistory method)
initialize_for_deployment() (tvb.basic.config.profile_settings.BaseSettingsProfile method)
(tvb.config.profile_settings.TestSQLiteProfile method)
(tvb.config.profile_settings.WebSettingsProfile method)
initialize_on_load() (in module tvb.core.traits.db_events)
initialize_profile() (tvb.basic.config.profile_settings.BaseSettingsProfile method)
(tvb.basic.config.profile_settings.LibrarySettingsProfile method)
(tvb.config.profile_settings.TestSQLiteProfile method)
(tvb.config.profile_settings.WebSettingsProfile method)
initialize_startup() (in module tvb.core.entities.model_manager)
initialize_storage() (in module tvb.core.services.project_service)
initialized (tvb.simulator.descriptors.Final.State attribute)
(tvb.simulator.descriptors.NDArray.State attribute)
initiate_operation() (tvb.core.services.operation_service.OperationService method)
initiate_prelaunch() (tvb.core.services.operation_service.OperationService method)
input_datatypes (tvb.core.entities.transient.graph_structures.GraphComponent attribute)
InputTreeManager (class in tvb.core.adapters.input_tree)
(class in tvb.core.adapters.input_tree2)
instance_state (tvb.simulator.descriptors.NDArray attribute)
Integer (in module tvb.basic.traits.types_basic)
IntegerArray (in module tvb.datatypes.arrays)
Integrator (in module tvb.simulator.integrators)
integrator_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
IntegratorStochastic (in module tvb.simulator.integrators)
INTERFACE_ATTRIBUTES (tvb.core.adapters.abcadapter.ABCAdapter attribute)
INTERFACE_ATTRIBUTES_ONLY (tvb.core.adapters.abcadapter.ABCAdapter attribute)
INTERNAL_SENSORS (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute)
introspect() (tvb.core.adapters.introspector.Introspector method)
IntrospectionException
Introspector (class in tvb.core.adapters.introspector)
InvalidExportDataException
InvalidFilterChainInput
InvalidFilterEntity
InvalidParameterException
InvalidPortletConfiguration
InvalidSettingsException
InvalidTransactionAccess
InvalidUpgradeScriptException
invalis_name_msg (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute)
iround() (in module tvb.simulator.common)
is_data_a_group() (tvb.adapters.exporters.abcexporter.ABCExporter method)
is_datatype_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
is_development() (tvb.basic.config.environment.Environment static method)
is_file_up_to_date() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method)
is_first_run() (tvb.basic.config.stored.SettingsManager method)
(tvb.basic.profile.TvbProfile static method)
is_framework_present() (tvb.basic.config.environment.Environment method)
is_group (tvb.core.entities.transient.structure_entities.StructureNode attribute)
is_irelevant (tvb.core.entities.transient.structure_entities.StructureNode attribute)
is_library_mode() (tvb.basic.profile.TvbProfile static method)
is_link (tvb.core.entities.transient.structure_entities.StructureNode attribute)
is_linux() (tvb.basic.config.environment.Environment method)
is_linux_deployment() (tvb.basic.config.environment.Environment method)
is_mac() (tvb.basic.config.environment.Environment static method)
is_mac_deployment() (tvb.basic.config.environment.Environment method)
IS_RUNNING_ON_CLUSTER_NODE (tvb.basic.config.settings.ClusterSettings attribute)
is_storage_ready() (tvb.interfaces.web.controllers.users_controller.UserController method)
is_upload_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService static method)
is_username_valid() (tvb.core.services.user_service.UserService static method)
is_valid_hdf5_file() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
is_windows() (tvb.basic.config.environment.Environment static method)
is_windows_deployment() (tvb.basic.config.environment.Environment method)
IS_WORK_IN_PROGRESS (tvb.basic.config.environment.Environment attribute)
IsoclinePSEAdapter (class in tvb.adapters.visualizers.pse_isocline)
ispublic() (in module tvb.basic.traits.util)

J

JansenRit (in module tvb.simulator.models.jansen_rit)
JOB_ID_STRING (tvb.basic.config.settings.ClusterSettings attribute)
JointDegree (class in tvb.adapters.analyzers.bct_degree_adapters)
jsonify() (in module tvb.interfaces.web.controllers.decorators)
JSONType (in module tvb.basic.traits.types_basic)

K

KEY_ADMIN_EMAIL (tvb.core.services.settings_service.SettingsService attribute)
KEY_ADMIN_NAME (tvb.core.services.settings_service.SettingsService attribute)
KEY_ADMIN_PWD (tvb.core.services.settings_service.SettingsService attribute)
KEY_ALL (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_ATTRIBUTES (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_AUTHOR (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_BI_WORKFLOWS (tvb.core.entities.transient.burst_export_entities.BurstInformation attribute)
KEY_BURST (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_CACHED_DYNAMIC_MODEL (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController attribute)
KEY_CLASS_NAME (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_CLUSTER (tvb.core.services.settings_service.SettingsService attribute)
KEY_CONDITION (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_CONTENT (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute)
KEY_CONTENT_MODULE (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute)
KEY_COUNT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_CREATE_DATA_DAY (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_CREATE_DATA_MONTH (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_CURRENT_ADAPTER_INFO (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute)
KEY_DATATYPE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_DATATYPE_ID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_DATE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_DB_URL (tvb.core.services.settings_service.SettingsService attribute)
KEY_DEFAULT (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_DESCRIPTION (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_DISABLED (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_DTYPE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_EDGE_TRACT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
KEY_EDGE_WEIGHT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
KEY_EXPORT_DATE (tvb.core.entities.transient.burst_export_entities.BaseExportHelp attribute)
KEY_FILENAME (tvb.core.entities.transient.structure_entities.GenericMetaData attribute)
KEY_FILTERABLE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_FK_OPERATION_GROUP (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_GID (tvb.core.entities.transient.pse.ContextDiscretePSE attribute)
(tvb.core.entities.transient.structure_entities.GenericMetaData attribute)
KEY_ID (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_INVALID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_IS_ADAPTER (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute)
KEY_LABEL (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_LINK (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_MATLAB_EXECUTABLE (tvb.core.services.settings_service.SettingsService attribute)
KEY_MAX_DISK_SPACE_USR (tvb.core.services.settings_service.SettingsService attribute)
KEY_MAX_NR_SURFACE_VERTEX (tvb.core.services.settings_service.SettingsService attribute)
KEY_MAX_NR_THREADS (tvb.core.services.settings_service.SettingsService attribute)
KEY_MAX_RANGE (tvb.core.services.settings_service.SettingsService attribute)
KEY_MODULE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_NAME (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_NODE_COORDINATES (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
KEY_NODE_HEMISPHERE (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
KEY_NODE_LABEL (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
KEY_NODE_REGION (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
KEY_NODE_TYPE (tvb.core.entities.transient.pse.ContextDiscretePSE attribute)
(tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_OP_GROUP_ID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_OPERATION_ALGORITHM (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_OPERATION_FILTERS (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute)
KEY_OPERATION_GROUP_NAME (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_OPERATION_ID (tvb.core.entities.transient.pse.ContextDiscretePSE attribute)
KEY_OPERATION_TAG (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_OPERATION_TYPE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_OPTIONS (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_PORT (tvb.core.services.settings_service.SettingsService attribute)
KEY_PORTLET_CONFIGURATION (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute)
KEY_RELEVANCY (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_REQUIRED (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_SELECTED_DB (tvb.core.services.settings_service.SettingsService attribute)
KEY_STATE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_STORAGE (tvb.core.services.settings_service.SettingsService attribute)
KEY_SUBJECT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TAG_1 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TAG_2 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TAG_3 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TAG_4 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TAG_5 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TITLE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
KEY_TOOLTIP (tvb.core.entities.transient.pse.ContextDiscretePSE attribute)
KEY_TREE_DEFAULT (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute)
KEY_TYPE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_UI_HIDE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_URL_WEB (tvb.core.services.settings_service.SettingsService attribute)
KEY_VALUE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEY_VERSION (tvb.core.entities.transient.burst_export_entities.BaseExportHelp attribute)
KEY_VIEW_STEPS (tvb.core.entities.transient.burst_export_entities.WorkflowInformation attribute)
KEY_WF_STEPS (tvb.core.entities.transient.burst_export_entities.WorkflowInformation attribute)
KEYS_DISPLAY_ORDER (tvb.core.services.settings_service.SettingsService attribute)
KEYWORD_OPTION (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEYWORD_PARAMS (tvb.core.adapters.abcadapter.ABCAdapter attribute)
KEYWORD_SEPARATOR (tvb.core.adapters.abcadapter.ABCAdapter attribute)
Kuramoto (in module tvb.simulator.coupling)
(in module tvb.simulator.models.oscillator)
KuramotoIndex (in module tvb.analyzers.metric_kuramoto_index)
kwd (tvb.basic.traits.util.Args attribute)

