TheVirtualBrain:

TheDocumentationwebsite.

Source code for tvb.contrib.tests.cosimulation.parallel.proxy_precision_delay_test

# -*- coding: utf-8 -*-
#
#
#  TheVirtualBrain-Contributors Package. This package holds simulator extensions.
#  See also http://www.thevirtualbrain.org
#
# (c) 2012-2022, Baycrest Centre for Geriatric Care ("Baycrest") and others
#
# This program is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software Foundation,
# either version 3 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.  See the GNU General Public License for more details.
# You should have received a copy of the GNU General Public License along with this
# program.  If not, see <http://www.gnu.org/licenses/>.
#
#
#   CITATION:
# When using The Virtual Brain for scientific publications, please cite it as follows:
#
#   Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide,
#   Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013)
#       The Virtual Brain: a simulator of primate brain network dynamics.
#   Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010)

"""
.. moduleauthor:: Lionel Kusch <lkusch@thevirtualbrain.org>
.. moduleauthor:: Dionysios Perdikis <dionperd@gmail.com>
"""

import numpy as np

from tvb.tests.library.base_testcase import BaseTestCase
from tvb.contrib.tests.cosimulation.parallel.function_tvb import TvbSim


[docs]class TestPrecisionDelay(BaseTestCase): """ compare the result between simulation with one proxy and without proxy and different delay """
[docs] def test_precision_delay(self): weight = np.array([[2, 8, 0], [0, 0, 0], [3, 0, 1]]) delay = np.array([[0.6, 0.5, 1.0], [0.7, 0.8, 3.0], [1.0, 0.5, 0.7]]) max = np.int(np.max(delay)*10+1) init_value = np.array([[[0.1,0.0], [0.1,0.0], [0.2,0.0]]] * max) initial_condition = init_value.reshape((max, 2, weight.shape[0], 1)) resolution_simulation = 0.1 synchronization_time = 0.1 * 4 proxy_id = [0] no_proxy = [1,2] # simulation with one proxy np.random.seed(42) sim = TvbSim(weight, delay, proxy_id, resolution_simulation, synchronization_time, initial_condition=initial_condition) time, result = sim(synchronization_time) # full simulation np.random.seed(42) sim_ref = TvbSim(weight, delay, [], resolution_simulation, synchronization_time, initial_condition=initial_condition) time, result_ref = sim_ref(synchronization_time) # compare with TVB Raw monitor delayed by synchronization_time np.testing.assert_array_equal(np.squeeze(result_ref[:, no_proxy, :], axis=2)[0], np.squeeze(result[0][:, no_proxy, :], axis=2)[0]) for i in range(0, 1000): time, result = sim(synchronization_time, [time, result_ref[:, proxy_id][:, :, 0]]) # compare with Raw monitor delayed by synchronization_time np.testing.assert_array_equal(result_ref, result[1]) time, result_ref = sim_ref(synchronization_time) # compare with TVB Raw monitor delayed by synchronization_time np.testing.assert_array_equal(result_ref[:, no_proxy, :], result[0][:, no_proxy, :])