L

LarterBreakspear (in module tvb.simulator.models.larter_breakspear)
launch() (tvb.adapters.analyzers.bct_adapters.BaseBCT method)
(tvb.adapters.analyzers.bct_adapters.BaseUndirected method)
(tvb.adapters.analyzers.bct_adapters.DistanceDBIN method)
(tvb.adapters.analyzers.bct_adapters.DistanceNETW method)
(tvb.adapters.analyzers.bct_adapters.DistanceRDM method)
(tvb.adapters.analyzers.bct_adapters.ModularityOCSM method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityEdgeBinary method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityEdgeWeighted method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityEigenVector method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityKCoreness method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityKCorenessBD method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityNodeBinary method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityNodeWeighted method)
(tvb.adapters.analyzers.bct_centrality_adapters.CentralityShortcuts method)
(tvb.adapters.analyzers.bct_centrality_adapters.FlowCoefficients method)
(tvb.adapters.analyzers.bct_centrality_adapters.ParticipationCoefficient method)
(tvb.adapters.analyzers.bct_centrality_adapters.ParticipationCoefficientSign method)
(tvb.adapters.analyzers.bct_centrality_adapters.SubgraphCentrality method)
(tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficient method)
(tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientBU method)
(tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientWD method)
(tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientWU method)
(tvb.adapters.analyzers.bct_clustering_adapters.TransitivityBinaryDirected method)
(tvb.adapters.analyzers.bct_clustering_adapters.TransitivityBinaryUnDirected method)
(tvb.adapters.analyzers.bct_clustering_adapters.TransitivityWeightedDirected method)
(tvb.adapters.analyzers.bct_clustering_adapters.TransitivityWeightedUnDirected method)
(tvb.adapters.analyzers.bct_degree_adapters.Degree method)
(tvb.adapters.analyzers.bct_degree_adapters.DegreeIOD method)
(tvb.adapters.analyzers.bct_degree_adapters.DensityDirected method)
(tvb.adapters.analyzers.bct_degree_adapters.JointDegree method)
(tvb.adapters.analyzers.bct_degree_adapters.MatchingIndex method)
(tvb.adapters.analyzers.bct_degree_adapters.Strength method)
(tvb.adapters.analyzers.bct_degree_adapters.StrengthISOS method)
(tvb.adapters.analyzers.bct_degree_adapters.StrengthWeights method)
(tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method)
(tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method)
(tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method)
(tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method)
(tvb.adapters.analyzers.fourier_adapter.FourierAdapter method)
(tvb.adapters.analyzers.ica_adapter.ICAAdapter method)
(tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method)
(tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method)
(tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method)
(tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method)
(tvb.adapters.analyzers.pca_adapter.PCAAdapter method)
(tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method)
(tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method)
(tvb.adapters.creators.connectivity_creator.ConnectivityCreator method)
(tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method)
(tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method)
(tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method)
(tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method)
(tvb.adapters.uploaders.brco_importer.BRCOImporter method)
(tvb.adapters.uploaders.cff_importer.CFF_Importer method)
(tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method)
(tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method)
(tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader method)
(tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method)
(tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method)
(tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method)
(tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method)
(tvb.adapters.uploaders.nifti_importer.NIFTIImporter method)
(tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method)
(tvb.adapters.uploaders.projection_matrix_importer.BrainstormGainMatrixImporter method)
(tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method)
(tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer method)
(tvb.adapters.uploaders.sensors_importer.BrainstormSensorUploader method)
(tvb.adapters.uploaders.sensors_importer.Sensors_Importer method)
(tvb.adapters.uploaders.signals_importer.EEGLAB method)
(tvb.adapters.uploaders.signals_importer.FieldTripUploader method)
(tvb.adapters.uploaders.signals_importer.VHDR method)
(tvb.adapters.uploaders.tract_importer.TrackvizTractsImporter method)
(tvb.adapters.uploaders.tract_importer.ZipTxtTractsImporter method)
(tvb.adapters.uploaders.tvb_importer.TVBImporter method)
(tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method)
(tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method)
(tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method)
(tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.brain.DualBrainViewer method)
(tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method)
(tvb.adapters.visualizers.connectivity.ConnectivityViewer method)
(tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method)
(tvb.adapters.visualizers.covariance.CovarianceVisualizer method)
(tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizer method)
(tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizer method)
(tvb.adapters.visualizers.eeg_monitor.EegMonitor method)
(tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method)
(tvb.adapters.visualizers.histogram.HistogramViewer method)
(tvb.adapters.visualizers.ica.ICA method)
(tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method)
(tvb.adapters.visualizers.matrix_viewer.MappedArrayVisualizer method)
(tvb.adapters.visualizers.pca.PCA method)
(tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method)
(tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method)
(tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method)
(tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method)
(tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizer method)
(tvb.adapters.visualizers.region_volume_mapping.MappedArrayVolumeVisualizer method)
(tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method)
(tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiser method)
(tvb.adapters.visualizers.sensors.SensorsViewer method)
(tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewer method)
(tvb.adapters.visualizers.surface_view.RegionMappingViewer method)
(tvb.adapters.visualizers.surface_view.SurfaceViewer method)
(tvb.adapters.visualizers.time_series.TimeSeries method)
(tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method)
(tvb.adapters.visualizers.topographic.TopographicViewer method)
(tvb.adapters.visualizers.tract.TractViewer method)
(tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method)
(tvb.core.adapters.abcadapter.ABCAdapter method)
(tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method)
launch_burst() (tvb.core.services.burst_service.BurstService method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
launch_full_visualizer() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
launch_operation() (tvb.core.services.operation_service.OperationService method)
launch_simulation_workflow() (in module tvb.interfaces.command.demos.operations.run_workflow)
launch_validation() (tvb.core.model_validations.ModelValidator method)
launch_visualization() (tvb.core.services.burst_service.BurstService static method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
LaunchException
launchloader() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
LeafNode (class in tvb.basic.traits.itree_model)
LEFT_SUFFIX_RE (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute)
legendtext (built-in class)
LIBRARY_PROFILE (tvb.basic.profile.TvbProfile attribute)
LibraryImportError
LibraryModulesFinder (class in tvb.basic.config.utils)
LibrarySettingsProfile (class in tvb.basic.config.profile_settings)
LINE (tvb.interfaces.command.benchmark.Bench attribute)
LINE_SEPARATOR (tvb.core.entities.transient.pse.ContextDiscretePSE attribute)
Linear (in module tvb.datatypes.equations)
(in module tvb.simulator.coupling)
(in module tvb.simulator.models.linear)
linear_interp1d() (in module tvb.simulator.common)
Links (in module tvb.core.entities.model.model_datatype)
List (in module tvb.basic.traits.types_basic)
list_datatypes() (in module tvb.interfaces.command.lab)
list_projects() (in module tvb.interfaces.command.lab)
load_burst() (tvb.core.services.burst_service.BurstService method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
load_burst_entity() (tvb.core.services.import_service.ImportService method)
load_burst_from_json() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
load_burst_history() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
load_configured_visualizers() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
load_datatype_from_file() (tvb.core.services.import_service.ImportService method)
load_dt() (in module tvb.interfaces.command.lab)
load_entity_by_gid() (in module tvb.core.entities.load)
(tvb.core.adapters.abcadapter.ABCAdapter static method)
load_figure() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.figure_service.FigureService static method)
load_from_dict() (tvb.core.entities.transient.burst_export_entities.BurstInformation static method)
(tvb.core.entities.transient.burst_export_entities.WorkflowInformation static method)
(tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation static method)
(tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation static method)
load_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
load_module() (tvb.basic.config.utils.LibraryModulesFinder method)
load_operation() (tvb.core.services.flow_service.FlowService static method)
load_operation_by_gid() (tvb.core.services.project_service.ProjectService static method)
load_region_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
load_surface_stimulus() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
load_tab_configuration() (tvb.core.services.burst_service.BurstService method)
LocalConnectivity (in module tvb.datatypes.local_connectivity)
LocalConnectivityController (class in tvb.interfaces.web.controllers.spatial.local_connectivity_controller)
LocalConnectivityCreator (class in tvb.adapters.creators.local_connectivity_creator)
LocalConnectivityViewer (class in tvb.adapters.visualizers.local_connectivity_view)
LOCALHOST (tvb.basic.config.settings.WebSettings attribute)
LOCKS (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute)
log (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute)
log_debug() (in module tvb.simulator.common)
log_debug_array() (in module tvb.basic.traits.util)
LOGGER (tvb.adapters.uploaders.abcuploader.ABCUploader attribute)
(tvb.adapters.uploaders.brco.parser.XMLParser attribute)
logger (tvb.adapters.uploaders.cff_importer.CFF_Importer attribute)
(tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader attribute)
(tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter attribute)
(tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer attribute)
(tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute)
(tvb.adapters.uploaders.signals_importer.EEGLAB attribute)
(tvb.adapters.uploaders.signals_importer.FieldTripUploader attribute)
(tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter attribute)
(tvb.core.entities.storage.root_dao.RootDAO attribute)
(tvb.core.portlets.xml_reader.XMLPortletReader attribute)
(tvb.interfaces.command.demos.importers.new_importer.FooDataImporter attribute)
LOGGER_CONFIG_FILE_NAME (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
(tvb.basic.config.profile_settings.LibrarySettingsProfile attribute)
(tvb.basic.config.profile_settings.MATLABLibraryProfile attribute)
(tvb.basic.config.profile_settings.TestLibraryProfile attribute)
(tvb.config.profile_settings.WebSettingsProfile attribute)
LoggerBuilder (class in tvb.basic.logger.builder)
LoginForm (class in tvb.interfaces.web.controllers.users_controller)
logout() (tvb.interfaces.web.controllers.users_controller.UserController method)
LookUpTable (in module tvb.datatypes.lookup_tables)

M

MAGIC_NUMBER (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
main() (in module tvb.core.model_validations)
(in module tvb.interfaces.command.benchmark)
MAIN_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
make_model_and_integrator() (tvb.core.services.burst_config_serialization.SerializationManager method)
make_surface() (in module tvb.datatypes.surfaces)
map_astr() (in module tvb.simulator.common)
MapAsJson (in module tvb.basic.traits.types_basic)
MappedArray (in module tvb.datatypes.arrays)
MappedArraySVGVisualizerMixin (class in tvb.adapters.visualizers.matrix_viewer)
MappedArrayVisualizer (class in tvb.adapters.visualizers.matrix_viewer)
MappedArrayVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping)
MappedType (in module tvb.core.traits.types_mapped)
MappedTypeLight (in module tvb.basic.traits.types_mapped_light)
mark_burst_finished() (tvb.core.services.workflow_service.WorkflowService method)
mark_file_for_delete() (tvb.interfaces.web.controllers.base_controller.BaseController static method)
mark_invalid() (tvb.core.entities.transient.structure_entities.DataTypeMetaData method)
MatchingIndex (class in tvb.adapters.analyzers.bct_degree_adapters)
matlab() (tvb.adapters.analyzers.matlab_worker.MatlabWorker method)
matlab_paths (tvb.adapters.analyzers.matlab_worker.MatlabWorker attribute)
MATLAB_PROFILE (tvb.basic.profile.TvbProfile attribute)
MATLABLibraryProfile (class in tvb.basic.config.profile_settings)
MatlabValidator (class in tvb.interfaces.web.controllers.settings_controller)
MatlabWorker (class in tvb.adapters.analyzers.matlab_worker)
MatTimeSeriesImporter (class in tvb.adapters.uploaders.mat_timeseries_importer)
MAX_ASYNC_CONNECTIONS (tvb.basic.config.settings.DBSettings attribute)
MAX_CONNECTIONS (tvb.basic.config.settings.DBSettings attribute)
MAX_PREVIEW_DATA_LENGTH (tvb.adapters.visualizers.time_series.TimeSeries attribute)
MAX_RAY (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute)
MAX_VALUE (tvb.interfaces.web.controllers.settings_controller.SurfaceVerticesNrValidator attribute)
MAX_WEIGHT_VALUE (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute)
MeasurePointsSelection (in module tvb.core.entities.model.model_datatype)
MEG (in module tvb.simulator.monitors)
MEG_SENSORS (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute)
merge() (tvb.datatypes.surfaces.ValidationResult method)
merge_data() (tvb.core.entities.transient.structure_entities.DataTypeMetaData method)
MESSAGE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute)
meta_attributes_list (tvb.core.entities.transient.context_overlay.CommonDetails attribute)
MetaClassFactory() (in module tvb.core.entities.storage.session_maker)
metadata2tree() (tvb.core.entities.transient.structure_entities.StructureNode static method)
MetaType (class in tvb.basic.traits.core)
MIN_RAY (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute)
MIN_WEIGHT_VALUE (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute)
MissingDataFileException
MissingDataSetException
MissingEntityException
MixtureOfGammas (in module tvb.datatypes.equations)
Model (in module tvb.simulator.models.base)
model_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
ModelNumbaDfun (in module tvb.simulator.models.base)
ModelValidator (class in tvb.core.model_validations)
ModularityOCSM (class in tvb.adapters.analyzers.bct_adapters)
ModularityOpCSMU (class in tvb.adapters.analyzers.bct_adapters)
Monitor (in module tvb.simulator.monitors)
MouseBrainVisualizer() (in module tvb.adapters.creators.allen_creator)
move_datatype() (tvb.core.entities.file.files_helper.FilesHelper method)
MriVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping)
multiline_math_directives_to_matjax() (in module tvb.basic.traits.util)
Multiplicative (in module tvb.simulator.noise)

N

n_cvar (tvb.simulator.history.BaseHistory attribute)
n_mode (tvb.simulator.history.BaseHistory attribute)
n_nnzr (tvb.simulator.history.SparseHistory attribute)
n_nnzw (tvb.simulator.history.SparseHistory attribute)
n_node (tvb.simulator.history.BaseHistory attribute)
n_time (tvb.simulator.history.BaseHistory attribute)
name (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration attribute)
(tvb.core.entities.transient.graph_structures.NodeStructure attribute)
NAME_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
nan_allowed() (in module tvb.core.adapters.abcadapter)
nan_not_allowed() (in module tvb.core.adapters.abcadapter)
nbytes (tvb.simulator.history.BaseHistory attribute)
(tvb.simulator.history.DenseHistory attribute)
(tvb.simulator.history.SparseHistory attribute)
NDArray (class in tvb.simulator.descriptors)
NDArray.State (class in tvb.simulator.descriptors)
ndarray_to_http_binary() (in module tvb.interfaces.web.controllers.decorators)
NerfTable (in module tvb.datatypes.lookup_tables)
NestedTransactionUnsupported
NetworkxConnectivityImporter (class in tvb.adapters.uploaders.networkx_importer)
NetworkxParser (class in tvb.adapters.uploaders.networkx_connectivity.parser)
new_burst_configuration() (tvb.core.services.burst_service.BurstService method)
new_portlet_configuration() (tvb.core.services.burst_service.BurstService method)
new_project() (in module tvb.interfaces.command.lab)
NEW_SELECTION_NAME (tvb.interfaces.web.controllers.flow_controller.FlowController attribute)
NIFTIImporter (class in tvb.adapters.uploaders.nifti_importer)
NIFTIParser (class in tvb.adapters.uploaders.nifti.parser)
nnz_col_el_idx (tvb.simulator.history.SparseHistory attribute)
nnz_idelays (tvb.simulator.history.SparseHistory attribute)
nnz_mask (tvb.simulator.history.SparseHistory attribute)
nnz_row_el_idx (tvb.simulator.history.SparseHistory attribute)
nnz_row_idx (tvb.simulator.history.SparseHistory attribute)
nnz_weights (tvb.simulator.history.SparseHistory attribute)
no_dynamics_page() (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method)
node_entity_id (tvb.core.entities.transient.graph_structures.NodeData attribute)
NODE_ENV (tvb.basic.config.settings.ClusterSettings attribute)
node_gid (tvb.core.entities.transient.graph_structures.NodeStructure attribute)
node_subtitle (tvb.core.entities.transient.graph_structures.NodeData attribute)
node_type (tvb.core.entities.transient.graph_structures.NodeData attribute)
NodeCoherence (in module tvb.analyzers.node_coherence)
NodeCoherenceAdapter (class in tvb.adapters.analyzers.node_coherence_adapter)
NodeComplexCoherence (in module tvb.analyzers.node_complex_coherence)
NodeComplexCoherenceAdapter (class in tvb.adapters.analyzers.node_complex_coherence_adapter)
NodeCovariance (in module tvb.analyzers.node_covariance)
NodeCovarianceAdapter (class in tvb.adapters.analyzers.node_covariance_adapter)
NodeData (class in tvb.core.entities.transient.graph_structures)
noderemove() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
NodeStructure (class in tvb.core.entities.transient.graph_structures)
Noise (in module tvb.simulator.noise)
noise_configurable_parameters() (tvb.core.adapters.abcadapter.ABCAdapter method)
NoiseConfigurationController (class in tvb.interfaces.web.controllers.burst.noise_configuration_controller)
NoMemoryAvailableException
normalize_sensors() (tvb.adapters.visualizers.topographic.TopographyCalculations static method)
NORMALS_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute)
NotAllowed
NotAuthenticated
nullcline() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlane method)
NumericNode (class in tvb.basic.traits.itree_model)
numpy_add_at() (in module tvb.simulator.common)
(in module tvb.simulator.monitors)
(in module tvb.simulator.simulator)

O

ObjParser (class in tvb.adapters.uploaders.obj.parser)
ObjSurface (class in tvb.adapters.uploaders.obj.surface)
ObjSurfaceExporter (class in tvb.adapters.exporters.obj_export)
ObjSurfaceImporter (class in tvb.adapters.uploaders.obj_importer)
ObjWriter (class in tvb.adapters.uploaders.obj.parser)
OP_GID (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation attribute)
open_session() (tvb.core.entities.storage.session_maker.SessionsStack method)
OpenSurface (in module tvb.datatypes.surfaces)
Operation (in module tvb.core.entities.model.model_operation)
operation (tvb.basic.filters.chain.FilterChain attribute)
OPERATION_FOLDER_PREFIX (tvb.adapters.exporters.tvb_export.TVBExporter attribute)
operation_parent (tvb.core.entities.transient.graph_structures.GraphComponent attribute)
operation_replacement (tvb.basic.filters.chain.FilterChain attribute)
OperationDAO (class in tvb.core.entities.storage.operation_dao)
OperationException
OperationExecutor (class in tvb.core.services.backend_client)
OperationGroup (in module tvb.core.entities.model.model_operation)
OperationOverlayDetails (class in tvb.core.entities.transient.context_overlay)
OperationProcessIdentifier (in module tvb.core.entities.model.model_operation)
OperationService (class in tvb.core.services.operation_service)
OPERATORS (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
Option (class in tvb.basic.traits.itree_model)
order_number (tvb.basic.traits.core.TraitsInfo attribute)
ORIENTATION_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
OrientationArray (in module tvb.datatypes.arrays)
OTHER_COLOR (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute)
output_datatypes (tvb.core.entities.transient.graph_structures.GraphComponent attribute)
OverlayTabDefinition (class in tvb.interfaces.web.entities.context_overlay)
overwrites (tvb.core.model_validations.ModelValidator attribute)

P

PAGE_SIZE (tvb.adapters.visualizers.brain.BrainViewer attribute)
page_size (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute)
PARAM_FIGURE_SIZE (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute)
ParameterExplorationController (class in tvb.interfaces.web.controllers.burst.exploration_controller)
parameters_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
ParentsAndGrandParentsFinder() (in module tvb.adapters.creators.allen_creator)
parse() (tvb.adapters.uploaders.gifti.parser.GIFTIParser method)
(tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser method)
(tvb.adapters.uploaders.nifti.parser.NIFTIParser method)
parse_f() (tvb.adapters.uploaders.obj.parser.ObjParser method)
parse_json_parameters() (in module tvb.core.utils)
parse_slice() (in module tvb.basic.arguments_serialisation)
parse_v() (tvb.adapters.uploaders.obj.parser.ObjParser method)
parse_vn() (tvb.adapters.uploaders.obj.parser.ObjParser method)
parse_vt() (tvb.adapters.uploaders.obj.parser.ObjParser method)
parse_xml_content() (tvb.core.entities.file.files_helper.FilesHelper static method)
parse_xml_content_to_dict() (tvb.core.entities.file.xml_metadata_handlers.XMLReader method)
ParseException
ParticipationCoefficient (class in tvb.adapters.analyzers.bct_centrality_adapters)
ParticipationCoefficientSign (class in tvb.adapters.analyzers.bct_centrality_adapters)
path2url_part() (in module tvb.core.utils)
paths2url() (in module tvb.datatypes.surfaces)
(tvb.core.adapters.abcdisplayer.ABCDisplayer static method)
PCA (class in tvb.adapters.visualizers.pca)
(in module tvb.analyzers.pca)
PCAAdapter (class in tvb.adapters.analyzers.pca_adapter)
PearsonCorrelationCoefficientAdapter (class in tvb.adapters.analyzers.cross_correlation_adapter)
PearsonCorrelationCoefficientVisualizer (class in tvb.adapters.visualizers.pearson_cross_correlation)
PearsonEdgeBundle (class in tvb.adapters.visualizers.pearson_edge_bundle)
permutation (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityParser attribute)
persist_operation_state() (tvb.core.services.workflow_service.WorkflowService method)
phase_space_d3() (in module tvb.adapters.visualizers.phase_plane_interactive)
PhaseLineD3 (class in tvb.adapters.visualizers.phase_plane_interactive)
PhasePlane (class in tvb.adapters.visualizers.phase_plane_interactive)
PhasePlaneD3 (class in tvb.adapters.visualizers.phase_plane_interactive)
PhasePlaneInteractive (in module tvb.simulator.plot.phase_plane_interactive)
pmsCleaner() (in module tvb.adapters.creators.allen_creator)
point2json() (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method)
pop_message_from_session() (in module tvb.interfaces.web.controllers.common)
populate_burst_disk_usage() (tvb.core.services.burst_service.BurstService static method)
populate_option_values_for_dtype() (tvb.core.adapters.input_tree.InputTreeManager method)
(tvb.core.adapters.input_tree2.InputTreeManager method)
populate_surface_fields() (tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.brain.DualBrainViewer method)
Portlet (in module tvb.core.entities.model.model_workflow)
portlet_id (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute)
PORTLET_IDENT (tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation attribute)
portlet_tab_display() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
PortletConfiguration (class in tvb.core.entities.transient.burst_configuration_entities)
PortletConfigurer (class in tvb.core.portlets.portlet_configurer)
PortletWrapper (class in tvb.core.portlets.xml_reader)
PortValidator (class in tvb.interfaces.web.controllers.settings_controller)
pos (tvb.basic.traits.util.Args attribute)
PositionArray (in module tvb.datatypes.arrays)
postprocess_voxel_ts() (in module tvb.basic.arguments_serialisation)
PowerSpectraInteractive (in module tvb.simulator.plot.power_spectra_interactive)
pre_validators (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute)
(tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute)
(tvb.interfaces.web.controllers.project.project_controller.EditForm attribute)
(tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute)
(tvb.interfaces.web.controllers.users_controller.EditUserForm attribute)
(tvb.interfaces.web.controllers.users_controller.LoginForm attribute)
(tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute)
(tvb.interfaces.web.controllers.users_controller.RegisterForm attribute)
prefix_adapters_parameters() (tvb.core.portlets.portlet_configurer.PortletConfigurer method)
PREFIX_ID_LEAF (tvb.core.entities.transient.structure_entities.StructureNode attribute)
PREFIX_ID_NODE (tvb.core.entities.transient.structure_entities.StructureNode attribute)
PREFIX_ID_PROJECT (tvb.core.entities.transient.structure_entities.StructureNode attribute)
PREFIX_LEFT (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
PREFIX_RIGHT (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
PREFIX_TVB_ID (tvb.adapters.uploaders.brco.parser.XMLParser attribute)
prepare_adapter() (tvb.core.services.flow_service.FlowService method)
prepare_entity_interface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method)
prepare_for_json() (tvb.core.entities.transient.graph_structures.FullGraphStructure method)
prepare_for_operation_mode() (tvb.basic.config.profile_settings.BaseSettingsProfile method)
prepare_full_json() (tvb.core.entities.transient.pse.ContextDiscretePSE method)
prepare_group_launch() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
prepare_individual_jsons() (tvb.core.entities.transient.pse.ContextDiscretePSE method)
prepare_input_params_tree() (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser static method)
prepare_mapped_sensors_as_measure_points_params() (in module tvb.adapters.visualizers.sensors)
prepare_metrics_datatype() (tvb.core.entities.transient.pse.ContextDiscretePSE method)
prepare_next_step() (tvb.core.services.workflow_service.WorkflowService method)
prepare_node_data() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter static method)
prepare_operations() (tvb.core.services.operation_service.OperationService method)
prepare_operations_for_workflowsteps() (tvb.core.services.operation_service.OperationService method)
prepare_param_names() (tvb.core.adapters.input_tree.InputTreeManager static method)
(tvb.core.adapters.input_tree2.InputTreeManager static method)
prepare_parameters() (tvb.adapters.visualizers.histogram.HistogramViewer method)
(tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method)
prepare_range_labels() (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method)
prepare_sensors_as_measure_points_params() (in module tvb.adapters.visualizers.sensors)
prepare_shell_surface_urls() (in module tvb.adapters.visualizers.surface_view)
prepare_time_slice() (in module tvb.datatypes.time_series)
prepare_ui_inputs() (tvb.core.adapters.abcadapter.ABCAdapter method)
preprocess_space_parameters() (in module tvb.basic.arguments_serialisation)
preprocess_time_parameters() (in module tvb.basic.arguments_serialisation)
PreSigmoidal (in module tvb.simulator.coupling)
preview_page_size (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute)
PrincipalComponents (in module tvb.datatypes.mode_decompositions)
profile() (tvb.interfaces.web.controllers.users_controller.UserController method)
profile_func() (in module tvb.interfaces.web.controllers.decorators)
ProgressLogger (in module tvb.simulator.monitors)
Project (in module tvb.core.entities.model.model_project)
PROJECT_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
PROJECT_VERSION (tvb.basic.config.settings.VersionSettings attribute)
ProjectController (class in tvb.interfaces.web.controllers.project.project_controller)
ProjectImportException
Projection (in module tvb.simulator.monitors)
ProjectionMatrix (in module tvb.datatypes.projections)
ProjectionMatrixSurfaceEEGImporter (class in tvb.adapters.uploaders.projection_matrix_importer)
ProjectionSurfaceEEG (in module tvb.datatypes.projections)
ProjectionSurfaceMEG (in module tvb.datatypes.projections)
ProjectionSurfaceSEEG (in module tvb.datatypes.projections)
PROJECTS_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute)
PROJECTS_PAGE_SIZE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute)
ProjectService (class in tvb.core.services.project_service)
ProjectServiceException
ProjectUpdateManager (class in tvb.core.project_versions.project_update_manager)
projectupload() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
ProxyMetastabilitySynchrony (in module tvb.analyzers.metric_proxy_metastability)
PRROJECTS_FOR_LINK_KEY (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute)
PRROJECTS_LINKED_KEY (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute)
pse_error() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method)
PseIsoModel (class in tvb.adapters.visualizers.pse_isocline)
PsiTable (in module tvb.datatypes.lookup_tables)
PulseTrain (in module tvb.datatypes.equations)
PYTHON_INTERPRETER_PATH (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)

Q

query() (tvb.simulator.history.BaseHistory method)
(tvb.simulator.history.DenseHistory method)
(tvb.simulator.history.SparseHistory method)
query_sparse() (tvb.simulator.history.SparseHistory method)

R

RandomStream (in module tvb.simulator.noise)
Range (class in tvb.basic.traits.itree_model)
(in module tvb.basic.traits.types_basic)
range_interval (tvb.basic.traits.core.TraitsInfo attribute)
Raw (in module tvb.simulator.monitors)
raw (tvb.simulator.common.Buffer attribute)
read() (tvb.adapters.uploaders.obj.parser.ObjParser method)
read_annotation_terms() (tvb.adapters.uploaders.brco.parser.XMLParser method)
read_array() (tvb.basic.readers.FileReader method)
read_array_from_file() (tvb.basic.readers.ZipReader method)
read_binary_datatype_attribute() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
read_data() (tvb.adapters.uploaders.signals_importer.VHDR method)
read_datatype_attribute() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
read_field() (tvb.basic.readers.H5Reader method)
read_gain_from_brainstorm() (tvb.basic.readers.FileReader method)
read_h5() (in module tvb.interfaces.command.demos.datatypes.read_from_h5)
read_list_data() (tvb.adapters.uploaders.abcuploader.ABCUploader static method)
read_matlab_data() (tvb.adapters.uploaders.abcuploader.ABCUploader static method)
read_metadata() (tvb.core.entities.file.xml_metadata_handlers.XMLReader method)
read_nested_mat_file() (in module tvb.adapters.uploaders.mat.parser)
read_nested_mat_structure() (in module tvb.adapters.uploaders.mat.parser)
read_only (tvb.simulator.descriptors.NDArray attribute)
read_only_element() (tvb.core.entities.file.xml_metadata_handlers.XMLReader method)
read_optional_array_from_file() (tvb.basic.readers.ZipReader method)
read_optional_field() (tvb.basic.readers.H5Reader method)
read_project_metadata() (tvb.core.entities.file.files_helper.FilesHelper method)
ReaderException
readjsonstructure() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
readserverstaticfile() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
recoverpassword() (tvb.interfaces.web.controllers.users_controller.UserController method)
RecoveryForm (class in tvb.interfaces.web.controllers.users_controller)
ReducedSetBase (in module tvb.simulator.models.stefanescu_jirsa)
ReducedSetFitzHughNagumo (in module tvb.simulator.models.stefanescu_jirsa)
ReducedSetHindmarshRose (in module tvb.simulator.models.stefanescu_jirsa)
ReducedWongWang (in module tvb.simulator.models.wong_wang)
REGION_CORTICAL (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute)
RegionMapping (in module tvb.datatypes.region_mapping)
RegionMapping_Importer (class in tvb.adapters.uploaders.region_mapping_importer)
RegionMappingRemover (class in tvb.datatype_removers.remover_region_mapping)
RegionMappingViewer (class in tvb.adapters.visualizers.surface_view)
RegionsModelParametersController (class in tvb.interfaces.web.controllers.burst.region_model_parameters_controller)
RegionStimulusContext (class in tvb.core.entities.transient.context_stimulus)
RegionStimulusController (class in tvb.interfaces.web.controllers.spatial.region_stimulus_controller)
RegionStimulusCreator (class in tvb.adapters.creators.stimulus_creator)
RegionVolumeMapping (in module tvb.datatypes.region_mapping)
RegionVolumeMappingRemover (class in tvb.datatype_removers.remover_region_mapping)
RegionVolumeMappingVisualiser (class in tvb.adapters.visualizers.region_volume_mapping)
register() (tvb.interfaces.web.controllers.users_controller.UserController method)
REGISTERED_PROFILES (tvb.basic.profile.TvbProfile attribute)
RegisterForm (class in tvb.interfaces.web.controllers.users_controller)
RELEVANT_VIEW (tvb.core.entities.transient.filtering.StaticFiltersFactory attribute)
reload_burst_operation() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
reload_default() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
reloadoperation() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
remove_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
remove_datatype() (tvb.core.adapters.abcremover.ABCRemover method)
(tvb.core.entities.file.files_helper.FilesHelper method)
(tvb.core.entities.storage.root_dao.RootDAO method)
(tvb.core.services.project_service.ProjectService method)
(tvb.datatype_removers.remover_connectivity.ConnectivityRemover method)
(tvb.datatype_removers.remover_region_mapping.RegionMappingRemover method)
(tvb.datatype_removers.remover_sensor.SensorRemover method)
(tvb.datatype_removers.remover_surface.SurfaceRemover method)
(tvb.datatype_removers.remover_timeseries.TimeseriesRemover method)
(tvb.datatype_removers.remover_volume.VolumeRemover method)
remove_entity() (tvb.core.entities.storage.root_dao.RootDAO method)
remove_files() (tvb.core.entities.file.files_helper.FilesHelper static method)
remove_focal_point() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
(tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
remove_folder() (tvb.core.entities.file.files_helper.FilesHelper static method)
remove_from_session() (in module tvb.interfaces.web.controllers.common)
remove_image_metadata() (tvb.core.entities.file.files_helper.FilesHelper method)
remove_link() (tvb.core.services.flow_service.FlowService static method)
remove_mean() (in module tvb.analyzers.metric_proxy_metastability)
remove_metadata() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
remove_operation() (tvb.core.services.project_service.ProjectService method)
remove_operation_data() (tvb.core.entities.file.files_helper.FilesHelper method)
remove_project() (tvb.core.services.project_service.ProjectService method)
remove_project_structure() (tvb.core.entities.file.files_helper.FilesHelper method)
remove_result_figure() (tvb.core.services.figure_service.FigureService method)
remove_visualizer_references() (in module tvb.core.entities.model.db_update_scripts.010_update_db)
RemoveDataTypeException
removelink() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
rename_burst() (tvb.core.services.burst_service.BurstService static method)
(tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
rename_project_structure() (tvb.core.entities.file.files_helper.FilesHelper method)
RENDER_HTML (tvb.basic.config.settings.WebSettings attribute)
report() (tvb.interfaces.command.benchmark.Bench method)
RequestHandler (class in tvb.interfaces.web.request_handler)
required (tvb.basic.traits.core.TraitsInfo attribute)
reset() (in module tvb.core.services.initializer)
(tvb.core.entities.model.model_burst.TabConfiguration method)
(tvb.core.entities.transient.context_local_connectivity.ContextLocalConnectivity method)
(tvb.core.entities.transient.context_stimulus.RegionStimulusContext method)
(tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
reset_burst() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
reset_database() (in module tvb.core.entities.model_manager)
reset_equations_for_all_parameters() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
reset_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
reset_param_equation() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method)
reset_password() (tvb.core.services.user_service.UserService method)
reset_region_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
RESOLUTION_OPTIONS (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder attribute)
restricted_modules (tvb.basic.config.utils.LibraryModulesFinder attribute)
ResultFigure (in module tvb.core.entities.model.model_operation)
retrieve_all_users() (tvb.core.services.user_service.UserService static method)
retrieve_measure_points_prams() (tvb.adapters.visualizers.brain.BrainViewer method)
(tvb.adapters.visualizers.brain.DualBrainViewer method)
retrieve_project_full() (tvb.core.services.project_service.ProjectService method)
retrieve_projects_for_user() (tvb.core.services.project_service.ProjectService method)
retrieve_result_figures() (tvb.core.services.figure_service.FigureService method)
review_operation_inputs() (tvb.core.adapters.abcadapter.ABCAdapter method)
(tvb.core.adapters.input_tree.InputTreeManager method)
(tvb.core.adapters.input_tree2.InputTreeManager method)
RIGHT_SUFFIX_RE (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute)
rollback_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method)
ROOT_NODE_PATH (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute)
RootDAO (class in tvb.core.entities.storage.root_dao)
RotateReference() (in module tvb.adapters.creators.allen_creator)
run() (tvb.core.services.backend_client.OperationExecutor method)
(tvb.interfaces.command.benchmark.Bench method)
run_all_updates() (tvb.core.code_versions.base_classes.UpdateManager method)
(tvb.core.code_versions.code_update_manager.CodeUpdateManager method)
(tvb.core.entities.file.files_update_manager.FilesUpdateManager method)
(tvb.core.project_versions.project_update_manager.ProjectUpdateManager method)
run_export() (in module tvb.interfaces.command.demos.project.project_export)
run_import() (in module tvb.interfaces.command.demos.project.project_import)
run_update_script() (tvb.core.code_versions.base_classes.UpdateManager method)
(tvb.core.code_versions.code_update_manager.CodeUpdateManager method)
RungeKutta4thOrderDeterministic (in module tvb.simulator.integrators)

S

sampen() (in module tvb.analyzers.info)
save_measure_points_selection() (tvb.core.services.flow_service.FlowService static method)
save_parameters() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
save_project_to_user() (tvb.core.services.user_service.UserService static method)
save_pse_filter() (tvb.core.services.flow_service.FlowService static method)
save_settings() (tvb.core.services.settings_service.SettingsService method)
save_simulator_configuration() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)
Scaling (in module tvb.simulator.coupling)
SCHEDULE_COMMAND (tvb.basic.config.settings.ClusterSettings attribute)
scheme() (tvb.simulator.integrators.SciPyODE method)
(tvb.simulator.integrators.SciPySDE method)
SciPyODE (class in tvb.simulator.integrators)
SciPyODEBase (class in tvb.simulator.integrators)
SciPySDE (class in tvb.simulator.integrators)
search_and_export_ts() (in module tvb.interfaces.command.demos.datatypes.search_and_export)
SECTION_ANALYZE (tvb.interfaces.web.structure.WebStructure attribute)
SECTION_BURST (tvb.interfaces.web.structure.WebStructure attribute)
SECTION_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute)
SECTION_PROJECT (tvb.interfaces.web.structure.WebStructure attribute)
SECTION_STIMULUS (tvb.interfaces.web.structure.WebStructure attribute)
SECTION_USER (tvb.interfaces.web.structure.WebStructure attribute)
select_multiple (tvb.basic.traits.core.TraitsInfo attribute)
select_simulator_inputs() (tvb.core.adapters.input_tree.InputTreeManager static method)
(tvb.core.adapters.input_tree2.InputTreeManager static method)
selected (tvb.core.entities.transient.graph_structures.NodeStructure attribute)
SelectedAdapterContext (class in tvb.interfaces.web.entities.context_selected_adapter)
SelectTypeNode (class in tvb.basic.traits.itree_model)
send() (in module tvb.core.services.email_sender)
SensorRemover (class in tvb.datatype_removers.remover_sensor)
Sensors (in module tvb.datatypes.sensors)
Sensors_Importer (class in tvb.adapters.uploaders.sensors_importer)
SensorsEEG (in module tvb.datatypes.sensors)
SensorsInternal (in module tvb.datatypes.sensors)
SensorsMEG (in module tvb.datatypes.sensors)
SensorsTSBase (in module tvb.datatypes.time_series)
SensorsViewer (class in tvb.adapters.visualizers.sensors)
SEP (tvb.core.entities.transient.structure_entities.StructureNode attribute)
Sequence (in module tvb.basic.traits.types_basic)
sequential_random_deletion() (in module tvb.analyzers.graph)
sequential_targeted_deletion() (in module tvb.analyzers.graph)
SerializationManager (class in tvb.core.services.burst_config_serialization)
ServicesBaseException
session (tvb.core.entities.storage.DAO attribute)
(tvb.core.entities.storage.datatype_dao.DatatypeDAO attribute)
(tvb.core.entities.storage.operation_dao.OperationDAO attribute)
(tvb.core.entities.storage.project_dao.CaseDAO attribute)
(tvb.core.entities.storage.root_dao.RootDAO attribute)
(tvb.core.entities.storage.workflow_dao.WorkflowDAO attribute)
SESSION_KEY (tvb.interfaces.web.controllers.burst.dynamic_model_controller.SessionCache attribute)
SESSION_META_CLASS (in module tvb.core.entities.storage.session_maker)
SessionCache (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller)
SessionMaker() (in module tvb.core.entities.storage.session_maker)
SessionsStack (class in tvb.core.entities.storage.session_maker)
Set (in module tvb.basic.traits.types_basic)
set_active_stimulus() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method)
(tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
set_algorithm() (tvb.core.entities.transient.burst_export_entities.StepInfo method)
set_analyzers() (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration method)
set_datatype_visibility() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
(tvb.core.services.project_service.ProjectService static method)
set_dynamic_step_references() (tvb.core.services.workflow_service.WorkflowService static method)
set_error_message() (in module tvb.interfaces.web.controllers.common)
set_focal_points() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
set_important_message() (in module tvb.interfaces.web.controllers.common)
set_info_message() (in module tvb.interfaces.web.controllers.common)
set_loggers_level() (tvb.basic.logger.builder.LoggerBuilder method)
set_message() (in module tvb.interfaces.web.controllers.common)
set_metadata() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
set_operation() (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation method)
set_operation_and_group_visibility() (tvb.core.entities.storage.operation_dao.OperationDAO method)
(tvb.core.services.project_service.ProjectService method)
set_portlet() (tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation method)
set_profile() (tvb.basic.profile.TvbProfile class method)
set_project_structure_grouping() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
set_view_steps() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
set_viewer_color_scheme() (tvb.interfaces.web.controllers.users_controller.UserController method)
set_visibility() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
set_visualizer() (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration method)
set_warning_message() (in module tvb.interfaces.web.controllers.common)
set_weights() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method)
set_workflow_steps() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
set_workflows() (tvb.core.entities.transient.burst_export_entities.BurstInformation method)
setRanges() (tvb.core.entities.transient.pse.ContextDiscretePSE method)
settings() (in module tvb.interfaces.web.controllers.decorators)
(tvb.interfaces.web.controllers.settings_controller.SettingsController method)
SettingsController (class in tvb.interfaces.web.controllers.settings_controller)
SettingsForm (class in tvb.interfaces.web.controllers.settings_controller)
SettingsManager (class in tvb.basic.config.stored)
SettingsService (class in tvb.core.services.settings_service)
setup_python_path() (tvb.basic.config.environment.Environment method)
setup_tk_tcl_environ() (tvb.basic.config.environment.Environment method)
shape (tvb.simulator.descriptors.NDArray attribute)
shape_color (tvb.core.entities.transient.graph_structures.NodeData attribute)
shape_size (tvb.core.entities.transient.graph_structures.NodeData attribute)
shape_type (tvb.core.entities.transient.graph_structures.NodeData attribute)
show_confirmation_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
show_group_of_algorithms() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
showBlockerOverlay() (tvb.interfaces.web.controllers.base_controller.BaseController method)
showOnlineHelp() (tvb.interfaces.web.controllers.help.help_controller.HelpController method)
Sigmoid (in module tvb.datatypes.equations)
Sigmoidal (in module tvb.simulator.coupling)
SigmoidalJansenRit (in module tvb.simulator.coupling)
simple_gen_astr() (in module tvb.simulator.common)
SimpleTimedRotatingFileHandler (class in tvb.basic.logger.simple_handler)
SimulationState (in module tvb.datatypes.simulation_state)
Simulator (in module tvb.simulator.simulator)
SimulatorAdapter (class in tvb.adapters.simulator.simulator_adapter)
singleton() (in module tvb.core.entities.storage.session_maker)
Sinusoid (in module tvb.datatypes.equations)
SkinAir (in module tvb.datatypes.surfaces)
SkullSkin (in module tvb.datatypes.surfaces)
Slice (in module tvb.basic.traits.types_basic)
slice_str() (in module tvb.basic.arguments_serialisation)
SparseCoupling (in module tvb.simulator.coupling)
SparseHistory (class in tvb.simulator.history)
SparseMatrix (in module tvb.basic.traits.types_mapped_light)
(in module tvb.core.traits.types_mapped)
SpatialApplicableEquation (in module tvb.datatypes.equations)
SpatialAverage (in module tvb.simulator.monitors)
SpatialPattern (in module tvb.datatypes.patterns)
SpatialPatternVolume (in module tvb.datatypes.patterns)
SpatioTemporalCall (class in tvb.datatypes.patterns)
SpatioTemporalController (class in tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller)
SpatioTemporalPattern (in module tvb.datatypes.patterns)
spectral_dbscan() (in module tvb.analyzers.fcd_matrix)
spectral_embedding() (in module tvb.analyzers.fcd_matrix)
StandAloneClient (class in tvb.core.services.backend_client)
start_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method)
start_tvb() (in module tvb.interfaces.web.run)
STATES (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
STATIC_ACCEPTED_TYPES (tvb.core.adapters.abcadapter.ABCAdapter attribute)
StaticAttr (class in tvb.simulator.descriptors)
StaticFiltersFactory (class in tvb.core.entities.transient.filtering)
STATUS (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute)
STATUS_COMMAND (tvb.basic.config.settings.ClusterSettings attribute)
step (tvb.simulator.common.Buffer attribute)
step_1() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
(tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
step_1_submit() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
step_2() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method)
(tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
step_2_submit() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
(tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
step_analyzers() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
step_connectivity() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
STEP_INDEX_KEY (tvb.core.entities.transient.burst_configuration_entities.WorkflowStepConfiguration attribute)
StepInfo (class in tvb.core.entities.transient.burst_export_entities)
StimuliRegion (in module tvb.datatypes.patterns)
StimuliSurface (in module tvb.datatypes.patterns)
STIMULUS_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
stop() (tvb.core.services.backend_client.OperationExecutor method)
stop_burst() (tvb.core.services.burst_service.BurstService method)
stop_burst_operation() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
STOP_COMMAND (tvb.basic.config.settings.ClusterSettings attribute)
stop_operation() (tvb.core.services.backend_client.ClusterSchedulerClient static method)
(tvb.core.services.backend_client.StandAloneClient static method)
(tvb.core.services.operation_service.OperationService method)
(tvb.interfaces.web.controllers.flow_controller.FlowController method)
stop_pid() (tvb.core.services.backend_client.OperationExecutor static method)
stopped() (tvb.core.services.backend_client.OperationExecutor method)
StorageException
store_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method)
store_datatype() (tvb.core.services.import_service.ImportService method)
store_entities() (tvb.core.entities.storage.root_dao.RootDAO method)
store_entity() (tvb.core.entities.storage.root_dao.RootDAO method)
store_exploration_section() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
store_list_data() (in module tvb.core.utils)
store_measure_points_selection() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
store_project() (tvb.core.services.project_service.ProjectService method)
store_pse_filter() (tvb.interfaces.web.controllers.flow_controller.FlowController method)
store_result_figure() (tvb.core.services.figure_service.FigureService method)
store_workflow_step() (tvb.core.services.workflow_service.WorkflowService static method)
stored_adapter (tvb.core.adapters.abcadapter.ABCAdapter attribute)
stored_metadata (tvb.basic.traits.core.TraitsInfo attribute)
StoredPSEFilter (in module tvb.core.entities.model.model_datatype)
storeresultfigure() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method)
str_class_name() (in module tvb.basic.traits.util)
Strength (class in tvb.adapters.analyzers.bct_degree_adapters)
StrengthISOS (class in tvb.adapters.analyzers.bct_degree_adapters)
StrengthWeights (class in tvb.adapters.analyzers.bct_degree_adapters)
String (in module tvb.basic.traits.types_basic)
string2array() (in module tvb.core.utils)
string2bool() (in module tvb.core.utils)
string2date() (in module tvb.core.utils)
StringArray (in module tvb.datatypes.arrays)
Struct (class in tvb.simulator.common)
StructuralMRI (in module tvb.datatypes.structural)
StructureException
StructureNode (class in tvb.core.entities.transient.structure_entities)
SUB_SECTION_ACCOUNT (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ALLEN (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_1 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_10 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_11 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_12 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_13 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_14 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_15 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_16 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_17 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_18 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_2 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_3 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_4 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_5 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_6 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_7 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_8 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_9 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_ANALYZE_MENU (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_BURST (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_CONNECTIVITY_MENU (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_DATA_STRUCTURE (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_FIGURES (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_LIST_PROJECTS (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_LOCAL_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_LOGIN (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_MODEL_REGIONS (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_MODEL_SURFACE (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_NOISE_CONFIGURATION (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_OPERATIONS (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_PHASE_PLANE (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_PROJECT_MENU (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_PROPERTIES_PROJECT (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_STIMULUS_MENU (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_STIMULUS_REGION (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_STIMULUS_SURFACE (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_0 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_1 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_10 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_11 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_12 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_13 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_14 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_15 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_16 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_17 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_18 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_19 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_2 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_20 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_21 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_22 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_23 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_24 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_25 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_3 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_4 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_5 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_6 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_7 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_8 (tvb.interfaces.web.structure.WebStructure attribute)
SUB_SECTION_VIEW_9 (tvb.interfaces.web.structure.WebStructure attribute)
subclasses() (tvb.basic.traits.util.TypeRegister method)
SubgraphCentrality (class in tvb.adapters.analyzers.bct_centrality_adapters)
subject (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)
SUBJECT_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
submit() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
(tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController method)
submit_model_parameters() (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method)
(tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method)
SubSample (in module tvb.simulator.monitors)
summary() (tvb.datatypes.surfaces.ValidationResult method)
Surface (in module tvb.datatypes.surfaces)
SurfaceContextModelParameters (class in tvb.interfaces.web.entities.context_model_parameters)
SurfaceModelParametersController (class in tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller)
SurfaceRemover (class in tvb.datatype_removers.remover_surface)
SurfaceStimulusContext (class in tvb.core.entities.transient.context_stimulus)
SurfaceStimulusController (class in tvb.interfaces.web.controllers.spatial.surface_stimulus_controller)
SurfaceStimulusCreator (class in tvb.adapters.creators.stimulus_creator)
SurfaceVerticesNrValidator (class in tvb.interfaces.web.controllers.settings_controller)
SurfaceViewer (class in tvb.adapters.visualizers.surface_view)
SVN_VERSION (tvb.basic.config.settings.VersionSettings attribute)
(tvb.config.profile_settings.TestSQLiteProfile attribute)
switch_online_help() (tvb.interfaces.web.controllers.users_controller.UserController method)
synchronized() (in module tvb.core.decorators)
SYSTEM_USER_NAME (tvb.basic.config.settings.WebAdminSettings attribute)

T

TabConfiguration (class in tvb.core.entities.model.model_burst)
TEMP_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute)
TemporalApplicableEquation (in module tvb.datatypes.equations)
TemporalAverage (in module tvb.simulator.monitors)
TEST_LIBRARY_PROFILE (tvb.basic.profile.TvbProfile attribute)
TEST_POSTGRES_PROFILE (tvb.basic.profile.TvbProfile attribute)
TEST_SQLITE_PROFILE (tvb.basic.profile.TvbProfile attribute)
TestLibraryProfile (class in tvb.basic.config.profile_settings)
TestPostgresProfile (class in tvb.config.profile_settings)
TestSQLiteProfile (class in tvb.config.profile_settings)
ThreadNrValidator (class in tvb.interfaces.web.controllers.settings_controller)
TIME_STEP_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
time_stride (tvb.simulator.history.SparseHistory attribute)
TimeSeries (class in tvb.adapters.visualizers.time_series)
(in module tvb.datatypes.time_series)
TimeSeriesEEG (in module tvb.datatypes.time_series)
TimeSeriesInteractive (in module tvb.simulator.plot.timeseries_interactive)
TimeSeriesMEG (in module tvb.datatypes.time_series)
TimeseriesMetricsAdapter (class in tvb.adapters.analyzers.metrics_group_timeseries)
TimeSeriesRegion (in module tvb.datatypes.time_series)
TimeseriesRemover (class in tvb.datatype_removers.remover_timeseries)
TimeSeriesSEEG (in module tvb.datatypes.time_series)
TimeSeriesSurface (in module tvb.datatypes.time_series)
TimeSeriesVolume (in module tvb.datatypes.time_series)
TimeSeriesVolumeVisualiser (class in tvb.adapters.visualizers.time_series_volume)
to_dict() (tvb.basic.filters.chain.UIFilter method)
(tvb.core.entities.exportable.Exportable method)
(tvb.core.entities.transient.burst_export_entities.BurstInformation method)
(tvb.core.entities.transient.burst_export_entities.StepInfo method)
(tvb.core.entities.transient.burst_export_entities.WorkflowInformation method)
(tvb.core.portlets.xml_reader.PortletWrapper method)
to_json() (tvb.basic.filters.chain.FilterChain method)
(tvb.core.entities.transient.graph_structures.NodeData method)
(tvb.core.entities.transient.graph_structures.NodeStructure method)
(tvb.datatypes.annotations.AnnotationTerm method)
to_tuple() (tvb.datatypes.annotations.AnnotationTerm method)
TopographicViewer (class in tvb.adapters.visualizers.topographic)
TopographyCalculations (class in tvb.adapters.visualizers.topographic)
total_ms() (in module tvb.simulator.common)
TrackvizTractsImporter (class in tvb.adapters.uploaders.tract_importer)
TRACT_FILE (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute)
TRACT_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
Tracts (in module tvb.datatypes.tracts)
TractViewer (class in tvb.adapters.visualizers.tract)
TRADE_CRASH_SAFETY_FOR_SPEED (tvb.config.profile_settings.TestSQLiteProfile attribute)
TraitedInterfaceGenerator (class in tvb.basic.traits.traited_interface)
TraitedInterfaceGeneratorExperimental (class in tvb.basic.traits.traited_interface2)
TraitsInfo (class in tvb.basic.traits.core)
trajectories() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method)
(tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)
transactional() (in module tvb.core.entities.storage.session_maker)
TransitivityBinaryDirected (class in tvb.adapters.analyzers.bct_clustering_adapters)
TransitivityBinaryUnDirected (class in tvb.adapters.analyzers.bct_clustering_adapters)
TransitivityWeightedDirected (class in tvb.adapters.analyzers.bct_clustering_adapters)
TransitivityWeightedUnDirected (class in tvb.adapters.analyzers.bct_clustering_adapters)
TRIANGLES_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute)
try_get_absolute_path() (in module tvb.basic.readers)
try_get_operation_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method)
try_load_last_entity_of_type() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method)
try_parse() (in module tvb.basic.traits.parameters_factory)
ts_builder (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter attribute)
TS_EEG (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter attribute)
TS_REGION (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter attribute)
Tuple (in module tvb.basic.traits.types_basic)
tvb() (tvb.interfaces.web.controllers.base_controller.BaseController method)
tvb.__init__ (module)
tvb.adapters.analyzers (module)
tvb.adapters.analyzers.bct_adapters (module)
tvb.adapters.analyzers.bct_centrality_adapters (module)
tvb.adapters.analyzers.bct_clustering_adapters (module)
tvb.adapters.analyzers.bct_degree_adapters (module)
tvb.adapters.analyzers.cross_correlation_adapter (module)
tvb.adapters.analyzers.fcd_adapter (module)
tvb.adapters.analyzers.fmri_balloon_adapter (module)
tvb.adapters.analyzers.fourier_adapter (module)
tvb.adapters.analyzers.ica_adapter (module)
tvb.adapters.analyzers.matlab_worker (module)
tvb.adapters.analyzers.metrics_group_timeseries (module)
tvb.adapters.analyzers.node_coherence_adapter (module)
tvb.adapters.analyzers.node_complex_coherence_adapter (module)
tvb.adapters.analyzers.node_covariance_adapter (module)
tvb.adapters.analyzers.pca_adapter (module)
tvb.adapters.analyzers.wavelet_adapter (module)
tvb.adapters.creators (module)
tvb.adapters.creators.allen_creator (module)
tvb.adapters.creators.connectivity_creator (module)
tvb.adapters.creators.local_connectivity_creator (module)
tvb.adapters.creators.stimulus_creator (module)
tvb.adapters.exporters.abcexporter (module)
tvb.adapters.exporters.exceptions (module)
tvb.adapters.exporters.export_manager (module)
tvb.adapters.exporters.obj_export (module)
tvb.adapters.exporters.tvb_export (module)
tvb.adapters.simulator (module)
tvb.adapters.simulator.simulator_adapter (module)
tvb.adapters.uploaders (module)
tvb.adapters.uploaders.abcuploader (module)
tvb.adapters.uploaders.brco.parser (module)
tvb.adapters.uploaders.brco_importer (module)
tvb.adapters.uploaders.cff_importer (module)
tvb.adapters.uploaders.connectivity_measure_importer (module)
tvb.adapters.uploaders.csv_connectivity_importer (module)
tvb.adapters.uploaders.fieldtrip_importer (module)
tvb.adapters.uploaders.gifti.parser (module)
tvb.adapters.uploaders.gifti_surface_importer (module)
tvb.adapters.uploaders.gifti_timeseries_importer (module)
tvb.adapters.uploaders.mat.parser (module)
tvb.adapters.uploaders.mat_timeseries_importer (module)
tvb.adapters.uploaders.networkx_connectivity.parser (module)
tvb.adapters.uploaders.networkx_importer (module)
tvb.adapters.uploaders.nifti.parser (module)
tvb.adapters.uploaders.nifti_importer (module)
tvb.adapters.uploaders.obj.parser (module)
tvb.adapters.uploaders.obj.surface (module)
tvb.adapters.uploaders.obj_importer (module)
tvb.adapters.uploaders.projection_matrix_importer (module)
tvb.adapters.uploaders.region_mapping_importer (module)
tvb.adapters.uploaders.sensors_importer (module)
tvb.adapters.uploaders.signals_importer (module)
tvb.adapters.uploaders.tract_importer (module)
tvb.adapters.uploaders.tvb_importer (module)
tvb.adapters.uploaders.zip_connectivity_importer (module)
tvb.adapters.uploaders.zip_surface.parser (module)
tvb.adapters.uploaders.zip_surface_importer (module)
tvb.adapters.visualizers (module)
tvb.adapters.visualizers.annotations_viewer (module)
tvb.adapters.visualizers.brain (module)
tvb.adapters.visualizers.complex_imaginary_coherence (module)
tvb.adapters.visualizers.connectivity (module)
tvb.adapters.visualizers.connectivity_edge_bundle (module)
tvb.adapters.visualizers.covariance (module)
tvb.adapters.visualizers.cross_coherence (module)
tvb.adapters.visualizers.cross_correlation (module)
tvb.adapters.visualizers.eeg_monitor (module)
tvb.adapters.visualizers.fourier_spectrum (module)
tvb.adapters.visualizers.histogram (module)
tvb.adapters.visualizers.ica (module)
tvb.adapters.visualizers.local_connectivity_view (module)
tvb.adapters.visualizers.matrix_viewer (module)
tvb.adapters.visualizers.pca (module)
tvb.adapters.visualizers.pearson_cross_correlation (module)
tvb.adapters.visualizers.pearson_edge_bundle (module)
tvb.adapters.visualizers.phase_plane_interactive (module)
tvb.adapters.visualizers.pse_discrete (module)
tvb.adapters.visualizers.pse_isocline (module)
tvb.adapters.visualizers.region_volume_mapping (module)
tvb.adapters.visualizers.sensors (module)
tvb.adapters.visualizers.surface_view (module)
tvb.adapters.visualizers.time_series (module)
tvb.adapters.visualizers.time_series_volume (module)
tvb.adapters.visualizers.topographic (module)
tvb.adapters.visualizers.tract (module)
tvb.adapters.visualizers.wavelet_spectrogram (module)
tvb.analyzers.correlation_coefficient (module)
tvb.analyzers.cross_correlation (module)
tvb.analyzers.fcd_matrix (module)
tvb.analyzers.fft (module)
tvb.analyzers.fmri_balloon (module)
tvb.analyzers.graph (module)
tvb.analyzers.ica (module)
tvb.analyzers.info (module)
tvb.analyzers.metric_kuramoto_index (module)
tvb.analyzers.metric_proxy_metastability (module)
tvb.analyzers.metric_variance_global (module)
tvb.analyzers.metric_variance_of_node_variance (module)
tvb.analyzers.metrics_base (module)
tvb.analyzers.node_coherence (module)
tvb.analyzers.node_complex_coherence (module)
tvb.analyzers.node_covariance (module)
tvb.analyzers.pca (module)
tvb.analyzers.wavelet (module)
tvb.basic (module)
tvb.basic.arguments_serialisation (module)
tvb.basic.config.environment (module)
tvb.basic.config.profile_settings (module)
tvb.basic.config.settings (module)
tvb.basic.config.stored (module)
tvb.basic.config.utils (module)
tvb.basic.filters.chain (module)
tvb.basic.filters.exceptions (module)
tvb.basic.logger.builder (module)
tvb.basic.logger.simple_handler (module)
tvb.basic.profile (module)
tvb.basic.readers (module)
tvb.basic.traits (module)
tvb.basic.traits.core (module)
tvb.basic.traits.exceptions (module)
tvb.basic.traits.itree_model (module)
tvb.basic.traits.parameters_factory (module)
tvb.basic.traits.traited_interface (module)
tvb.basic.traits.traited_interface2 (module)
tvb.basic.traits.types_basic (module)
tvb.basic.traits.types_mapped (module)
tvb.basic.traits.types_mapped_light (module)
tvb.basic.traits.util (module)
tvb.config (module)
tvb.config.logger.cluster_handler (module)
tvb.config.profile_settings (module)
tvb.core (module)
tvb.core.adapters.abcadapter (module)
tvb.core.adapters.abcdisplayer (module)
tvb.core.adapters.abcremover (module)
tvb.core.adapters.constants (module)
tvb.core.adapters.exceptions (module)
tvb.core.adapters.input_tree (module)
tvb.core.adapters.input_tree2 (module)
tvb.core.adapters.introspector (module)
tvb.core.code_versions (module)
tvb.core.code_versions.base_classes (module)
tvb.core.code_versions.code_update_manager (module)
tvb.core.code_versions.code_update_scripts (module)
tvb.core.code_versions.code_update_scripts.4455_update_code (module)
tvb.core.code_versions.code_update_scripts.4750_update_code (module)
tvb.core.code_versions.code_update_scripts.5454_update_code (module)
tvb.core.code_versions.code_update_scripts.6093_update_code (module)
tvb.core.code_versions.code_update_scripts.6600_update_code (module)
tvb.core.code_versions.code_update_scripts.6728_update_code (module)
tvb.core.code_versions.code_update_scripts.7350_update_code (module)
tvb.core.code_versions.code_update_scripts.7450_update_code (module)
tvb.core.decorators (module)
tvb.core.entities.exportable (module)
tvb.core.entities.file.exceptions (module)
tvb.core.entities.file.file_update_scripts (module)
tvb.core.entities.file.file_update_scripts.002_update_files (module)
tvb.core.entities.file.file_update_scripts.003_update_files (module)
tvb.core.entities.file.file_update_scripts.004_update_files (module)
tvb.core.entities.file.files_helper (module)
tvb.core.entities.file.files_update_manager (module)
tvb.core.entities.file.hdf5_storage_manager (module)
tvb.core.entities.file.xml_metadata_handlers (module)
tvb.core.entities.load (module)
tvb.core.entities.model (module)
tvb.core.entities.model.db_update_scripts (module)
tvb.core.entities.model.db_update_scripts.001_update_db (module)
tvb.core.entities.model.db_update_scripts.002_update_db (module)
tvb.core.entities.model.db_update_scripts.003_update_db (module)
tvb.core.entities.model.db_update_scripts.004_update_db (module)
tvb.core.entities.model.db_update_scripts.005_update_db (module)
tvb.core.entities.model.db_update_scripts.006_update_db (module)
tvb.core.entities.model.db_update_scripts.007_update_db (module)
tvb.core.entities.model.db_update_scripts.008_update_db (module)
tvb.core.entities.model.db_update_scripts.009_update_db (module)
tvb.core.entities.model.db_update_scripts.010_update_db (module)
tvb.core.entities.model.db_update_scripts.011_update_db (module)
tvb.core.entities.model.db_update_scripts.012_update_db (module)
tvb.core.entities.model.db_update_scripts.013_update_db (module)
tvb.core.entities.model.db_update_scripts.014_update_db (module)
tvb.core.entities.model.db_update_scripts.015_update_db (module)
tvb.core.entities.model.db_update_scripts.016_update_db (module)
tvb.core.entities.model.db_update_scripts.017_update_db (module)
tvb.core.entities.model.db_update_scripts.helper (module)
tvb.core.entities.model.model_base (module)
tvb.core.entities.model.model_burst (module)
tvb.core.entities.model.model_datatype (module)
tvb.core.entities.model.model_operation (module)
tvb.core.entities.model.model_project (module)
tvb.core.entities.model.model_workflow (module)
tvb.core.entities.model_manager (module)
tvb.core.entities.storage (module)
tvb.core.entities.storage.datatype_dao (module)
tvb.core.entities.storage.exceptions (module)
tvb.core.entities.storage.operation_dao (module)
tvb.core.entities.storage.project_dao (module)
tvb.core.entities.storage.root_dao (module)
tvb.core.entities.storage.session_maker (module)
tvb.core.entities.storage.workflow_dao (module)
tvb.core.entities.transient (module)
tvb.core.entities.transient.burst_configuration_entities (module)
tvb.core.entities.transient.burst_export_entities (module)
tvb.core.entities.transient.context_local_connectivity (module)
tvb.core.entities.transient.context_overlay (module)
tvb.core.entities.transient.context_stimulus (module)
tvb.core.entities.transient.filtering (module)
tvb.core.entities.transient.graph_structures (module)
tvb.core.entities.transient.pse (module)
tvb.core.entities.transient.structure_entities (module)
tvb.core.model_validations (module)
tvb.core.operation_async_launcher (module)
tvb.core.portlets.portlet_configurer (module)
tvb.core.portlets.xml_reader (module)
tvb.core.project_versions (module)
tvb.core.project_versions.project_update_manager (module)
tvb.core.project_versions.project_update_scripts (module)
tvb.core.project_versions.project_update_scripts.1_update_project (module)
tvb.core.project_versions.project_update_scripts.2_update_project (module)
tvb.core.removers_factory (module)
tvb.core.services (module)
tvb.core.services.backend_client (module)
tvb.core.services.burst_config_serialization (module)
tvb.core.services.burst_service (module)
tvb.core.services.email_sender (module)
tvb.core.services.exceptions (module)
tvb.core.services.figure_service (module)
tvb.core.services.flow_service (module)
tvb.core.services.import_service (module)
tvb.core.services.initializer (module)
tvb.core.services.operation_service (module)
tvb.core.services.project_service (module)
tvb.core.services.settings_service (module)
tvb.core.services.texture_to_json (module)
tvb.core.services.user_service (module)
tvb.core.services.workflow_service (module)
tvb.core.traits.core (module)
tvb.core.traits.db_events (module)
tvb.core.traits.sql_mapping (module)
tvb.core.traits.types_mapped (module)
tvb.core.utils (module)
tvb.datatype_removers (module)
tvb.datatype_removers.remover_connectivity (module)
tvb.datatype_removers.remover_region_mapping (module)
tvb.datatype_removers.remover_sensor (module)
tvb.datatype_removers.remover_surface (module)
tvb.datatype_removers.remover_timeseries (module)
tvb.datatype_removers.remover_volume (module)
tvb.datatypes (module)
tvb.datatypes.annotations (module)
tvb.datatypes.arrays (module)
tvb.datatypes.connectivity (module)
tvb.datatypes.cortex (module)
tvb.datatypes.equations (module)
tvb.datatypes.fcd (module)
tvb.datatypes.graph (module)
tvb.datatypes.local_connectivity (module)
tvb.datatypes.lookup_tables (module)
tvb.datatypes.mapped_values (module)
tvb.datatypes.mode_decompositions (module)
tvb.datatypes.noise_framework (module)
tvb.datatypes.patterns (module)
tvb.datatypes.projections (module)
tvb.datatypes.region_mapping (module)
tvb.datatypes.sensors (module)
tvb.datatypes.sensors_bst_to_tvb (module)
tvb.datatypes.simulation_state (module)
tvb.datatypes.spectral (module)
tvb.datatypes.structural (module)
tvb.datatypes.surfaces (module)
tvb.datatypes.temporal_correlations (module)
tvb.datatypes.time_series (module)
tvb.datatypes.tracts (module)
tvb.datatypes.volumes (module)
tvb.interfaces (module)
tvb.interfaces.command.benchmark (module)
tvb.interfaces.command.demos.datatypes.modify_h5_metadata (module)
tvb.interfaces.command.demos.datatypes.read_from_h5 (module)
tvb.interfaces.command.demos.datatypes.search_and_export (module)
tvb.interfaces.command.demos.importers.h5_import (module)
tvb.interfaces.command.demos.importers.new_importer (module)
tvb.interfaces.command.demos.importers.new_importer_launcher (module)
tvb.interfaces.command.demos.operations.run_analyzer (module)
tvb.interfaces.command.demos.operations.run_simulation (module)
tvb.interfaces.command.demos.operations.run_workflow (module)
tvb.interfaces.command.demos.project.project_export (module)
tvb.interfaces.command.demos.project.project_import (module)
tvb.interfaces.command.lab (module)
tvb.interfaces.web.controllers.base_controller (module)
tvb.interfaces.web.controllers.burst.base_controller (module)
tvb.interfaces.web.controllers.burst.burst_controller (module)
tvb.interfaces.web.controllers.burst.dynamic_model_controller (module)
tvb.interfaces.web.controllers.burst.exploration_controller (module)
tvb.interfaces.web.controllers.burst.noise_configuration_controller (module)
tvb.interfaces.web.controllers.burst.region_model_parameters_controller (module)
tvb.interfaces.web.controllers.common (module)
tvb.interfaces.web.controllers.decorators (module)
tvb.interfaces.web.controllers.flow_controller (module)
tvb.interfaces.web.controllers.help.help_config (module)
tvb.interfaces.web.controllers.help.help_controller (module)
tvb.interfaces.web.controllers.project.figure_controller (module)
tvb.interfaces.web.controllers.project.project_controller (module)
tvb.interfaces.web.controllers.settings_controller (module)
tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller (module)
tvb.interfaces.web.controllers.spatial.local_connectivity_controller (module)
tvb.interfaces.web.controllers.spatial.region_stimulus_controller (module)
tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller (module)
tvb.interfaces.web.controllers.spatial.surface_stimulus_controller (module)
tvb.interfaces.web.controllers.users_controller (module)
tvb.interfaces.web.entities.context_model_parameters (module)
tvb.interfaces.web.entities.context_overlay (module)
tvb.interfaces.web.entities.context_selected_adapter (module)
tvb.interfaces.web.request_handler (module)
tvb.interfaces.web.run (module)
tvb.interfaces.web.structure (module)
tvb.simulator.common (module)
tvb.simulator.coupling (module)
tvb.simulator.descriptors (module)
tvb.simulator.history (module)
tvb.simulator.integrators (module)
tvb.simulator.models (module)
tvb.simulator.models.base (module)
tvb.simulator.models.epileptor (module)
tvb.simulator.models.hopfield (module)
tvb.simulator.models.jansen_rit (module)
tvb.simulator.models.larter_breakspear (module)
tvb.simulator.models.linear (module)
tvb.simulator.models.oscillator (module)
tvb.simulator.models.stefanescu_jirsa (module)
tvb.simulator.models.wilson_cowan (module)
tvb.simulator.models.wong_wang (module)
tvb.simulator.monitors (module)
tvb.simulator.noise (module)
tvb.simulator.plot.phase_plane_interactive (module)
tvb.simulator.plot.power_spectra_interactive (module)
tvb.simulator.plot.timeseries_interactive (module)
tvb.simulator.simulator (module)
TVB_ATTRIBUTE_PREFIX (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute)
TVB_CONFIG_FILE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
(tvb.config.profile_settings.TestSQLiteProfile attribute)
TVB_FILE_EXTENSION (tvb.core.entities.file.files_helper.FilesHelper attribute)
TVB_OPERARATION_FILE (tvb.core.entities.file.files_helper.FilesHelper attribute)
TVB_PROJECT_FILE (tvb.core.entities.file.files_helper.FilesHelper attribute)
TVB_STORAGE (tvb.basic.config.profile_settings.LibrarySettingsProfile attribute)
TVB_STORAGE_FILE_EXTENSION (tvb.core.entities.file.files_helper.FilesHelper attribute)
TVB_USER_HOME (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)
TVBException
TVBExporter (class in tvb.adapters.exporters.tvb_export)
TVBImporter (class in tvb.adapters.uploaders.tvb_importer)
TVBJSONEncoder (class in tvb.core.utils)
TvbProfile (class in tvb.basic.profile)
TvbZip (class in tvb.core.entities.file.files_helper)
Type (in module tvb.basic.traits.core)
type (tvb.core.entities.transient.structure_entities.StructureNode attribute)
TYPE_FILE (tvb.core.entities.transient.structure_entities.StructureNode attribute)
TYPE_FOLDER (tvb.core.entities.transient.structure_entities.StructureNode attribute)
TYPE_INVALID (tvb.core.entities.transient.structure_entities.StructureNode attribute)
TYPE_MULTIPLE (tvb.core.adapters.abcadapter.ABCAdapter attribute)
TYPE_SELECT (tvb.core.adapters.abcadapter.ABCAdapter attribute)
TypeBase (in module tvb.basic.traits.core)
TypeNode (class in tvb.basic.traits.itree_model)
TypeRegister (class in tvb.basic.traits.util)

U

ui_name (tvb.core.entities.transient.burst_configuration_entities.AdapterConfiguration attribute)
(tvb.core.portlets.portlet_configurer.PortletConfigurer attribute)
UIFilter (class in tvb.basic.filters.chain)
UNIQUE_ID_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute)
UniqueUsername (class in tvb.interfaces.web.controllers.users_controller)
unpack_zip() (tvb.core.entities.file.files_helper.FilesHelper method)
unravel_history() (in module tvb.simulator.common)
update() (in module tvb.core.code_versions.code_update_scripts.4455_update_code)
(in module tvb.core.code_versions.code_update_scripts.4750_update_code)
(in module tvb.core.code_versions.code_update_scripts.5454_update_code)
(in module tvb.core.code_versions.code_update_scripts.6093_update_code)
(in module tvb.core.code_versions.code_update_scripts.6600_update_code)
(in module tvb.core.code_versions.code_update_scripts.6728_update_code)
(in module tvb.core.code_versions.code_update_scripts.7350_update_code)
(in module tvb.core.code_versions.code_update_scripts.7450_update_code)
(in module tvb.core.entities.file.file_update_scripts.002_update_files)
(in module tvb.core.entities.file.file_update_scripts.003_update_files)
(in module tvb.core.entities.file.file_update_scripts.004_update_files)
(in module tvb.core.project_versions.project_update_scripts.1_update_project)
(in module tvb.core.project_versions.project_update_scripts.2_update_project)
(tvb.simulator.history.BaseHistory method)
(tvb.simulator.history.DenseHistory method)
update_axis() (tvb.adapters.visualizers.phase_plane_interactive.PhaseLineD3 method)
(tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method)
update_default_values() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method)
update_derived_parameters() (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo method)
(tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose method)
update_dictionary() (in module tvb.core.removers_factory)
update_dt() (in module tvb.interfaces.command.demos.datatypes.modify_h5_metadata)
update_eq_kwargs() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
update_executed_workflow_state() (tvb.core.services.workflow_service.WorkflowService method)
update_from_interface() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method)
(tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method)
update_history_status() (tvb.core.services.burst_service.BurstService method)
update_integrator_clamping() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method)
update_localconnectivity_metadata() (in module tvb.interfaces.command.demos.datatypes.modify_h5_metadata)
update_metadata() (tvb.core.services.project_service.ProjectService method)
update_operation_metadata() (tvb.core.entities.file.files_helper.FilesHelper method)
update_operations_count() (tvb.interfaces.web.controllers.base_controller.BaseController method)
update_portlet_configuration() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method)
(tvb.core.services.burst_service.BurstService method)
update_scaling() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method)
UPDATE_SCRIPTS_SUFFIX (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute)
UpdateManager (class in tvb.core.code_versions.base_classes)
updatemetadata() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
upgrade() (in module tvb.core.entities.model.db_update_scripts.001_update_db)
(in module tvb.core.entities.model.db_update_scripts.002_update_db)
(in module tvb.core.entities.model.db_update_scripts.003_update_db)
(in module tvb.core.entities.model.db_update_scripts.004_update_db)
(in module tvb.core.entities.model.db_update_scripts.005_update_db)
(in module tvb.core.entities.model.db_update_scripts.006_update_db)
(in module tvb.core.entities.model.db_update_scripts.007_update_db)
(in module tvb.core.entities.model.db_update_scripts.008_update_db)
(in module tvb.core.entities.model.db_update_scripts.009_update_db)
(in module tvb.core.entities.model.db_update_scripts.010_update_db)
(in module tvb.core.entities.model.db_update_scripts.011_update_db)
(in module tvb.core.entities.model.db_update_scripts.012_update_db)
(in module tvb.core.entities.model.db_update_scripts.013_update_db)
(in module tvb.core.entities.model.db_update_scripts.014_update_db)
(in module tvb.core.entities.model.db_update_scripts.015_update_db)
(in module tvb.core.entities.model.db_update_scripts.016_update_db)
(in module tvb.core.entities.model.db_update_scripts.017_update_db)
upgrade_file() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method)
url2path() (in module tvb.core.utils)
use_storage (tvb.basic.traits.core.TraitsInfo attribute)
User (in module tvb.core.entities.model.model_project)
user_environment_execution() (in module tvb.core.decorators)
USER_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute)
USER_ROLES (tvb.core.services.user_service.UserService attribute)
User_to_Project (in module tvb.core.entities.model.model_project)
UserController (class in tvb.interfaces.web.controllers.users_controller)
usermanagement() (tvb.interfaces.web.controllers.users_controller.UserController method)
UsernameException
UserPreferences (in module tvb.core.entities.model.model_project)
UserService (class in tvb.core.services.user_service)
using_template() (in module tvb.interfaces.web.controllers.decorators)

V

validate() (tvb.interfaces.web.controllers.users_controller.UserController method)
validate_matlab_path() (tvb.interfaces.web.controllers.settings_controller.SettingsController method)
validate_results() (tvb.core.model_validations.ModelValidator method)
validate_user() (tvb.core.services.user_service.UserService method)
ValidationException
ValidationRange (in module tvb.basic.traits.types_basic)
ValidationResult (class in tvb.datatypes.surfaces)
value (tvb.simulator.descriptors.Final.State attribute)
ValueWrapper (in module tvb.datatypes.mapped_values)
VarianceNodeVariance (in module tvb.analyzers.metric_variance_of_node_variance)
VersionSettings (class in tvb.basic.config.settings)
VERTICES_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute)
VHDR (class in tvb.adapters.uploaders.signals_importer)
view_stimulus() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)
viewall() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
viewoperations() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method)
VISUALIZERS_ONLINE_HELP_SHORTCUTS (tvb.interfaces.web.structure.WebStructure attribute)
VISUALIZERS_ROOT (tvb.basic.config.settings.WebSettings attribute)
(tvb.core.adapters.abcdisplayer.ABCDisplayer attribute)
VISUALIZERS_URL_PREFIX (tvb.basic.config.settings.WebSettings attribute)
(tvb.core.adapters.abcdisplayer.ABCDisplayer attribute)
VODE (in module tvb.simulator.integrators)
VODEStochastic (in module tvb.simulator.integrators)
Volume (in module tvb.datatypes.volumes)
VolumeRemover (class in tvb.datatype_removers.remover_volume)
VolumetricDataMixin (class in tvb.datatypes.structural)

W

WaveletCoefficients (in module tvb.datatypes.spectral)
WaveletSpectrogramVisualizer (class in tvb.adapters.visualizers.wavelet_spectrogram)
WEB_LOG_FILE (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute)
WEB_PROFILE (tvb.basic.profile.TvbProfile attribute)
WEB_SECTION_TITLES (tvb.interfaces.web.structure.WebStructure attribute)
WEB_SUBSECTION_TITLES (tvb.interfaces.web.structure.WebStructure attribute)
WebAdminSettings (class in tvb.basic.config.settings)
WebSettings (class in tvb.basic.config.settings)
WebSettingsProfile (class in tvb.config.profile_settings)
WebStructure (class in tvb.interfaces.web.structure)
WEIGHT_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute)
weights (tvb.simulator.history.BaseHistory attribute)
WEIGHTS_FILE (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute)
WEIGHTS_OPTIONS (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder attribute)
white() (tvb.simulator.noise.Noise method)
WhiteMatterSurface (in module tvb.datatypes.surfaces)
WilsonCowan (in module tvb.simulator.models.wilson_cowan)
Workflow (in module tvb.core.entities.model.model_workflow)
WorkflowDAO (class in tvb.core.entities.storage.workflow_dao)
WorkflowException
WorkflowInformation (class in tvb.core.entities.transient.burst_export_entities)
WorkflowInterStepsException
WorkflowService (class in tvb.core.services.workflow_service)
WorkflowStep (in module tvb.core.entities.model.model_workflow)
WorkflowStepConfiguration (class in tvb.core.entities.transient.burst_configuration_entities)
WorkflowStepInformation (class in tvb.core.entities.transient.burst_export_entities)
WorkflowStepView (in module tvb.core.entities.model.model_workflow)
WorkflowViewStepInformation (class in tvb.core.entities.transient.burst_export_entities)
Workspace (class in tvb.simulator.descriptors)
write() (tvb.adapters.uploaders.obj.parser.ObjWriter method)
(tvb.core.entities.file.xml_metadata_handlers.XMLWriter method)
write_config_data() (tvb.basic.config.stored.SettingsManager method)
write_data_slice() (tvb.datatypes.structural.VolumetricDataMixin method)
write_folder() (tvb.core.entities.file.files_helper.TvbZip method)
write_image_metadata() (tvb.core.entities.file.files_helper.FilesHelper method)
write_model_parameters() (tvb.core.services.burst_config_serialization.SerializationManager method)
write_noise_parameters() (tvb.core.services.burst_config_serialization.SerializationManager method)
write_operation_metadata() (tvb.core.entities.file.files_helper.FilesHelper method)
write_project_metadata() (tvb.core.entities.file.files_helper.FilesHelper method)
write_project_metadata_from_dict() (tvb.core.entities.file.files_helper.FilesHelper method)

X

XMLParser (class in tvb.adapters.uploaders.brco.parser)
XmlParserException
XMLPortletReader (class in tvb.core.portlets.xml_reader)
XMLReader (class in tvb.core.entities.file.xml_metadata_handlers)
XMLWriter (class in tvb.core.entities.file.xml_metadata_handlers)

Z

ZetterbergJansen (in module tvb.simulator.models.jansen_rit)
zip_directory() (in module tvb.simulator.common)
ZIP_FILE_EXTENSION (tvb.adapters.exporters.export_manager.ExportManager attribute)
zip_files() (tvb.core.entities.file.files_helper.FilesHelper static method)
zip_folder() (tvb.core.entities.file.files_helper.FilesHelper static method)
zip_folders() (tvb.core.entities.file.files_helper.FilesHelper static method)
ZIPConnectivityImporter (class in tvb.adapters.uploaders.zip_connectivity_importer)
ZipReader (class in tvb.basic.readers)
ZIPSurfaceImporter (class in tvb.adapters.uploaders.zip_surface_importer)
ZipSurfaceParser (class in tvb.adapters.uploaders.zip_surface.parser)
ZipTxtTractsImporter (class in tvb.adapters.uploaders.tract_importer)